Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029478.1

Orthogroup ID

OG0012898

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1268

Gene Structure 1268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029478.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 634 bp

ctattttcagagggtttttgagtcaacctttgtgggaaggaggtctattgtgaaggaacggttttcgaagaagtacaggcatcctactttggatgcaaaacttacactcaggcgcctcaatgcggaggcgaggtgcatgacgaaagcaagacggcttggggtgcatactccggtgctttacgctgtggacactgtgctgcataccctgacatttgaatatgtggaggggccttctgtaaaagatgtgtttcttgagtttgggttaggaggtggtcgtgtggctgcggaacgtatggatgatattgcaatgcagattggtcaggctattggaaagctgcatgatggtggcctgattcatggggacttgaccacatctaacctgctaattagagctgctactaatcaagtggttgttattgatttcggtttgagctctacatcaacccttccagaagataaagctgtggatttgtatgtactggaacgagctttgctctcgatgcattcttcatgtgggaatgtgatggatcgcatacttgctgcatatcgcaaatcctcaaagcagtggtcatccacttttaacaaattagctcaagtgagacaacgaggccgaaagcgcaccatgattggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

210

Amino Acids

23.55

Weight (kDa)

10.0

Isoelectric Point (pI)

35.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26110 AT5G26110 AT5G26110
fragaria_vesca	FvH4_2g23150
malus_domestica	MD11G1280900.v1.1
prunus_persica	Prupe.8G236800_v2.0.a1
pyrus_communis	pycom11g24870
rosa_chinensis	RchiOBHm_Chr6g0290401
rosa_laevigata	RLG00000012222
rosa_multiflora	Rmu_sc0029478.1_g000001
rosa_rugosa	Rorug06G0212500 Rorug06G0212600
rosa_samantha	Rh6AG322500 Rh6BG329900 Rh6CG335900 Rh6DG322800
rosa_wichuraiana	Rw6G027860 Rw6G027960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	388
AccB1I	GGYRCC	1 cut(s)	112
AciI	CCGC	2 cut(s)	123, 285
AclWI	GGATC	1 cut(s)	535
AcyI	GRCGYC	1 cut(s)	113
AfaI	GTAC	2 cut(s)	75, 478
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	216
AluBI	AGCT	6 cut(s)	335, 393, 433, 462, 489, 591
AluI	AGCT	6 cut(s)	335, 393, 433, 462, 489, 591
Alw21I	GWGCWC	1 cut(s)	435
Alw26I	GTCTC	1 cut(s)	593
AlwI	GGATC	1 cut(s)	535
AoxI	GGCC	3 cut(s)	228, 347, 608
ApeKI	GCWGC	5 cut(s)	197, 282, 335, 393, 540
ArsI	GACNNNNNNTTYG	2 cut(s)	552, 584
AspLEI	GCGC	2 cut(s)	115, 619
AspS9I	GGNCC	1 cut(s)	228
AsuII	TTCGAA	1 cut(s)	66
BanI	GGYRCC	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	435
Bbv12I	GWGCWC	1 cut(s)	435
BbvI	GCAGC	5 cut(s)	184, 269, 322, 380, 527
BccI	CCATC	2 cut(s)	336, 518
BceAI	ACGGC	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	593
BfoI	RGCGCY	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	388
BisI	GCNGC	5 cut(s)	198, 283, 336, 394, 541
BlsI	GCNGC	5 cut(s)	199, 284, 337, 395, 542
BmgT120I	GGNCC	1 cut(s)	228
BmiI	GGNNCC	2 cut(s)	114, 229
BmsI	GCATC	3 cut(s)	83, 89, 490
BplI	GAGNNNNNCTC	2 cut(s)	478, 510
Bpu14I	TTCGAA	1 cut(s)	66
BpuEI	CTTGAG	2 cut(s)	273, 577
BsaHI	GRCGYC	1 cut(s)	113
BsaWI	WCCGGW	1 cut(s)	170
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	484
Bse3DI	GCAATG	1 cut(s)	313
BseGI	GGATG	4 cut(s)	80, 98, 302, 570
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	122
BseNI	ACTGG	1 cut(s)	484
BseXI	GCAGC	5 cut(s)	184, 269, 322, 380, 527
BshFI	GGCC	3 cut(s)	230, 349, 610
BshNI	GGYRCC	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	435
BsiSI	CCGG	1 cut(s)	171
BslFI	GGGAC	1 cut(s)	375
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	593
BsmFI	GGGAC	1 cut(s)	375
BsmI	GAATGC	1 cut(s)	503
BsnI	GGCC	3 cut(s)	230, 349, 610
Bsp119I	TTCGAA	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	435
Bsp143I	GATC	1 cut(s)	527
BspACI	CCGC	2 cut(s)	123, 285
BspANI	GGCC	3 cut(s)	230, 349, 610
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	2 cut(s)	114, 229
BspMI	ACCTGC	1 cut(s)	388
BspPI	GGATC	1 cut(s)	535
BspT104I	TTCGAA	1 cut(s)	66
BspT107I	GGYRCC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	313
BsrI	ACTGG	1 cut(s)	484
BssMI	GATC	1 cut(s)	527
BssNI	GRCGYC	1 cut(s)	113
Bst4CI	ACNGT	2 cut(s)	61, 194
BstACI	GRCGYC	1 cut(s)	113
BstBI	TTCGAA	1 cut(s)	66
BstDEI	CTNAG	1 cut(s)	108
BstF5I	GGATG	4 cut(s)	80, 98, 302, 570
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	2 cut(s)	115, 619
BstKTI	GATC	1 cut(s)	530
BstMAI	GTCTC	1 cut(s)	593
BstMBI	GATC	1 cut(s)	527
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 500, 616
BstV1I	GCAGC	5 cut(s)	184, 269, 322, 380, 527
BsuRI	GGCC	3 cut(s)	230, 349, 610
BtsCI	GGATG	4 cut(s)	80, 98, 302, 570
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	2 cut(s)	190, 570
BveI	ACCTGC	1 cut(s)	388
CfoI	GCGC	2 cut(s)	115, 619
Cfr13I	GGNCC	1 cut(s)	228
Csp6I	GTAC	2 cut(s)	74, 477
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CviAII	CATG	5 cut(s)	137, 339, 357, 511, 623
CviQI	GTAC	2 cut(s)	74, 477
DdeI	CTNAG	1 cut(s)	108
DinI	GGCGCC	1 cut(s)	114
DpnI	GATC	1 cut(s)	529
DpnII	GATC	1 cut(s)	527
Ecl136II	GAGCTC	1 cut(s)	433
Eco24I	GRGCYC	1 cut(s)	435
Eco53kI	GAGCTC	1 cut(s)	433
EcoICRI	GAGCTC	1 cut(s)	433
EcoO109I	RGGNCCY	1 cut(s)	228
EcoT22I	ATGCAT	1 cut(s)	505
EcoT38I	GRGCYC	1 cut(s)	435
EgeI	GGCGCC	1 cut(s)	114
EheI	GGCGCC	1 cut(s)	114
FaeI	CATG	5 cut(s)	140, 342, 360, 514, 626
FaqI	GGGAC	1 cut(s)	375
FatI	CATG	5 cut(s)	136, 338, 356, 510, 622
Fnu4HI	GCNGC	5 cut(s)	198, 283, 336, 394, 541
FokI	GGATG	4 cut(s)	67, 105, 309, 557
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	5 cut(s)	198, 283, 336, 394, 541
GlaI	GCGC	2 cut(s)	114, 618
GluI	GCNGC	5 cut(s)	198, 283, 336, 394, 541
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	3 cut(s)	230, 349, 610
HapII	CCGG	1 cut(s)	171
HhaI	GCGC	2 cut(s)	115, 619
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	5 cut(s)	140, 342, 360, 514, 626
Hin6I	GCGC	2 cut(s)	113, 617
HinP1I	GCGC	2 cut(s)	113, 617
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	2 cut(s)	21, 353
HpaII	CCGG	1 cut(s)	171
Hpy166II	GTNNAC	2 cut(s)	25, 188
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	3 cut(s)	252, 450, 497
Hpy8I	GTNNAC	2 cut(s)	25, 188
HpyAV	CCTTC	4 cut(s)	31, 47, 241, 456
HpyCH4III	ACNGT	2 cut(s)	61, 194
HpyCH4IV	ACGT	1 cut(s)	290
HpyCH4V	TGCA	9 cut(s)	96, 136, 164, 200, 306, 311, 338, 503, 543
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 500, 616
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	290
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	5 cut(s)	140, 342, 360, 514, 626
HspAI	GCGC	2 cut(s)	113, 617
KasI	GGCGCC	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	527
LpnPI	CCDG	9 cut(s)	62, 95, 184, 219, 306, 363, 393, 463, 465
Lsp1109I	GCAGC	5 cut(s)	184, 269, 322, 380, 527
LweI	GCATC	3 cut(s)	83, 89, 490
MaeII	ACGT	1 cut(s)	290
MalI	GATC	1 cut(s)	529
MboI	GATC	1 cut(s)	527
MboII	GAAGA	3 cut(s)	80, 465, 499
MhlI	GDGCHC	1 cut(s)	435
MluCI	AATT	2 cut(s)	385, 585
Mly113I	GGCGCC	1 cut(s)	113
MlyI	GAGTC	1 cut(s)	30
MnlI	CCTC	9 cut(s)	4, 34, 119, 124, 126, 218, 261, 566, 600
Mph1103I	ATGCAT	1 cut(s)	505
MseI	TTAA	1 cut(s)	580
MslI	CAYNNNNRTG	1 cut(s)	343
MspI	CCGG	1 cut(s)	171
Mva1269I	GAATGC	1 cut(s)	503
MwoI	GCNNNNNNNGC	3 cut(s)	161, 500, 616
NarI	GGCGCC	1 cut(s)	113
NdeII	GATC	1 cut(s)	527
NlaIII	CATG	5 cut(s)	140, 342, 360, 514, 626
NlaIV	GGNNCC	2 cut(s)	114, 229
NsiI	ATGCAT	1 cut(s)	505
NspV	TTCGAA	1 cut(s)	66
PctI	GAATGC	1 cut(s)	503
PfeI	GAWTC	1 cut(s)	353
PkrI	GCNGC	5 cut(s)	199, 284, 337, 395, 542
PleI	GAGTC	1 cut(s)	29
PluTI	GGCGCC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	435
PspN4I	GGNNCC	2 cut(s)	114, 229
PspPI	GGNCC	1 cut(s)	228
RsaI	GTAC	2 cut(s)	75, 478
RsaNI	GTAC	2 cut(s)	74, 477
RseI	CAYNNNNRTG	1 cut(s)	343
SacI	GAGCTC	1 cut(s)	435
SaqAI	TTAA	1 cut(s)	580
SatI	GCNGC	5 cut(s)	198, 283, 336, 394, 541
Sau3AI	GATC	1 cut(s)	527
Sau96I	GGNCC	1 cut(s)	228
SchI	GAGTC	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	435
SfaNI	GCATC	3 cut(s)	83, 89, 490
SfoI	GGCGCC	1 cut(s)	114
SfuI	TTCGAA	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	343
SmlI	CTYRAG	2 cut(s)	252, 592
SmoI	CTYRAG	2 cut(s)	252, 592
Sse9I	AATT	2 cut(s)	385, 585
SsiI	CCGC	2 cut(s)	123, 285
SspDI	GGCGCC	1 cut(s)	112
SstI	GAGCTC	1 cut(s)	435
TaaI	ACNGT	2 cut(s)	61, 194
TaiI	ACGT	1 cut(s)	293
TaqI	TCGA	2 cut(s)	66, 498
TasI	AATT	2 cut(s)	385, 585
TatI	WGTACW	2 cut(s)	73, 476
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	1 cut(s)	580
Tru9I	TTAA	1 cut(s)	580
TscAI	CASTG	2 cut(s)	197, 570
TseI	GCWGC	5 cut(s)	197, 282, 335, 393, 540
TspDTI	ATGAA	2 cut(s)	345, 499
TspRI	CASTG	2 cut(s)	197, 570
Zsp2I	ATGCAT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.