Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006187

Physical Location & Seq

Genomic Coordinates Forward (+)

62754206 .. 62757440

Gene Structure 3235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG457400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCAGGCATCAAGAGCTAGGCTTTTCAAGGAATACAAAGAGGTTCAACGAGAGAAAGTTGCAGATCCAGATATTCAATTAGTTTGTGATGACTCCAACATATTTAAATGGACGGCTCTCATCAAGGGACCATCGGAGACTCCATTTGAGGGTGGCATATTCCAGCTTGCTTTTGCAGTTCCTGAGCAGTATCCACTGCAACCCCCACAAGTCAGGTTCTTGACAAAAATTTTCCATCCAAACGTGCATTTTAAGACAGGAGAGATATGCCTTGACATCTTGAAGAATGCATGGAGCCCTGCTTGGACACTTCAGTCTGTTTGTAGGGCTATAATTGCTTTAATGGCCCATCCAGAACCCGATAGCCCACTGAACTGTGATTCAGGTAAGTTAGTTATACATTTGAATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006464 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0019899 GO:0030258 GO:0031625 GO:0032446 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042886 GO:0043170 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044389 GO:0044424 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0061630 GO:0061659 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0140096 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UQ_con

Protein Analysis

137

Amino Acids

15.53

Weight (kDa)

6.4

Isoelectric Point (pI)

43.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	7 - 131	1.7e-42	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25760 AT5G25760
fragaria_vesca	FvH4_2g35960
malus_domestica	MD08G1116800.v1.1 MD15G1096300.v1.1
prunus_persica	Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1
pyrus_communis	pycom08g09730 pycom15g08840
rosa_chinensis	RchiOBHm_Chr6g0305911
rosa_laevigata	RLG00000010847
rosa_multiflora	Rmu_sc0001809.1_g000048
rosa_rugosa	Rorug06G0345100 Rorug06G0345200 Rorug06G0345300.1
rosa_samantha	Rh6AG456800 Rh6BG444500 Rh6CG470700 Rh6DG457400
rosa_wichuraiana	Rw6G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	412
AasI	GACNNNNNNGTC	1 cut(s)	313
AclWI	GGATC	1 cut(s)	59
AcsI	RAATTY	2 cut(s)	228, 406
AcuI	CTGAAG	1 cut(s)	296
AfiI	CCNNNNNNNGG	1 cut(s)	149
AgsI	TTSAA	5 cut(s)	28, 47, 77, 283, 406
AluBI	AGCT	2 cut(s)	17, 166
AluI	AGCT	2 cut(s)	17, 166
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	1 cut(s)	59
AlwNI	CAGNNNCTG	1 cut(s)	182
AoxI	GGCC	1 cut(s)	345
ApoI	RAATTY	2 cut(s)	228, 406
AspS9I	GGNCC	2 cut(s)	128, 346
AvaII	GGWCC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	299
BccI	CCATC	3 cut(s)	139, 243, 357
BceAI	ACGGC	1 cut(s)	129
BciVI	GTATCC	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	18
BfuI	GTATCC	1 cut(s)	201
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	2 cut(s)	128, 346
BmiI	GGNNCC	2 cut(s)	129, 296
BmsI	GCATC	1 cut(s)	17
Bpu10I	CCTNAGC	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
BseGI	GGATG	2 cut(s)	235, 349
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMII	CTCAG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	347
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp143I	GATC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	129, 296
BspPI	GGATC	1 cut(s)	59
BssMI	GATC	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	6, 168
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	235, 349
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 335, 344
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	347
BtsCI	GGATG	2 cut(s)	235, 349
BtsI	GCAGTG	1 cut(s)	194
BtsIMutI	CAGTG	2 cut(s)	194, 368
Cac8I	GCNNGC	2 cut(s)	6, 168
CaiI	CAGNNNCTG	1 cut(s)	182
Cfr13I	GGNCC	2 cut(s)	128, 346
CviAII	CATG	1 cut(s)	291
CviJI	RGCY	8 cut(s)	17, 22, 116, 166, 297, 329, 347, 366
CviKI_1	RGCY	8 cut(s)	17, 22, 116, 166, 297, 329, 347, 366
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
DraI	TTTAAA	1 cut(s)	106
DrdI	GACNNNNNNGTC	1 cut(s)	313
DseDI	GACNNNNNNGTC	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	296
EcoT22I	ATGCAT	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	299
FaeI	CATG	1 cut(s)	294
FaiI	YATR	7 cut(s)	101, 158, 268, 292, 332, 398, 412
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	1 cut(s)	290
FokI	GGATG	2 cut(s)	222, 336
FriOI	GRGCYC	1 cut(s)	299
FspBI	CTAG	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	347
Hin1II	CATG	1 cut(s)	294
HinfI	GANTC	3 cut(s)	92, 139, 380
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	6 cut(s)	12, 68, 182, 220, 280, 353
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	6 cut(s)	4, 62, 176, 199, 247, 290
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 335, 344
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	1 cut(s)	294
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	294
LpnPI	CCDG	8 cut(s)	81, 176, 195, 199, 243, 312, 366, 369
LweI	GCATC	1 cut(s)	17
MaeI	CTAG	1 cut(s)	18
MaeII	ACGT	1 cut(s)	243
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	1 cut(s)	295
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	4 cut(s)	77, 228, 333, 406
MlyI	GAGTC	2 cut(s)	86, 133
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	2 cut(s)	34, 142
Mph1103I	ATGCAT	1 cut(s)	292
MseI	TTAA	3 cut(s)	105, 252, 341
Mva1269I	GAATGC	1 cut(s)	292
MwoI	GCNNNNNNNGC	3 cut(s)	14, 335, 344
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	1 cut(s)	294
NlaIV	GGNNCC	2 cut(s)	129, 296
NsiI	ATGCAT	1 cut(s)	292
PctI	GAATGC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	380
PleI	GAGTC	2 cut(s)	86, 133
PpsI	GAGTC	2 cut(s)	86, 133
PsiI	TTATAA	1 cut(s)	412
PspN4I	GGNNCC	2 cut(s)	129, 296
PspPI	GGNCC	2 cut(s)	128, 346
PstNI	CAGNNNCTG	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	64
SaqAI	TTAA	3 cut(s)	105, 252, 341
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	2 cut(s)	128, 346
SchI	GAGTC	2 cut(s)	86, 133
SduI	GDGCHC	1 cut(s)	299
SetI	ASST	6 cut(s)	19, 45, 168, 218, 246, 388
SfaNI	GCATC	1 cut(s)	17
SinI	GGWCC	1 cut(s)	128
SmiI	ATTTAAAT	1 cut(s)	106
Sse9I	AATT	4 cut(s)	77, 228, 333, 406
SspMI	CTAG	1 cut(s)	18
SwaI	ATTTAAAT	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	377
TaiI	ACGT	1 cut(s)	246
TasI	AATT	4 cut(s)	77, 228, 333, 406
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	3 cut(s)	105, 252, 341
Tru9I	TTAA	3 cut(s)	105, 252, 341
TscAI	CASTG	2 cut(s)	201, 375
TspRI	CASTG	2 cut(s)	201, 375
VpaK11BI	GGWCC	1 cut(s)	128
XapI	RAATTY	2 cut(s)	228, 406
XspI	CTAG	1 cut(s)	18
Zsp2I	ATGCAT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.