AT5G26110

RIO1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012898
Physical Location & Seq
Reverse (-)
9117907 .. 9119841
1935 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G26110.3

Sequence Viewer

Length: 681 bp
ATGGATTGTGAGGAAAACGTTAGGGATGAATCACTCGTTTTGATTAAACAAGGAGCAGAAGCTAGGGTGTTCGAGTCTACATTTGCTGGAAGAAGATCCATCGTGAAAGAACGTTTCTCGAAGAAATATAGACATCCGATTTTGGATGCAAAACTCACACTTAAACGCTTGAATGCGGAAGCTAGGTGTATGACAAAGGCAAGAAAGCTCGGGGTTTGTACTCCAGTCCTATATGCTGTGGATACTCTGCTTCACTCTTTAACACTTGAGTACATTGAGGGGGTCTCTGTTAAGGATATTTTCCTTGAGTTTGGGACCAATGGGGTTGTTGAGGAACGTTTAGATGATGTTGCTGCTCAGATTGGGGCTGCAATTGCTAAGCTCCATGATGGTGGCTTGGCTCATGGTGATTTGACCACATCAAATATGTTAGTCAGAAGTGGAACAAATCAGCTGGTACTAATTGATTTTGGCTTGAGCGTCACATCGACCTTGCCTGAAGACAAAGCTGTTGATTTATATGTACTTGAAAGAGCCTTACTCTCAATGCATTCGTCATGCGGGAATGTGATGGATCGTATACTGACGGCGTATAGGAAGTCCTCAAAGCAATGGTCAGCCACGTTTAACAAGCTCGCACAAGTGAGACAGCGAGGGAGAAAGCGGACTATGATTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

226

Amino Acids

25.13

Weight (kDa)

9.17

Isoelectric Point (pI)

33.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RIO1 PF01163 24 - 167 1.8e-07 RIO domain
Kdo PF06293 36 - 183 2.3e-08 Lipopolysaccharide kinase (Kdo/WaaP) family
Pkinase PF00069 50 - 163 3.1e-10 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 54 - 163 2.7e-07 Protein tyrosine and serine/threonine kinase
ABC1 PF03109 72 - 162 7.5e-08 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012898)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26110 AT5G26110 AT5G26110
fragaria_vesca FvH4_2g23150
malus_domestica MD11G1280900.v1.1
prunus_persica Prupe.8G236800_v2.0.a1
pyrus_communis pycom11g24870
rosa_chinensis RchiOBHm_Chr6g0290401
rosa_laevigata RLG00000012222
rosa_multiflora Rmu_sc0029478.1_g000001
rosa_rugosa Rorug06G0212500 Rorug06G0212600
rosa_samantha Rh6AG322500 Rh6BG329900 Rh6CG335900 Rh6DG322800
rosa_wichuraiana Rw6G027860 Rw6G027960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 77, 580
AciI CCGC 3 cut(s) 176, 561, 664
AclI AACGTT 3 cut(s) 18, 112, 337
AclWI GGATC 2 cut(s) 90, 582
AcuI CTGAAG 1 cut(s) 519
AfaI GTAC 4 cut(s) 220, 272, 459, 525
AgsI TTSAA 2 cut(s) 172, 530
AluBI AGCT 7 cut(s) 62, 182, 208, 382, 454, 509, 634
AluI AGCT 7 cut(s) 62, 182, 208, 382, 454, 509, 634
Alw26I GTCTC 2 cut(s) 289, 640
AlwI GGATC 2 cut(s) 90, 582
Ama87I CYCGRG 1 cut(s) 209
ApeKI GCWGC 2 cut(s) 353, 368
ArsI GACNNNNNNTTYG 2 cut(s) 599, 631
AspS9I GGNCC 1 cut(s) 315
AsuHPI GGTGA 1 cut(s) 419
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 1 cut(s) 315
BbsI GAAGAC 1 cut(s) 507
BbvI GCAGC 2 cut(s) 340, 355
BccI CCATC 3 cut(s) 107, 383, 565
BceAI ACGGC 1 cut(s) 603
BciVI GTATCC 1 cut(s) 235
BcoDI GTCTC 2 cut(s) 289, 640
BfaI CTAG 2 cut(s) 63, 183
BfuI GTATCC 1 cut(s) 235
BisI GCNGC 2 cut(s) 354, 369
BlpI GCTNAGC 1 cut(s) 378
BlsI GCNGC 2 cut(s) 355, 370
Bme18I GGWCC 1 cut(s) 315
BmeT110I CYCGRG 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 1 cut(s) 316
BmsI GCATC 1 cut(s) 136
BpiI GAAGAC 1 cut(s) 507
BplI GAGNNNNNCTC 4 cut(s) 269, 301, 525, 557
BpmI CTGGAG 1 cut(s) 207
Bpu1102I GCTNAGC 1 cut(s) 378
BpuEI CTTGAG 3 cut(s) 287, 326, 496
BsaI GGTCTC 1 cut(s) 289
Bse1I ACTGG 1 cut(s) 224
Bse3DI GCAATG 1 cut(s) 617
BseGI GGATG 3 cut(s) 31, 133, 151
BseMI GCAATG 1 cut(s) 617
BseMII CTCAG 1 cut(s) 371
BseNI ACTGG 1 cut(s) 224
BseXI GCAGC 2 cut(s) 340, 355
BsiHKCI CYCGRG 1 cut(s) 209
BslFI GGGAC 1 cut(s) 328
BsmAI GTCTC 2 cut(s) 289, 640
BsmFI GGGAC 1 cut(s) 328
BsmI GAATGC 2 cut(s) 178, 550
Bso31I GGTCTC 1 cut(s) 289
BsoBI CYCGRG 1 cut(s) 209
Bsp143I GATC 2 cut(s) 95, 574
Bsp1720I GCTNAGC 1 cut(s) 378
BspACI CCGC 3 cut(s) 176, 561, 664
BspCNI CTCAG 1 cut(s) 370
BspLI GGNNCC 1 cut(s) 316
BspPI GGATC 2 cut(s) 90, 582
BspTNI GGTCTC 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 617
BsrI ACTGG 1 cut(s) 224
BssMI GATC 2 cut(s) 95, 574
BssNAI GTATAC 1 cut(s) 581
Bst1107I GTATAC 1 cut(s) 581
BstC8I GCNNGC 1 cut(s) 636
BstDEI CTNAG 2 cut(s) 357, 378
BstF5I GGATG 3 cut(s) 31, 133, 151
BstKTI GATC 2 cut(s) 98, 577
BstMAI GTCTC 2 cut(s) 289, 640
BstMBI GATC 2 cut(s) 95, 574
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstV1I GCAGC 2 cut(s) 340, 355
BstV2I GAAGAC 1 cut(s) 507
BstX2I RGATCY 1 cut(s) 95
BstXI CCANNNNNNTGG 1 cut(s) 392
BstYI RGATCY 1 cut(s) 95
BstZ17I GTATAC 1 cut(s) 581
BsuI GTATCC 1 cut(s) 235
BtsCI GGATG 3 cut(s) 31, 133, 151
Cac8I GCNNGC 1 cut(s) 636
Cfr13I GGNCC 1 cut(s) 315
CseI GACGC 1 cut(s) 469
Csp6I GTAC 4 cut(s) 219, 271, 458, 524
CviAII CATG 3 cut(s) 386, 404, 558
CviQI GTAC 4 cut(s) 219, 271, 458, 524
DdeI CTNAG 2 cut(s) 357, 378
DpnI GATC 2 cut(s) 97, 576
DpnII GATC 2 cut(s) 95, 574
Eco31I GGTCTC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 315
Eco57I CTGAAG 1 cut(s) 519
Eco88I CYCGRG 1 cut(s) 209
EcoT22I ATGCAT 1 cut(s) 552
FaeI CATG 3 cut(s) 389, 407, 561
FaqI GGGAC 1 cut(s) 328
FatI CATG 3 cut(s) 385, 403, 557
FauI CCCGC 1 cut(s) 554
FblI GTMKAC 2 cut(s) 77, 580
Fnu4HI GCNGC 2 cut(s) 354, 369
FokI GGATG 3 cut(s) 38, 120, 158
Fsp4HI GCNGC 2 cut(s) 354, 369
FspBI CTAG 2 cut(s) 63, 183
GluI GCNGC 2 cut(s) 354, 369
GsuI CTGGAG 1 cut(s) 207
HgaI GACGC 1 cut(s) 469
Hin1II CATG 3 cut(s) 389, 407, 561
HinfI GANTC 2 cut(s) 29, 74
HphI GGTGA 1 cut(s) 419
Hpy166II GTNNAC 2 cut(s) 78, 581
Hpy188I TCNGA 3 cut(s) 138, 360, 437
Hpy188III TCNNGA 2 cut(s) 103, 118
Hpy8I GTNNAC 2 cut(s) 78, 581
HpyCH4IV ACGT 4 cut(s) 18, 112, 337, 623
HpyCH4V TGCA 3 cut(s) 149, 371, 550
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpyF3I CTNAG 2 cut(s) 357, 378
HpySE526I ACGT 4 cut(s) 18, 112, 337, 623
Hsp92II CATG 3 cut(s) 389, 407, 561
Kzo9I GATC 2 cut(s) 95, 574
LmnI GCTCC 2 cut(s) 53, 387
LpnPI CCDG 4 cut(s) 72, 237, 440, 510
Lsp1109I GCAGC 2 cut(s) 340, 355
LweI GCATC 1 cut(s) 136
MaeI CTAG 2 cut(s) 63, 183
MaeII ACGT 4 cut(s) 18, 112, 337, 623
MaeIII GTNAC 1 cut(s) 481
MalI GATC 2 cut(s) 97, 576
MboI GATC 2 cut(s) 95, 574
MboII GAAGA 4 cut(s) 102, 105, 133, 512
MfeI CAATTG 1 cut(s) 372
MflI RGATCY 1 cut(s) 95
MluCI AATT 2 cut(s) 372, 462
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 5 cut(s) 4, 271, 325, 613, 647
Mph1103I ATGCAT 1 cut(s) 552
MseI TTAA 5 cut(s) 45, 162, 260, 291, 627
MslI CAYNNNNRTG 1 cut(s) 390
MspA1I CMGCKG 1 cut(s) 454
MunI CAATTG 1 cut(s) 372
Mva1269I GAATGC 2 cut(s) 178, 550
MwoI GCNNNNNNNGC 1 cut(s) 374
NdeII GATC 2 cut(s) 95, 574
NlaIII CATG 3 cut(s) 389, 407, 561
NlaIV GGNNCC 1 cut(s) 316
NmuCI GTSAC 1 cut(s) 481
NsiI ATGCAT 1 cut(s) 552
PctI GAATGC 2 cut(s) 178, 550
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 2 cut(s) 355, 370
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
Psp1406I AACGTT 3 cut(s) 18, 112, 337
PspN4I GGNNCC 1 cut(s) 316
PspPI GGNCC 1 cut(s) 315
PsuI RGATCY 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 454
RsaI GTAC 4 cut(s) 220, 272, 459, 525
RsaNI GTAC 4 cut(s) 219, 271, 458, 524
RseI CAYNNNNRTG 1 cut(s) 390
SaqAI TTAA 5 cut(s) 45, 162, 260, 291, 627
SatI GCNGC 2 cut(s) 354, 369
Sau3AI GATC 2 cut(s) 95, 574
Sau96I GGNCC 1 cut(s) 315
SchI GAGTC 1 cut(s) 83
SfaNI GCATC 1 cut(s) 136
SinI GGWCC 1 cut(s) 315
SmiMI CAYNNNNRTG 1 cut(s) 390
SmlI CTYRAG 3 cut(s) 266, 305, 475
SmoI CTYRAG 3 cut(s) 266, 305, 475
Sse9I AATT 2 cut(s) 372, 462
SsiI CCGC 3 cut(s) 176, 561, 664
SspMI CTAG 2 cut(s) 63, 183
TaiI ACGT 4 cut(s) 21, 115, 340, 626
TaqI TCGA 3 cut(s) 72, 119, 488
TasI AATT 2 cut(s) 372, 462
TatI WGTACW 3 cut(s) 218, 270, 523
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 5 cut(s) 45, 162, 260, 291, 627
Tru9I TTAA 5 cut(s) 45, 162, 260, 291, 627
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 2 cut(s) 353, 368
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 315
XmiI GTMKAC 2 cut(s) 77, 580
XspI CTAG 2 cut(s) 63, 183
Zsp2I ATGCAT 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.