AT5G28300
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
10292279 .. 10295283
3005 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G28300.1

Sequence Viewer

Length: 1860 bp
ATGTTTGATGGTGGAGTACCTGAGCAGATCCACCGTTTCATAGCTTCTCCACCGCCACCGCCTCCGCTTCCGCCGCATCAACCGGCGGCGGAAAGATCACTACCTTTTCCTGTCTCATTCTCTTCCTTTAACACCAATCATCAACCTCAGCATATGTTGAGCTTGGATAGCCGTAAGATCATTCACCATCATCATCATCATCATCACCATGACATCAAAGATGGTGGTGCTACTACTGGTGAGTGGATAGGTCAGACGGATCATGATGATAGCGATAATCATCATCAACATCATCATCATCATCCATGGTGTAGTGATGAAGTTCTTGCTCTTCTTAGGTTCAGATCTACAGTGGAGAATTGGTTCCCTGAATTCACTTGGGAGCATACTTCAAGAAAGTTGGCAGAAGTTGGTTTTAAGAGGAGTCCACAAGAATGCAAAGAGAAATTTGAAGAAGAAGAGAGAAGATATTTCAATAGCAACAACAACAACAACAACAACACTAATGATCATCAACACATCGGCAATTATAACAACAAGGGAAATAATTATAGGATATTTAGTGAGGTTGAAGAGTTTTATCATCATGGTCATGACAATGAACATGTTTCATCAGAAGTTGGGGATAACCAAAACAAGAGGACCAATTTAGTAGAAGGAAAAGGAAACGTGGGAGAAACGGTACAAGACTTAATGGCGGAGGACAAATTAAGAGATCAGGATCAGGGTCAAGTAGAAGAAGCATCAATGGAGAATCAAAGAAACTCTATTGAGGTTGGAAAAGTTGGAAACGTAGAAGATGATGCCAAGTCATCATCATCATCAAGCTTGATGATGATCATGAAGGAGAAGAAGAGGAAGAAGAGGAAGAAAGAGAAAGAGAGGTTTGGTGTGTTAAAAGGGTTTTGTGAGGGTCTAGTGAGGAACATGATAGCTCAACAAGAGGAGATGCATAAGAAACTCCTGGAAGATATGGTGAAGAAGGAAGAAGAGAAGATAGCGAGAGAGGAAGCTTGGAAGAAGCAAGAGATTGAGAGAGTTAACAAAGAGGTAGAGATTAGAGCACAAGAACAAGCCATGGCTAGTGATAGAAACACCAACATCATCAAGTTCATATCCAAGTTTACAGACCATGATCTTGATGTTGTCCAAAACCCAACAAGCCCTTCTCAAGACTCATCTTCTTTAGCTCTACGAAAAACCCAAGGCAGAAGAAAGTTTCAAACTTCATCATCACTATTACCTCAAACCCTAACTCCACATAACCTTTTAACCATTGACAAATCACTTGAACCTTTTTCTACTAAAACCCTAAAACCCAAAAACCAAAACCCAAAACCTCCAAAAAGCGATGATAAAAGTGATCTTGGCAAGAGATGGCCAAAGGATGAAGTGTTGGCTCTGATCAACATTAGAAGAAGTATCAGTAACATGAATGATGATGATCATAAAGATGAGAACTCATTATCAACATCTTCAAAAGCTGTTCCATTATGGGAAAGAATATCCAAGAAAATGTTGGAGATTGGGTACAAGAGAAGTGCCAAAAGATGCAAAGAGAAATGGGAAAACATCAACAAGTATTTTAGGAAGACAAAAGATGTTAACAAGAAGAGACCACTTGACTCAAGGACTTGTCCTTATTTTCACCAACTCACAGCTTTATACAGCCAACCACCAACAGGGACCACCGCCACCACCGCCACCACGGCCACGTCAGCCAGAGATCTAGACACCCGACCCGAGGAAAACCGGGTTGGATCCCAAGATCCTGATATTTCTGTACCCATGCATGTAGATGGAGATGGTGCTGGCGATAAAAGCAATGTTCAGTTTTCAGGTTTCGATCTTGAGTTCTAA

Protein Analysis

619

Amino Acids

71.28

Weight (kDa)

6.74

Isoelectric Point (pI)

56.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 101 - 173 6.6e-13 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_4 PF13837 458 - 554 4.3e-21 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 531
AclWI GGATC 6 cut(s) 22, 267, 729, 1755, 1763, 1768
AcoI YGGCCR 2 cut(s) 1379, 1710
AcsI RAATTY 2 cut(s) 371, 446
AfaI GTAC 4 cut(s) 18, 684, 1532, 1785
AfiI CCNNNNNNNGG 2 cut(s) 1682, 1744
AflIII ACRYGT 1 cut(s) 604
AgsI TTSAA 7 cut(s) 393, 452, 475, 572, 1223, 1292, 1479
AjiI CACGTC 1 cut(s) 1716
AjnI CCWGG 1 cut(s) 963
AjuI GAANNNNNNNTTGG 4 cut(s) 1150, 1182, 1740, 1772
AloI GAACNNNNNNTCC 2 cut(s) 347, 379
AluBI AGCT 8 cut(s) 44, 162, 828, 935, 1013, 1190, 1484, 1661
AluI AGCT 8 cut(s) 44, 162, 828, 935, 1013, 1190, 1484, 1661
Alw21I GWGCWC 1 cut(s) 1066
Alw26I GTCTC 2 cut(s) 118, 1609
AlwI GGATC 6 cut(s) 22, 267, 729, 1755, 1763, 1768
Ama87I CYCGRG 1 cut(s) 1742
AoxI GGCC 2 cut(s) 1379, 1710
ApoI RAATTY 2 cut(s) 371, 446
Asp700I GAANNNNTTC 1 cut(s) 362
AspS9I GGNCC 2 cut(s) 642, 1686
AsuC2I CCSGG 1 cut(s) 1754
AsuHPI GGTGA 5 cut(s) 176, 197, 251, 988, 1640
AvaI CYCGRG 1 cut(s) 1742
AvaII GGWCC 2 cut(s) 642, 1686
BalI TGGCCA 1 cut(s) 1381
BamHI GGATCC 1 cut(s) 1760
BbsI GAAGAC 1 cut(s) 1598
Bbv12I GWGCWC 1 cut(s) 1066
BbvCI CCTCAGC 1 cut(s) 147
BccI CCATC 6 cut(s) 2, 195, 215, 1371, 1793, 1799
BceAI ACGGC 2 cut(s) 156, 1725
BciT130I CCWGG 1 cut(s) 965
BclI TGATCA 4 cut(s) 508, 837, 1404, 1444
BcnI CCSGG 1 cut(s) 1754
BcoDI GTCTC 2 cut(s) 118, 1609
BfaI CTAG 3 cut(s) 917, 1083, 1730
BfmI CTRYAG 1 cut(s) 348
BglI GCCNNNNNGGC 1 cut(s) 1709
BglII AGATCT 2 cut(s) 344, 1726
BisI GCNGC 2 cut(s) 74, 87
BlsI GCNGC 2 cut(s) 75, 88
Bme1390I CCNGG 2 cut(s) 965, 1754
Bme18I GGWCC 2 cut(s) 642, 1686
BmeT110I CYCGRG 1 cut(s) 1742
BmgBI CACGTC 1 cut(s) 1716
BmgT120I GGNCC 2 cut(s) 642, 1686
BmiI GGNNCC 3 cut(s) 365, 1687, 1762
BmrFI CCNGG 2 cut(s) 965, 1754
BmsI GCATC 5 cut(s) 85, 752, 793, 939, 1541
BpiI GAAGAC 1 cut(s) 1598
Bpu10I CCTNAGC 2 cut(s) 21, 147
BpuEI CTTGAG 2 cut(s) 1155, 1612
BpuMI CCSGG 1 cut(s) 1754
BsaBI GATNNNNATC 4 cut(s) 279, 720, 836, 1443
BsaI GGTCTC 1 cut(s) 1609
BsaJI CCNNGG 5 cut(s) 305, 1077, 1204, 1707, 1743
BsaXI ACNNNNNCTCC 8 cut(s) 347, 377, 666, 696, 1240, 1270, 1514, 1544
Bsc4I CCNNNNNNNGG 2 cut(s) 1682, 1744
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 241
Bse3DI GCAATG 1 cut(s) 1831
Bse8I GATNNNNATC 4 cut(s) 279, 720, 836, 1443
BseBI CCWGG 1 cut(s) 965
BseDI CCNNGG 5 cut(s) 305, 1077, 1204, 1707, 1743
BseGI GGATG 2 cut(s) 301, 1393
BseJI GATNNNNATC 4 cut(s) 279, 720, 836, 1443
BseLI CCNNNNNNNGG 2 cut(s) 1682, 1744
BseMI GCAATG 1 cut(s) 1831
BseMII CTCAG 2 cut(s) 12, 161
BseNI ACTGG 1 cut(s) 241
BseRI GAGGAG 2 cut(s) 436, 959
BshFI GGCC 2 cut(s) 1381, 1712
BsiHKAI GWGCWC 1 cut(s) 1066
BsiHKCI CYCGRG 1 cut(s) 1742
BsiSI CCGG 2 cut(s) 83, 1753
BslFI GGGAC 1 cut(s) 1699
BslI CCNNNNNNNGG 2 cut(s) 1682, 1744
BsmAI GTCTC 2 cut(s) 118, 1609
BsmFI GGGAC 1 cut(s) 1699
BsmI GAATGC 1 cut(s) 440
BsnI GGCC 2 cut(s) 1381, 1712
Bso31I GGTCTC 1 cut(s) 1609
BsoBI CYCGRG 1 cut(s) 1742
Bsp1286I GDGCHC 1 cut(s) 1066
Bsp19I CCATGG 2 cut(s) 305, 1077
BspANI GGCC 2 cut(s) 1381, 1712
BspCNI CTCAG 2 cut(s) 13, 160
BspHI TCATGA 3 cut(s) 262, 592, 840
BspLI GGNNCC 3 cut(s) 365, 1687, 1762
BspPI GGATC 6 cut(s) 22, 267, 729, 1755, 1763, 1768
BspQI GCTCTTC 1 cut(s) 336
BspTNI GGTCTC 1 cut(s) 1609
BsrDI GCAATG 1 cut(s) 1831
BsrFI RCCGGY 1 cut(s) 82
BsrI ACTGG 1 cut(s) 241
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 5 cut(s) 305, 1077, 1204, 1707, 1743
BssT1I CCWWGG 3 cut(s) 305, 1077, 1204
Bst2UI CCWGG 1 cut(s) 965
Bst4CI ACNGT 3 cut(s) 35, 352, 682
Bst6I CTCTTC 8 cut(s) 127, 336, 453, 567, 848, 857, 984, 1607
BstC8I GCNNGC 1 cut(s) 1813
BstDEI CTNAG 3 cut(s) 21, 147, 335
BstDSI CCRYGG 3 cut(s) 305, 1077, 1707
BstF5I GGATG 2 cut(s) 301, 1393
BstMAI GTCTC 2 cut(s) 118, 1609
BstMWI GCNNNNNNNGC 6 cut(s) 73, 168, 1700, 1709, 1718, 1821
BstNI CCWGG 1 cut(s) 965
BstNSI RCATGY 2 cut(s) 608, 1796
BstSCI CCNGG 2 cut(s) 963, 1752
BstSFI CTRYAG 1 cut(s) 348
BstV2I GAAGAC 1 cut(s) 1598
BstX2I RGATCY 5 cut(s) 27, 344, 1726, 1760, 1768
BstYI RGATCY 5 cut(s) 27, 344, 1726, 1760, 1768
BsuRI GGCC 2 cut(s) 1381, 1712
BtgI CCRYGG 3 cut(s) 305, 1077, 1707
BtgZI GCGATG 1 cut(s) 1365
BtrI CACGTC 1 cut(s) 1716
BtsCI GGATG 2 cut(s) 301, 1393
BtsIMutI CAGTG 1 cut(s) 357
Cac8I GCNNGC 1 cut(s) 1813
CciI TCATGA 3 cut(s) 262, 592, 840
Cfr10I RCCGGY 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 642, 1686
Csp6I GTAC 4 cut(s) 17, 683, 1531, 1784
CspCI CAANNNNNGTGG 2 cut(s) 205, 240
CviQI GTAC 4 cut(s) 17, 683, 1531, 1784
DdeI CTNAG 3 cut(s) 21, 147, 335
EaeI YGGCCR 2 cut(s) 1379, 1710
Eam1104I CTCTTC 8 cut(s) 127, 336, 453, 567, 848, 857, 984, 1607
EarI CTCTTC 8 cut(s) 127, 336, 453, 567, 848, 857, 984, 1607
EciI GGCGGA 3 cut(s) 60, 104, 713
Eco130I CCWWGG 3 cut(s) 305, 1077, 1204
Eco31I GGTCTC 1 cut(s) 1609
Eco47I GGWCC 2 cut(s) 642, 1686
Eco88I CYCGRG 1 cut(s) 1742
EcoRI GAATTC 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 963
EcoT14I CCWWGG 3 cut(s) 305, 1077, 1204
EcoT22I ATGCAT 2 cut(s) 954, 1794
ErhI CCWWGG 3 cut(s) 305, 1077, 1204
FaqI GGGAC 1 cut(s) 1699
FauNDI CATATG 1 cut(s) 153
FbaI TGATCA 4 cut(s) 508, 837, 1404, 1444
Fnu4HI GCNGC 2 cut(s) 74, 87
FokI GGATG 2 cut(s) 288, 1400
Fsp4HI GCNGC 2 cut(s) 74, 87
FspBI CTAG 3 cut(s) 917, 1083, 1730
GluI GCNGC 2 cut(s) 74, 87
HaeIII GGCC 2 cut(s) 1381, 1712
HapII CCGG 2 cut(s) 83, 1753
HincII GTYRAC 2 cut(s) 1042, 1606
HindII GTYRAC 2 cut(s) 1042, 1606
HindIII AAGCTT 2 cut(s) 826, 1011
HinfI GANTC 4 cut(s) 424, 754, 1175, 1625
HpaI GTTAAC 2 cut(s) 1042, 1606
HpaII CCGG 2 cut(s) 83, 1753
HphI GGTGA 5 cut(s) 176, 197, 251, 988, 1640
Hpy166II GTNNAC 4 cut(s) 428, 1042, 1125, 1606
Hpy188I TCNGA 4 cut(s) 255, 344, 616, 1404
Hpy8I GTNNAC 4 cut(s) 428, 1042, 1125, 1606
HpyAV CCTTC 4 cut(s) 650, 838, 976, 1176
HpyCH4III ACNGT 3 cut(s) 35, 352, 682
HpyCH4IV ACGT 3 cut(s) 669, 792, 1715
HpyCH4V TGCA 4 cut(s) 438, 952, 1554, 1792
HpyF10VI GCNNNNNNNGC 6 cut(s) 73, 168, 1700, 1709, 1718, 1821
HpyF3I CTNAG 3 cut(s) 21, 147, 335
HpySE526I ACGT 3 cut(s) 669, 792, 1715
Ksp22I TGATCA 4 cut(s) 508, 837, 1404, 1444
KspAI GTTAAC 2 cut(s) 1042, 1606
LguI GCTCTTC 1 cut(s) 336
LmnI GCTCC 1 cut(s) 382
LweI GCATC 5 cut(s) 85, 752, 793, 939, 1541
MaeI CTAG 3 cut(s) 917, 1083, 1730
MaeII ACGT 3 cut(s) 669, 792, 1715
MaeIII GTNAC 1 cut(s) 1427
MflI RGATCY 5 cut(s) 27, 344, 1726, 1760, 1768
MhlI GDGCHC 1 cut(s) 1066
MlsI TGGCCA 1 cut(s) 1381
MluCI AATT 7 cut(s) 358, 371, 446, 526, 547, 646, 707
MluNI TGGCCA 1 cut(s) 1381
MlyI GAGTC 3 cut(s) 433, 1169, 1619
MmeI TCCRAC 4 cut(s) 757, 766, 1500, 1738
Mox20I TGGCCA 1 cut(s) 1381
Mph1103I ATGCAT 2 cut(s) 954, 1794
MroXI GAANNNNTTC 1 cut(s) 362
MscI TGGCCA 1 cut(s) 1381
MseI TTAA 8 cut(s) 129, 417, 692, 710, 896, 1041, 1271, 1605
MslI CAYNNNNRTG 6 cut(s) 207, 433, 591, 597, 1452, 1797
Msp20I TGGCCA 1 cut(s) 1381
MspI CCGG 2 cut(s) 83, 1753
MspR9I CCNGG 2 cut(s) 965, 1754
Mva1269I GAATGC 1 cut(s) 440
MvaI CCWGG 1 cut(s) 965
MwoI GCNNNNNNNGC 6 cut(s) 73, 168, 1700, 1709, 1718, 1821
NciI CCSGG 1 cut(s) 1754
NcoI CCATGG 2 cut(s) 305, 1077
NdeI CATATG 1 cut(s) 153
NlaIV GGNNCC 3 cut(s) 365, 1687, 1762
NsiI ATGCAT 2 cut(s) 954, 1794
NspI RCATGY 2 cut(s) 608, 1796
PagI TCATGA 3 cut(s) 262, 592, 840
PciI ACATGT 1 cut(s) 604
PciSI GCTCTTC 1 cut(s) 336
PctI GAATGC 1 cut(s) 440
PdmI GAANNNNTTC 1 cut(s) 362
PfeI GAWTC 1 cut(s) 754
PfoI TCCNGGA 1 cut(s) 963
PkrI GCNGC 2 cut(s) 75, 88
PleI GAGTC 3 cut(s) 432, 1169, 1619
PpsI GAGTC 3 cut(s) 432, 1169, 1619
PscI ACATGT 1 cut(s) 604
PsiI TTATAA 1 cut(s) 531
Psp6I CCWGG 1 cut(s) 963
PspGI CCWGG 1 cut(s) 963
PspN4I GGNNCC 3 cut(s) 365, 1687, 1762
PspPI GGNCC 2 cut(s) 642, 1686
PsuI RGATCY 5 cut(s) 27, 344, 1726, 1760, 1768
RsaI GTAC 4 cut(s) 18, 684, 1532, 1785
RsaNI GTAC 4 cut(s) 17, 683, 1531, 1784
RseI CAYNNNNRTG 6 cut(s) 207, 433, 591, 597, 1452, 1797
SapI GCTCTTC 1 cut(s) 336
SaqAI TTAA 8 cut(s) 129, 417, 692, 710, 896, 1041, 1271, 1605
SatI GCNGC 2 cut(s) 74, 87
Sau96I GGNCC 2 cut(s) 642, 1686
SchI GAGTC 3 cut(s) 433, 1169, 1619
ScrFI CCNGG 2 cut(s) 965, 1754
SduI GDGCHC 1 cut(s) 1066
SfaNI GCATC 5 cut(s) 85, 752, 793, 939, 1541
SfcI CTRYAG 1 cut(s) 348
SinI GGWCC 2 cut(s) 642, 1686
SmiMI CAYNNNNRTG 6 cut(s) 207, 433, 591, 597, 1452, 1797
SmlI CTYRAG 3 cut(s) 1170, 1627, 1850
SmoI CTYRAG 3 cut(s) 1170, 1627, 1850
Sse9I AATT 7 cut(s) 358, 371, 446, 526, 547, 646, 707
SspMI CTAG 3 cut(s) 917, 1083, 1730
StyD4I CCNGG 2 cut(s) 963, 1752
StyI CCWWGG 3 cut(s) 305, 1077, 1204
TaaI ACNGT 3 cut(s) 35, 352, 682
TaiI ACGT 3 cut(s) 672, 795, 1718
TaqI TCGA 1 cut(s) 1845
TasI AATT 7 cut(s) 358, 371, 446, 526, 547, 646, 707
TauI GCSGC 2 cut(s) 76, 89
TfiI GAWTC 1 cut(s) 754
Tru1I TTAA 8 cut(s) 129, 417, 692, 710, 896, 1041, 1271, 1605
Tru9I TTAA 8 cut(s) 129, 417, 692, 710, 896, 1041, 1271, 1605
TscAI CASTG 1 cut(s) 357
TspDTI ATGAA 9 cut(s) 28, 333, 600, 615, 857, 1102, 1218, 1404, 1448
TspGWI ACGGA 1 cut(s) 272
TspRI CASTG 1 cut(s) 357
VpaK11BI GGWCC 2 cut(s) 642, 1686
XapI RAATTY 2 cut(s) 371, 446
XbaI TCTAGA 1 cut(s) 1729
XceI RCATGY 2 cut(s) 608, 1796
XcmI CCANNNNNNNNNTGG 1 cut(s) 1516
XmnI GAANNNNTTC 1 cut(s) 362
XspI CTAG 3 cut(s) 917, 1083, 1730
Zsp2I ATGCAT 2 cut(s) 954, 1794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.