Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0006187

Physical Location & Seq

Genomic Coordinates Reverse (-)

8103377 .. 8105644

Gene Structure 2268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g09730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCAGGCATCAAGGGCACGGCTTTTCAAGGAATACAAAGAGGTGCAGCGAGAGAAAGTTGCTGATCCAGATATTCAATTAGTTTGTGATGACACAAACATATTTAAATGGACTGCTCTCATCAAGGGTCCATCAGAGACCCCATTTGAAGGCGGCATATTCCAGCTTGCTTTTGCGGTTCCTGAGCAGTATCCTTTGCAACCTCCACAAGTCAGGTTCTTGACAAAAATATTCCATCCAAATGTACATTTCAAGACGGGAGAGATTTGCCTTGATATTTTGAAGAATGCATGGAGCCCTGCTTGGACACTTCAATCTGTTTGTAGGGCTATAATCGCTTTAATGGCCCATCCAGAACCTGACAGCCCATTGAACTGTGATTCCGGCAATCTTCTGCGTTCTGGCGACCTCCGAGGGTACTATTCCATGGCACGAATGTACACTAGGCTTGCAGCCATGCCCAAGAAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006464 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0019899 GO:0030258 GO:0031625 GO:0032446 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042886 GO:0043170 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044389 GO:0044424 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0061630 GO:0061659 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0140096 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UQ_con

Protein Analysis

158

Amino Acids

17.81

Weight (kDa)

8.69

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	7 - 144	7e-43	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25760 AT5G25760
fragaria_vesca	FvH4_2g35960
malus_domestica	MD08G1116800.v1.1 MD15G1096300.v1.1
prunus_persica	Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1
pyrus_communis	pycom08g09730 pycom15g08840
rosa_chinensis	RchiOBHm_Chr6g0305911
rosa_laevigata	RLG00000010847
rosa_multiflora	Rmu_sc0001809.1_g000048
rosa_rugosa	Rorug06G0345100 Rorug06G0345200 Rorug06G0345300.1
rosa_samantha	Rh6AG456800 Rh6BG444500 Rh6CG470700 Rh6DG457400
rosa_wichuraiana	Rw6G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	153, 176
AclWI	GGATC	1 cut(s)	59
AfaI	GTAC	3 cut(s)	246, 419, 440
AfiI	CCNNNNNNNGG	2 cut(s)	149, 467
AgsI	TTSAA	7 cut(s)	28, 77, 149, 253, 283, 314, 373
AloI	GAACNNNNNNTCC	2 cut(s)	365, 397
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	1 cut(s)	59
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	345
ApeKI	GCWGC	2 cut(s)	46, 452
AspS9I	GGNCC	2 cut(s)	128, 346
AvaII	GGWCC	1 cut(s)	128
BaeGI	GKGCMC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	58, 464
BccI	CCATC	3 cut(s)	139, 243, 357
BceAI	ACGGC	1 cut(s)	35
BciVI	GTATCC	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	444
BfuI	GTATCC	1 cut(s)	201
BisI	GCNGC	3 cut(s)	47, 154, 453
BlsI	GCNGC	3 cut(s)	48, 155, 454
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	2 cut(s)	128, 346
BmiI	GGNNCC	3 cut(s)	129, 180, 296
BmsI	GCATC	1 cut(s)	17
Bpu10I	CCTNAGC	1 cut(s)	183
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	412, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 467
BseDI	CCNNGG	2 cut(s)	412, 426
BseGI	GGATG	2 cut(s)	235, 349
BseLI	CCNNNNNNNGG	2 cut(s)	149, 467
BseMII	CTCAG	1 cut(s)	174
BseSI	GKGCMC	1 cut(s)	19
BseXI	GCAGC	2 cut(s)	58, 464
BsgI	GTGCAG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	347
BsiSI	CCGG	1 cut(s)	384
BslI	CCNNNNNNNGG	2 cut(s)	149, 467
BsmAI	GTCTC	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	347
Bso31I	GGTCTC	1 cut(s)	131
Bsp1286I	GDGCHC	2 cut(s)	19, 299
Bsp1407I	TGTACA	2 cut(s)	244, 438
Bsp143I	GATC	1 cut(s)	64
Bsp19I	CCATGG	1 cut(s)	426
BspACI	CCGC	2 cut(s)	153, 176
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	3 cut(s)	129, 180, 296
BspPI	GGATC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	131
BsrGI	TGTACA	2 cut(s)	244, 438
BssECI	CCNNGG	2 cut(s)	412, 426
BssMI	GATC	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	426
Bst4CI	ACNGT	1 cut(s)	377
BstAUI	TGTACA	2 cut(s)	244, 438
BstC8I	GCNNGC	3 cut(s)	6, 168, 450
BstDEI	CTNAG	1 cut(s)	183
BstDSI	CCRYGG	1 cut(s)	426
BstF5I	GGATG	2 cut(s)	235, 349
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 335, 344
BstSLI	GKGCMC	1 cut(s)	19
BstV1I	GCAGC	2 cut(s)	58, 464
BsuI	GTATCC	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	347
BtgI	CCRYGG	1 cut(s)	426
BtsCI	GGATG	2 cut(s)	235, 349
Cac8I	GCNNGC	3 cut(s)	6, 168, 450
CaiI	CAGNNNCTG	1 cut(s)	359
Cfr13I	GGNCC	2 cut(s)	128, 346
Csp6I	GTAC	3 cut(s)	245, 418, 439
CviAII	CATG	3 cut(s)	291, 427, 457
CviJI	RGCY	9 cut(s)	22, 166, 297, 329, 347, 366, 448, 455, 471
CviKI_1	RGCY	9 cut(s)	22, 166, 297, 329, 347, 366, 448, 455, 471
CviQI	GTAC	3 cut(s)	245, 418, 439
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
DraI	TTTAAA	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	426
Eco24I	GRGCYC	1 cut(s)	299
Eco31I	GGTCTC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	426
EcoT22I	ATGCAT	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	3 cut(s)	294, 430, 460
FaiI	YATR	6 cut(s)	101, 158, 292, 332, 428, 458
FatI	CATG	3 cut(s)	290, 426, 456
Fnu4HI	GCNGC	3 cut(s)	47, 154, 453
FokI	GGATG	2 cut(s)	222, 336
FriOI	GRGCYC	1 cut(s)	299
Fsp4HI	GCNGC	3 cut(s)	47, 154, 453
FspBI	CTAG	1 cut(s)	444
GluI	GCNGC	3 cut(s)	47, 154, 453
HaeIII	GGCC	1 cut(s)	347
HapII	CCGG	1 cut(s)	384
Hin1II	CATG	3 cut(s)	294, 430, 460
HinfI	GANTC	1 cut(s)	380
HpaII	CCGG	1 cut(s)	384
Hpy166II	GTNNAC	1 cut(s)	441
Hpy188I	TCNGA	2 cut(s)	136, 413
Hpy188III	TCNNGA	5 cut(s)	68, 182, 220, 253, 353
Hpy8I	GTNNAC	1 cut(s)	441
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4V	TGCA	5 cut(s)	4, 46, 199, 290, 452
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 335, 344
HpyF3I	CTNAG	1 cut(s)	183
Hsp92II	CATG	3 cut(s)	294, 430, 460
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	294
LpnPI	CCDG	9 cut(s)	81, 176, 195, 199, 312, 366, 372, 387, 397
Lsp1109I	GCAGC	2 cut(s)	58, 464
LweI	GCATC	1 cut(s)	17
MaeI	CTAG	1 cut(s)	444
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	2 cut(s)	295, 383
MhlI	GDGCHC	2 cut(s)	19, 299
MluCI	AATT	1 cut(s)	77
MnlI	CCTC	4 cut(s)	34, 213, 407, 419
Mph1103I	ATGCAT	1 cut(s)	292
MseI	TTAA	2 cut(s)	105, 341
MslI	CAYNNNNRTG	1 cut(s)	240
MspI	CCGG	1 cut(s)	384
Mva1269I	GAATGC	1 cut(s)	292
MwoI	GCNNNNNNNGC	3 cut(s)	14, 335, 344
NcoI	CCATGG	1 cut(s)	426
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	3 cut(s)	294, 430, 460
NlaIV	GGNNCC	3 cut(s)	129, 180, 296
NsiI	ATGCAT	1 cut(s)	292
PctI	GAATGC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	380
PkrI	GCNGC	3 cut(s)	48, 155, 454
PspN4I	GGNNCC	3 cut(s)	129, 180, 296
PspPI	GGNCC	2 cut(s)	128, 346
PstNI	CAGNNNCTG	1 cut(s)	359
RsaI	GTAC	3 cut(s)	246, 419, 440
RsaNI	GTAC	3 cut(s)	245, 418, 439
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	2 cut(s)	105, 341
SatI	GCNGC	3 cut(s)	47, 154, 453
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	2 cut(s)	128, 346
SduI	GDGCHC	2 cut(s)	19, 299
SetI	ASST	6 cut(s)	45, 168, 205, 218, 361, 411
SfaNI	GCATC	1 cut(s)	17
SinI	GGWCC	1 cut(s)	128
SmiI	ATTTAAAT	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	240
Sse9I	AATT	1 cut(s)	77
SsiI	CCGC	2 cut(s)	153, 176
SspI	AATATT	1 cut(s)	231
SspMI	CTAG	1 cut(s)	444
StyI	CCWWGG	1 cut(s)	426
SwaI	ATTTAAAT	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	377
TasI	AATT	1 cut(s)	77
TatI	WGTACW	2 cut(s)	244, 438
TauI	GCSGC	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	2 cut(s)	105, 341
Tru9I	TTAA	2 cut(s)	105, 341
TseI	GCWGC	2 cut(s)	46, 452
VpaK11BI	GGWCC	1 cut(s)	128
XspI	CTAG	1 cut(s)	444
Zsp2I	ATGCAT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.