Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006187

Physical Location & Seq

Genomic Coordinates Forward (+)

49605369 .. 49607701

Gene Structure 2333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0345200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGCACTCAACTACATTTTCCGCAAGACCCTCCCCTCCGCATTTTCCCGTTTGTTTTGTAGATCTCGGTTCCCGGTCGAAGCACTTCAAAATCAGTGGTTCTGTACAACAAGACTCACCGGCTCCGATGATTTTACAGTCTCCTACCTGGTTAACTCATGTGGGCTTTCCCCAGAAGCCGCCATTAAAGCATCCCACAAGGTAAAGCTTCAATCTTTAGTAAAACCAGACTCTGTGTTAGCCCTTTTGAGGGAGTATGAATTTTCAGACTCCCAGATCTCAACTGTTGTTCGTAGATACCCACGACTTGTCTTAGCCGATGGGAAGAAAACCCTTTTGCCAAAGCTTGAGTTTTTGTGCTCCGTAGGAATGTCAAGGCTCGACCTTGCAAAAACACTGAGCTACAACCCAATTCTTTTTACGCGAAGCTTGAAAAACTGCATTACACCATGTTATACCTTCCTCAGAAGCGTGGTGCTCTCTGATTTCAAGGTCGTCAATATTTGGAAGCGCCACTCATGGATTTTCGGGGCAATTCTATCCAAGAATGTGATACCCAATATTGGGCTTCTCAGAGAATTGGGCGTGCCCCAGTCGTCTATCACTATGTTGGTAACGTATCATGCTGAGATTGTGATGAGAAAGCCTGAATCGTTCAGTGAACTTGTGGGTGAAGTCGAACAATTGGGATTTGACCCTCAAAAGTCGAGCTTTGTGCATGCCATGCACGCATTACATGGGAAGAAGACAACATGGAGGCGAAATGAAGAGGCATATAGGAGGTGGGGTTGGTCGGATAATGATATTCTTTCTGCCTTTAGGTTGTGTCCACTGTGTATGATCAAGTCGGAGAAGAAAATAATGGAAACAATGGATTTCTTAGTGAACAAGATGGGATGGAAATTAGAAAAACTTGCAAAGTTTCCATATGTTTTTTTGTACAGCTTGGAGAAGAGAATCATCCCAAGGTGTTCAGTTGTTAGAGTTTTGTTGTTGAAAGGATTGATGAAAGGGGACAAGTTGAGTTTGGGTACTATTATTACTCCTTCAGAGAAGTACTTCTTGAATATGTTTGTGACCAGATATCTCGACAAAGTACCCCAATTGTCGAATGTGTACCAAGGAAAAGCGAATATATGCATCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006464 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0019899 GO:0030258 GO:0031625 GO:0032446 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042886 GO:0043170 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044389 GO:0044424 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0061630 GO:0061659 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0140096 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UQ_con

Protein Analysis

382

Amino Acids

43.89

Weight (kDa)

9.69

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	80 - 234	1.3e-22	mTERF
mTERF	PF02536	253 - 354	6.7e-17	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25760 AT5G25760
fragaria_vesca	FvH4_2g35960
malus_domestica	MD08G1116800.v1.1 MD15G1096300.v1.1
prunus_persica	Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1
pyrus_communis	pycom08g09730 pycom15g08840
rosa_chinensis	RchiOBHm_Chr6g0305911
rosa_laevigata	RLG00000010847
rosa_multiflora	Rmu_sc0001809.1_g000048
rosa_rugosa	Rorug06G0345100 Rorug06G0345200 Rorug06G0345300.1
rosa_samantha	Rh6AG456800 Rh6BG444500 Rh6CG470700 Rh6DG457400
rosa_wichuraiana	Rw6G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	424
AciI	CCGC	3 cut(s)	22, 39, 180
AcsI	RAATTY	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	1032
AfaI	GTAC	6 cut(s)	106, 941, 1033, 1058, 1098, 1118
AfiI	CCNNNNNNNGG	4 cut(s)	249, 250, 563, 564
AgsI	TTSAA	6 cut(s)	89, 212, 433, 490, 997, 1066
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	6 cut(s)	208, 346, 402, 429, 711, 945
AluI	AGCT	6 cut(s)	208, 346, 402, 429, 711, 945
Alw21I	GWGCWC	2 cut(s)	362, 480
Alw26I	GTCTC	1 cut(s)	145
AlwNI	CAGNNNCTG	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	260
Asp700I	GAANNNNTTC	2 cut(s)	84, 1058
AspLEI	GCGC	1 cut(s)	513
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	2 cut(s)	109, 683
BaeGI	GKGCMC	1 cut(s)	591
BbsI	GAAGAC	1 cut(s)	752
Bbv12I	GWGCWC	2 cut(s)	362, 480
BccI	CCATC	3 cut(s)	314, 886, 891
BcgI	CGANNNNNNTGC	2 cut(s)	697, 731
BciT130I	CCWGG	1 cut(s)	149
BclI	TGATCA	1 cut(s)	840
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	145
BfmI	CTRYAG	1 cut(s)	1145
BfoI	RGCGCY	1 cut(s)	514
BglII	AGATCT	2 cut(s)	62, 276
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
BmcAI	AGTACT	1 cut(s)	1058
Bme1390I	CCNGG	2 cut(s)	74, 149
BmiI	GGNNCC	2 cut(s)	71, 124
BmrFI	CCNGG	2 cut(s)	74, 149
BmrI	ACTGGG	1 cut(s)	586
BmsI	GCATC	1 cut(s)	200
BmuI	ACTGGG	1 cut(s)	586
BpiI	GAAGAC	1 cut(s)	752
BpuEI	CTTGAG	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	965, 1120
BsaXI	ACNNNNNCTCC	2 cut(s)	772, 802
Bsc4I	CCNNNNNNNGG	4 cut(s)	249, 250, 563, 564
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	1 cut(s)	592
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	2 cut(s)	965, 1120
BseGI	GGATG	4 cut(s)	191, 902, 960, 1140
BseLI	CCNNNNNNNGG	4 cut(s)	249, 250, 563, 564
BseMII	CTCAG	4 cut(s)	389, 478, 586, 618
BseNI	ACTGG	1 cut(s)	592
BseSI	GKGCMC	1 cut(s)	591
Bsh1236I	CGCG	1 cut(s)	424
Bsh1285I	CGRYCG	1 cut(s)	78
BsiEI	CGRYCG	1 cut(s)	78
BsiHKAI	GWGCWC	2 cut(s)	362, 480
BsiSI	CCGG	2 cut(s)	74, 120
BslFI	GGGAC	1 cut(s)	1028
BslI	CCNNNNNNNGG	4 cut(s)	249, 250, 563, 564
BsmAI	GTCTC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	1028
Bsp1286I	GDGCHC	3 cut(s)	362, 480, 591
Bsp1407I	TGTACA	2 cut(s)	104, 939
Bsp143I	GATC	3 cut(s)	62, 276, 840
BspACI	CCGC	3 cut(s)	22, 39, 180
BspCNI	CTCAG	4 cut(s)	390, 477, 585, 619
BspFNI	CGCG	1 cut(s)	424
BspLI	GGNNCC	2 cut(s)	71, 124
BsrFI	RCCGGY	1 cut(s)	119
BsrGI	TGTACA	2 cut(s)	104, 939
BsrI	ACTGG	1 cut(s)	592
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	2 cut(s)	965, 1120
BssMI	GATC	3 cut(s)	62, 276, 840
BssT1I	CCWWGG	2 cut(s)	965, 1120
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	3 cut(s)	139, 286, 834
Bst6I	CTCTTC	2 cut(s)	762, 947
BstAPI	GCANNNNNTGC	1 cut(s)	724
BstAUI	TGTACA	2 cut(s)	104, 939
BstC8I	GCNNGC	3 cut(s)	587, 720, 729
BstDEI	CTNAG	6 cut(s)	313, 398, 464, 572, 627, 880
BstF5I	GGATG	4 cut(s)	191, 902, 960, 1140
BstFNI	CGCG	1 cut(s)	424
BstH2I	RGCGCY	1 cut(s)	514
BstHHI	GCGC	1 cut(s)	513
BstKTI	GATC	3 cut(s)	65, 279, 843
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	3 cut(s)	62, 276, 840
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 724, 728
BstNI	CCWGG	1 cut(s)	149
BstNSI	RCATGY	1 cut(s)	722
BstSCI	CCNGG	2 cut(s)	72, 147
BstSFI	CTRYAG	1 cut(s)	1145
BstSLI	GKGCMC	1 cut(s)	591
BstUI	CGCG	1 cut(s)	424
BstV2I	GAAGAC	1 cut(s)	752
BstX2I	RGATCY	2 cut(s)	62, 276
BstYI	RGATCY	2 cut(s)	62, 276
BtsCI	GGATG	4 cut(s)	191, 902, 960, 1140
BtsIMutI	CAGTG	4 cut(s)	101, 395, 664, 830
Cac8I	GCNNGC	3 cut(s)	587, 720, 729
CaiI	CAGNNNCTG	1 cut(s)	233
CfoI	GCGC	1 cut(s)	513
Cfr10I	RCCGGY	1 cut(s)	119
CsiI	ACCWGGT	1 cut(s)	147
Csp6I	GTAC	6 cut(s)	105, 940, 1032, 1057, 1097, 1117
CspCI	CAANNNNNGTGG	2 cut(s)	77, 112
CviAII	CATG	8 cut(s)	159, 450, 519, 623, 719, 724, 737, 753
CviQI	GTAC	6 cut(s)	105, 940, 1032, 1057, 1097, 1117
DdeI	CTNAG	6 cut(s)	313, 398, 464, 572, 627, 880
DpnI	GATC	3 cut(s)	64, 278, 842
DpnII	GATC	3 cut(s)	62, 276, 840
Eam1104I	CTCTTC	2 cut(s)	762, 947
EarI	CTCTTC	2 cut(s)	762, 947
Eco130I	CCWWGG	2 cut(s)	965, 1120
Eco32I	GATATC	1 cut(s)	1085
Eco57I	CTGAAG	1 cut(s)	1032
EcoRII	CCWGG	1 cut(s)	147
EcoRV	GATATC	1 cut(s)	1085
EcoT14I	CCWWGG	2 cut(s)	965, 1120
EcoT22I	ATGCAT	1 cut(s)	1142
ErhI	CCWWGG	2 cut(s)	965, 1120
FaeI	CATG	8 cut(s)	162, 453, 522, 626, 722, 727, 740, 756
FalI	AAGNNNNNCTT	4 cut(s)	695, 727, 1046, 1078
FaqI	GGGAC	1 cut(s)	1028
FatI	CATG	8 cut(s)	158, 449, 518, 622, 718, 723, 736, 752
FauNDI	CATATG	1 cut(s)	928
FbaI	TGATCA	1 cut(s)	840
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	4 cut(s)	178, 909, 947, 1127
Fsp4HI	GCNGC	1 cut(s)	180
GlaI	GCGC	1 cut(s)	512
GluI	GCNGC	1 cut(s)	180
HaeII	RGCGCY	1 cut(s)	514
HapII	CCGG	2 cut(s)	74, 120
HhaI	GCGC	1 cut(s)	513
Hin1II	CATG	8 cut(s)	162, 453, 522, 626, 722, 727, 740, 756
Hin6I	GCGC	1 cut(s)	511
HinP1I	GCGC	1 cut(s)	511
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	3 cut(s)	206, 344, 427
HinfI	GANTC	5 cut(s)	114, 230, 269, 650, 957
HpaI	GTTAAC	1 cut(s)	154
HpaII	CCGG	2 cut(s)	74, 120
HphI	GGTGA	2 cut(s)	109, 683
Hpy166II	GTNNAC	5 cut(s)	154, 662, 830, 886, 1117
Hpy188I	TCNGA	8 cut(s)	127, 268, 467, 484, 575, 796, 850, 1051
Hpy188III	TCNNGA	2 cut(s)	1063, 1088
Hpy8I	GTNNAC	5 cut(s)	154, 662, 830, 886, 1117
HpyAV	CCTTC	2 cut(s)	469, 1056
HpyCH4III	ACNGT	3 cut(s)	139, 286, 834
HpyCH4IV	ACGT	1 cut(s)	617
HpyCH4V	TGCA	6 cut(s)	389, 441, 718, 727, 917, 1140
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 724, 728
HpyF3I	CTNAG	6 cut(s)	313, 398, 464, 572, 627, 880
HpySE526I	ACGT	1 cut(s)	617
Hsp92II	CATG	8 cut(s)	162, 453, 522, 626, 722, 727, 740, 756
HspAI	GCGC	1 cut(s)	511
Ksp22I	TGATCA	1 cut(s)	840
KspAI	GTTAAC	1 cut(s)	154
Kzo9I	GATC	3 cut(s)	62, 276, 840
LmnI	GCTCC	2 cut(s)	128, 365
LweI	GCATC	1 cut(s)	200
MabI	ACCWGGT	1 cut(s)	147
MaeII	ACGT	1 cut(s)	617
MaeIII	GTNAC	2 cut(s)	613, 1075
MalI	GATC	3 cut(s)	64, 278, 842
MboI	GATC	3 cut(s)	62, 276, 840
MboII	GAAGA	6 cut(s)	337, 754, 757, 779, 865, 964
MfeI	CAATTG	2 cut(s)	683, 1103
MflI	RGATCY	2 cut(s)	62, 276
MhlI	GDGCHC	3 cut(s)	362, 480, 591
MluCI	AATT	7 cut(s)	260, 411, 534, 578, 683, 902, 1103
MlyI	GAGTC	3 cut(s)	108, 224, 263
MmeI	TCCRAC	2 cut(s)	774, 828
MnlI	CCTC	8 cut(s)	41, 46, 243, 473, 708, 750, 763, 774
Mph1103I	ATGCAT	1 cut(s)	1142
MroXI	GAANNNNTTC	2 cut(s)	84, 1058
MseI	TTAA	2 cut(s)	153, 186
MspI	CCGG	2 cut(s)	74, 120
MspR9I	CCNGG	2 cut(s)	74, 149
MunI	CAATTG	2 cut(s)	683, 1103
MvaI	CCWGG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	424
MwoI	GCNNNNNNNGC	3 cut(s)	188, 724, 728
NciI	CCSGG	1 cut(s)	74
NdeI	CATATG	1 cut(s)	928
NdeII	GATC	3 cut(s)	62, 276, 840
NlaIII	CATG	8 cut(s)	162, 453, 522, 626, 722, 727, 740, 756
NlaIV	GGNNCC	2 cut(s)	71, 124
NmuCI	GTSAC	1 cut(s)	1075
NsiI	ATGCAT	1 cut(s)	1142
NspI	RCATGY	1 cut(s)	722
PaeI	GCATGC	1 cut(s)	722
PdmI	GAANNNNTTC	2 cut(s)	84, 1058
PfeI	GAWTC	2 cut(s)	650, 957
PkrI	GCNGC	1 cut(s)	181
PleI	GAGTC	3 cut(s)	108, 224, 263
PpsI	GAGTC	3 cut(s)	108, 224, 263
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	2 cut(s)	71, 124
PstNI	CAGNNNCTG	1 cut(s)	233
PsuI	RGATCY	2 cut(s)	62, 276
RsaI	GTAC	6 cut(s)	106, 941, 1033, 1058, 1098, 1118
RsaNI	GTAC	6 cut(s)	105, 940, 1032, 1057, 1097, 1117
SaqAI	TTAA	2 cut(s)	153, 186
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	3 cut(s)	62, 276, 840
ScaI	AGTACT	1 cut(s)	1058
SchI	GAGTC	3 cut(s)	108, 224, 263
ScrFI	CCNGG	2 cut(s)	74, 149
SduI	GDGCHC	3 cut(s)	362, 480, 591
SexAI	ACCWGGT	1 cut(s)	147
SfaNI	GCATC	1 cut(s)	200
SfcI	CTRYAG	1 cut(s)	1145
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
SphI	GCATGC	1 cut(s)	722
Sse9I	AATT	7 cut(s)	260, 411, 534, 578, 683, 902, 1103
SsiI	CCGC	3 cut(s)	22, 39, 180
SspI	AATATT	2 cut(s)	502, 562
StyD4I	CCNGG	2 cut(s)	72, 147
StyI	CCWWGG	2 cut(s)	965, 1120
TaaI	ACNGT	3 cut(s)	139, 286, 834
TaiI	ACGT	1 cut(s)	620
TaqI	TCGA	6 cut(s)	78, 381, 678, 707, 1089, 1109
TasI	AATT	7 cut(s)	260, 411, 534, 578, 683, 902, 1103
TatI	WGTACW	3 cut(s)	104, 939, 1056
TauI	GCSGC	1 cut(s)	182
TfiI	GAWTC	2 cut(s)	650, 957
Tru1I	TTAA	2 cut(s)	153, 186
Tru9I	TTAA	2 cut(s)	153, 186
TscAI	CASTG	4 cut(s)	101, 402, 664, 837
TseFI	GTSAC	1 cut(s)	1075
Tsp45I	GTSAC	1 cut(s)	1075
TspDTI	ATGAA	3 cut(s)	273, 780, 1022
TspGWI	ACGGA	1 cut(s)	352
TspRI	CASTG	4 cut(s)	101, 402, 664, 837
XapI	RAATTY	1 cut(s)	260
XceI	RCATGY	1 cut(s)	722
XmnI	GAANNNNTTC	2 cut(s)	84, 1058
ZrmI	AGTACT	1 cut(s)	1058
Zsp2I	ATGCAT	1 cut(s)	1142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.