MD12G1238000.v1.1
MYB Family

Trihelix transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
31139420 .. 31142165
2746 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1238000.v1.1.491

Sequence Viewer

Length: 1971 bp
ATGTTTGATGGAGTCCCAGCTGAGCAGTTGCACCAATTCATAGCATCCTCAAGAACTTCCCTCCCTCTTCCTCACCCTCTCCCTCTTCCTCACCCTCTCCCTCTCCCTCTCTCCTCCTTCCCTCCTCCACCATCAAACAATAGTATTAATACCTTCCCTGTCCCTGCTGCTACTCCCTTTGACCCCTACAACAATAACAACCCTTCTCATCTTCATCATCATCAACTTCTGCAAATTCAACCCCATCAGCTTCATCAGAATAATCAGCTTCTGCAACTGCACCGCCAATCCGCCGCCATCCCCAAAAATCTCGAGGAGAAAGAGGAACGCTCTAGTACTGTTTCAATCTCCATAAACAATAATTTGGAGATCGAAAGAGAGAGATCTTCATCGATACCGGCATCATCAGATGTATCAATCATTAGTGATTCTTGGAGTAATGATGAATTGCTTGCACTTCTCAGGATCAGATCTAACATGGAGATTTGGTTCCCTGAGTTCACTTGGGAACATATCTCAAGGAATCTAGCTGAGCTTGGTTTCAAAAGGAGTGCAGAGAAATGCAAAGAGAAGTTTGAAGAAGAAAGCAGATACTTCAACAACATTAACTTCACCAAAAACTACAGTTTTCTCAGTGACCTCGAACAACTCTGTCAAGGTGGTGGTGATGCTCATCAGCAAAACGCTGATGATCATCAGGAAGCTCCCGGGGATAAAAATAATGAGAAAGAAAAGGTTGAAAAGCCCAGTGATGATGGAGATCATCAAGACTCAACGAGAAATGAAACAATTGTTGGGAACAGTATTGGTGTGATTACCACCGAGCCGCTGAACCCTGAGGAGCACAATGAGAAAGAGGTAGTAGTGGAAACTAGATCAAAGAACAATACTAAGAAGAGGAAAAGGCAAAGGGAATTTGAAATGCTCAAGGGTTTCTGTGAGGACATTGTGAACAGGATGATGGCTCGGCAGGAAGAGATGCACGACAAGCTTCTTGAAGAAATGATGAAGAGAAACGAGGAGAAGCTTGCGAGGGAAGAAGCATGGAAGAAGCAAGAGACGGATAGGATGAACAAGGAGCTCGAGATTATGGCGAGAGAACAAGCCGTTGCTGGTGATCGACAAGCTACAATCAACAAATTCTTGAAGAAGTTCACATCGTCGTCCAGCAATTCTAGTACTTCCACTTCGTCTTCTCCGATTCAAGCACAAAACCCTAATCGTCCTACGTGTCACGATGTTAGTGGCCGAAAAGAACTTGATCATCATCAAGAAAAAGAAAATAACCCAACAACGCCTAGTTCATTAACTGAAAGTACTCTTGCACCCCAAAGTCCTAGCTCAAGTACTCTTGCCCCGACTCCCATTGCCGTTCCAACCATGACGATTTTATCTAGAGCTACTGCTGCTGCTGCTGTTGTCGTCGCACCTCCTGAAAACCCTAGTTCTGATGATGTCATCATCAACTCTCAAAACCCTAGTTCCATTAGTCATGACAAACAAGACCTCGGAAAGAGGTGGCCGAGAGATGAAGTGCTGGCTCTGATAAACTTAAGGTGCAGCCTCTTCAACAATGGCGGTGGCGGCGATCAGGACAAGGACGGAGGAGTCGTGATGAAAGCTCCTCTTTGGGAGAGAATCTCACAAGGGATGTTAGAGATGGGTTACACGAGGAGTGCCAAGAGGTGCAAAGAGAAATGGGAGAACATTAACAAGTACTTTAGAAAAACAAAAGATGTTAACAAGAAGAGGTCACTTGACTCTAGGACTTGTCCTTATTTTCATCAACTAAGCTCTTTGTACAATCAAGGGATACTTGTACCGCCTTCTGATCAAGCACCAGAAGACCGCCCCGCTTCGCCGGAAAACCATTCTCTAGGTGATGATGATTCAACTAAGCATGGTGAAGGTGAGAAAAACAACAATACGGTACAGCAAGCACCGCCACCAGCTTTTGATTCTGAATTCTAA

Protein Analysis

657

Amino Acids

73.98

Weight (kDa)

5.7

Isoelectric Point (pI)

64.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 143 - 203 1.1e-10 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_4 PF13837 505 - 599 2.4e-19 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1607
AclWI GGATC 1 cut(s) 473
AcoI YGGCCR 2 cut(s) 1246, 1520
AcsI RAATTY 4 cut(s) 234, 914, 1139, 1964
AfaI GTAC 8 cut(s) 337, 1180, 1318, 1348, 1718, 1802, 1821, 1932
AflII CTTAAG 1 cut(s) 1552
AflIII ACRYGT 1 cut(s) 1229
AjuI GAANNNNNNNTTGG 2 cut(s) 777, 809
AloI GAACNNNNNNTCC 2 cut(s) 473, 505
Alw21I GWGCWC 2 cut(s) 846, 1083
Alw26I GTCTC 1 cut(s) 1052
AlwI GGATC 1 cut(s) 473
AlwNI CAGNNNCTG 1 cut(s) 271
Ama87I CYCGRG 3 cut(s) 311, 707, 1082
AoxI GGCC 2 cut(s) 1246, 1520
ApeKI GCWGC 5 cut(s) 167, 1406, 1409, 1412, 1560
ApoI RAATTY 4 cut(s) 234, 914, 1139, 1964
AseI ATTAAT 1 cut(s) 147
Asp700I GAANNNNTTC 1 cut(s) 1151
AsuC2I CCSGG 2 cut(s) 708, 709
AsuHPI GGTGA 8 cut(s) 65, 83, 604, 677, 1127, 1892, 1916, 1922
AvaI CYCGRG 3 cut(s) 311, 707, 1082
AxyI CCTNAGG 1 cut(s) 837
BanII GRGCYC 1 cut(s) 1083
BarI GAAGNNNNNNTAC 2 cut(s) 1171, 1203
BauI CACGAG 1 cut(s) 1669
BbsI GAAGAC 2 cut(s) 1185, 1851
Bbv12I GWGCWC 2 cut(s) 846, 1083
BbvI GCAGC 5 cut(s) 154, 1393, 1396, 1399, 1572
BccI CCATC 7 cut(s) 2, 139, 252, 305, 749, 955, 1654
BceAI ACGGC 2 cut(s) 1091, 1355
BciVI GTATCC 1 cut(s) 1806
BclI TGATCA 3 cut(s) 691, 1261, 1831
BcnI CCSGG 2 cut(s) 708, 709
BcoDI GTCTC 1 cut(s) 1052
BfmI CTRYAG 1 cut(s) 622
BfrI CTTAAG 1 cut(s) 1552
BfuI GTATCC 1 cut(s) 1806
BglII AGATCT 2 cut(s) 383, 470
BisI GCNGC 8 cut(s) 168, 294, 827, 1407, 1410, 1413, 1561, 1585
BlpI GCTNAGC 2 cut(s) 21, 531
BlsI GCNGC 8 cut(s) 169, 295, 828, 1408, 1411, 1414, 1562, 1586
BmcAI AGTACT 5 cut(s) 337, 1180, 1318, 1348, 1718
Bme1390I CCNGG 2 cut(s) 708, 709
BmeT110I CYCGRG 3 cut(s) 311, 707, 1082
BmiI GGNNCC 1 cut(s) 491
BmrFI CCNGG 2 cut(s) 708, 709
BmrI ACTGGG 1 cut(s) 741
BmsI GCATC 4 cut(s) 53, 410, 658, 969
BmuI ACTGGG 1 cut(s) 741
BpiI GAAGAC 2 cut(s) 1185, 1851
BplI GAGNNNNNCTC 4 cut(s) 314, 346, 1625, 1657
Bpu1102I GCTNAGC 2 cut(s) 21, 531
BpuEI CTTGAG 4 cut(s) 34, 502, 911, 1327
BpuMI CCSGG 2 cut(s) 708, 709
Bsa29I ATCGAT 1 cut(s) 392
BsaAI YACGTR 1 cut(s) 1230
BsaBI GATNNNNATC 5 cut(s) 388, 672, 693, 759, 1266
BsaJI CCNNGG 3 cut(s) 707, 708, 1507
BsaXI ACNNNNNCTCC 4 cut(s) 473, 503, 1596, 1626
Bse118I RCCGGY 1 cut(s) 397
Bse1I ACTGG 1 cut(s) 747
Bse21I CCTNAGG 1 cut(s) 837
Bse3DI GCAATG 1 cut(s) 1365
Bse8I GATNNNNATC 5 cut(s) 388, 672, 693, 759, 1266
BseCI ATCGAT 1 cut(s) 392
BseDI CCNNGG 3 cut(s) 707, 708, 1507
BseGI GGATG 5 cut(s) 44, 297, 963, 1074, 1656
BseJI GATNNNNATC 5 cut(s) 388, 672, 693, 759, 1266
BseMI GCAATG 1 cut(s) 1365
BseMII CTCAG 6 cut(s) 12, 475, 486, 522, 646, 828
BseNI ACTGG 1 cut(s) 747
BseRI GAGGAG 8 cut(s) 103, 114, 329, 854, 1034, 1614, 1620, 1687
BseXI GCAGC 5 cut(s) 154, 1393, 1396, 1399, 1572
BseYI CCCAGC 1 cut(s) 16
BsgI GTGCAG 3 cut(s) 263, 573, 1579
BshFI GGCC 2 cut(s) 1248, 1522
BshVI ATCGAT 1 cut(s) 392
BsiHKAI GWGCWC 2 cut(s) 846, 1083
BsiHKCI CYCGRG 3 cut(s) 311, 707, 1082
BsiSI CCGG 3 cut(s) 398, 708, 1862
BslFI GGGAC 1 cut(s) 146
BsmAI GTCTC 1 cut(s) 1052
BsmBI CGTCTC 1 cut(s) 1052
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 2 cut(s) 1248, 1522
BsoBI CYCGRG 3 cut(s) 311, 707, 1082
Bsp1286I GDGCHC 2 cut(s) 846, 1083
Bsp1407I TGTACA 1 cut(s) 1800
Bsp1720I GCTNAGC 2 cut(s) 21, 531
BspANI GGCC 2 cut(s) 1248, 1522
BspCNI CTCAG 6 cut(s) 13, 474, 487, 523, 645, 829
BspDI ATCGAT 1 cut(s) 392
BspHI TCATGA 1 cut(s) 1492
BspLI GGNNCC 1 cut(s) 491
BspPI GGATC 1 cut(s) 473
BspTI CTTAAG 1 cut(s) 1552
BsrDI GCAATG 1 cut(s) 1365
BsrFI RCCGGY 1 cut(s) 397
BsrGI TGTACA 1 cut(s) 1800
BsrI ACTGG 1 cut(s) 747
BssAI RCCGGY 1 cut(s) 397
BssECI CCNNGG 3 cut(s) 707, 708, 1507
BssSI CACGAG 1 cut(s) 1669
Bst2BI CACGAG 1 cut(s) 1669
Bst4CI ACNGT 4 cut(s) 340, 626, 803, 1930
Bst6I CTCTTC 7 cut(s) 72, 90, 890, 969, 1004, 1571, 1742
BstAFI CTTAAG 1 cut(s) 1552
BstAUI TGTACA 1 cut(s) 1800
BstBAI YACGTR 1 cut(s) 1230
BstC8I GCNNGC 4 cut(s) 453, 1029, 1539, 1938
BstDEI CTNAG 9 cut(s) 21, 461, 495, 531, 632, 837, 891, 1790, 1896
BstF5I GGATG 5 cut(s) 44, 297, 963, 1074, 1656
BstMAI GTCTC 1 cut(s) 1052
BstMWI GCNNNNNNNGC 5 cut(s) 988, 1406, 1412, 1584, 1942
BstSCI CCNGG 2 cut(s) 706, 707
BstSFI CTRYAG 1 cut(s) 622
BstV1I GCAGC 5 cut(s) 154, 1393, 1396, 1399, 1572
BstV2I GAAGAC 2 cut(s) 1185, 1851
BstX2I RGATCY 2 cut(s) 383, 470
BstYI RGATCY 2 cut(s) 383, 470
Bsu15I ATCGAT 1 cut(s) 392
Bsu36I CCTNAGG 1 cut(s) 837
BsuI GTATCC 1 cut(s) 1806
BsuRI GGCC 2 cut(s) 1248, 1522
BsuTUI ATCGAT 1 cut(s) 392
BtsCI GGATG 5 cut(s) 44, 297, 963, 1074, 1656
BtsIMutI CAGTG 2 cut(s) 640, 754
Cac8I GCNNGC 4 cut(s) 453, 1029, 1539, 1938
CaiI CAGNNNCTG 1 cut(s) 271
CciI TCATGA 1 cut(s) 1492
Cfr10I RCCGGY 1 cut(s) 397
Cfr9I CCCGGG 1 cut(s) 707
ClaI ATCGAT 1 cut(s) 392
Csp6I GTAC 8 cut(s) 336, 1179, 1317, 1347, 1717, 1801, 1820, 1931
CspCI CAANNNNNGTGG 2 cut(s) 1561, 1596
CviAII CATG 5 cut(s) 478, 1044, 1381, 1493, 1901
CviQI GTAC 8 cut(s) 336, 1179, 1317, 1347, 1717, 1801, 1820, 1931
DdeI CTNAG 9 cut(s) 21, 461, 495, 531, 632, 837, 891, 1790, 1896
DrdI GACNNNNNNGTC 1 cut(s) 1607
DseDI GACNNNNNNGTC 1 cut(s) 1607
EaeI YGGCCR 2 cut(s) 1246, 1520
Eam1104I CTCTTC 7 cut(s) 72, 90, 890, 969, 1004, 1571, 1742
EarI CTCTTC 7 cut(s) 72, 90, 890, 969, 1004, 1571, 1742
EciI GGCGGA 1 cut(s) 280
Ecl136II GAGCTC 1 cut(s) 1081
Eco24I GRGCYC 1 cut(s) 1083
Eco53kI GAGCTC 1 cut(s) 1081
Eco81I CCTNAGG 1 cut(s) 837
Eco88I CYCGRG 3 cut(s) 311, 707, 1082
EcoICRI GAGCTC 1 cut(s) 1081
EcoRI GAATTC 1 cut(s) 1964
EcoT38I GRGCYC 1 cut(s) 1083
Esp3I CGTCTC 1 cut(s) 1052
FaeI CATG 5 cut(s) 481, 1047, 1384, 1496, 1904
FaiI YATR 9 cut(s) 41, 353, 479, 513, 1045, 1091, 1382, 1494, 1902
FalI AAGNNNNNCTT 4 cut(s) 1611, 1643, 1800, 1832
FaqI GGGAC 1 cut(s) 146
FatI CATG 5 cut(s) 477, 1043, 1380, 1492, 1900
FauI CCCGC 1 cut(s) 1861
FbaI TGATCA 3 cut(s) 691, 1261, 1831
Fnu4HI GCNGC 8 cut(s) 168, 294, 827, 1407, 1410, 1413, 1561, 1585
FokI GGATG 5 cut(s) 31, 284, 970, 1081, 1663
FriOI GRGCYC 1 cut(s) 1083
Fsp4HI GCNGC 8 cut(s) 168, 294, 827, 1407, 1410, 1413, 1561, 1585
GluI GCNGC 8 cut(s) 168, 294, 827, 1407, 1410, 1413, 1561, 1585
GsaI CCCAGC 1 cut(s) 20
HaeIII GGCC 2 cut(s) 1248, 1522
HapII CCGG 3 cut(s) 398, 708, 1862
Hin1II CATG 5 cut(s) 481, 1047, 1384, 1496, 1904
HincII GTYRAC 1 cut(s) 1741
HindII GTYRAC 1 cut(s) 1741
HindIII AAGCTT 2 cut(s) 989, 1025
HpaI GTTAAC 1 cut(s) 1741
HpaII CCGG 3 cut(s) 398, 708, 1862
HphI GGTGA 8 cut(s) 65, 83, 604, 677, 1127, 1892, 1916, 1922
Hpy166II GTNNAC 4 cut(s) 501, 952, 1155, 1741
Hpy188I TCNGA 9 cut(s) 258, 409, 470, 1200, 1450, 1511, 1545, 1831, 1963
Hpy8I GTNNAC 4 cut(s) 501, 952, 1155, 1741
Hpy99I CGWCG 2 cut(s) 1165, 1427
HpyAV CCTTC 5 cut(s) 127, 163, 213, 1836, 1901
HpyCH4III ACNGT 4 cut(s) 340, 626, 803, 1930
HpyCH4IV ACGT 1 cut(s) 1229
HpyF10VI GCNNNNNNNGC 5 cut(s) 988, 1406, 1412, 1584, 1942
HpyF3I CTNAG 9 cut(s) 21, 461, 495, 531, 632, 837, 891, 1790, 1896
HpySE526I ACGT 1 cut(s) 1229
Hsp92II CATG 5 cut(s) 481, 1047, 1384, 1496, 1904
Ksp22I TGATCA 3 cut(s) 691, 1261, 1831
KspAI GTTAAC 1 cut(s) 1741
LmnI GCTCC 4 cut(s) 709, 841, 1078, 1627
Lsp1109I GCAGC 5 cut(s) 154, 1393, 1396, 1399, 1572
LweI GCATC 4 cut(s) 53, 410, 658, 969
MaeII ACGT 1 cut(s) 1229
MaeIII GTNAC 4 cut(s) 635, 1232, 1664, 1752
MfeI CAATTG 1 cut(s) 789
MflI RGATCY 2 cut(s) 383, 470
MhlI GDGCHC 2 cut(s) 846, 1083
MluCI AATT 9 cut(s) 35, 234, 361, 446, 789, 914, 1139, 1171, 1964
MlyI GAGTC 5 cut(s) 21, 764, 1354, 1617, 1754
MmeI TCCRAC 1 cut(s) 1400
MroXI GAANNNNTTC 1 cut(s) 1151
MseI TTAA 6 cut(s) 147, 606, 1307, 1553, 1710, 1740
MspA1I CMGCKG 2 cut(s) 20, 829
MspCI CTTAAG 1 cut(s) 1552
MspI CCGG 3 cut(s) 398, 708, 1862
MspR9I CCNGG 2 cut(s) 708, 709
MunI CAATTG 1 cut(s) 789
MwoI GCNNNNNNNGC 5 cut(s) 988, 1406, 1412, 1584, 1942
NciI CCSGG 2 cut(s) 708, 709
NlaIII CATG 5 cut(s) 481, 1047, 1384, 1496, 1904
NlaIV GGNNCC 1 cut(s) 491
NmeAIII GCCGAG 2 cut(s) 946, 1548
NmuCI GTSAC 3 cut(s) 635, 1232, 1752
PaeR7I CTCGAG 2 cut(s) 311, 1082
PagI TCATGA 1 cut(s) 1492
PcsI WCGNNNNNNNCGW 2 cut(s) 1196, 1608
PdmI GAANNNNTTC 1 cut(s) 1151
PfeI GAWTC 6 cut(s) 428, 523, 1201, 1638, 1889, 1958
PkrI GCNGC 8 cut(s) 169, 295, 828, 1408, 1411, 1414, 1562, 1586
PleI GAGTC 5 cut(s) 20, 764, 1354, 1616, 1754
PpsI GAGTC 5 cut(s) 20, 764, 1354, 1616, 1754
Ppu21I YACGTR 1 cut(s) 1230
PshBI ATTAAT 1 cut(s) 147
Psp124BI GAGCTC 1 cut(s) 1083
PspFI CCCAGC 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 491
PstNI CAGNNNCTG 1 cut(s) 271
PsuI RGATCY 2 cut(s) 383, 470
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 8 cut(s) 337, 1180, 1318, 1348, 1718, 1802, 1821, 1932
RsaNI GTAC 8 cut(s) 336, 1179, 1317, 1347, 1717, 1801, 1820, 1931
SacI GAGCTC 1 cut(s) 1083
SaqAI TTAA 6 cut(s) 147, 606, 1307, 1553, 1710, 1740
SatI GCNGC 8 cut(s) 168, 294, 827, 1407, 1410, 1413, 1561, 1585
ScaI AGTACT 5 cut(s) 337, 1180, 1318, 1348, 1718
SchI GAGTC 5 cut(s) 21, 764, 1354, 1617, 1754
ScrFI CCNGG 2 cut(s) 708, 709
SduI GDGCHC 2 cut(s) 846, 1083
SfaNI GCATC 4 cut(s) 53, 410, 658, 969
SfcI CTRYAG 1 cut(s) 622
Sfr274I CTCGAG 2 cut(s) 311, 1082
SlaI CTCGAG 2 cut(s) 311, 1082
SmaI CCCGGG 1 cut(s) 709
SmlI CTYRAG 7 cut(s) 49, 311, 517, 926, 1082, 1342, 1552
SmoI CTYRAG 7 cut(s) 49, 311, 517, 926, 1082, 1342, 1552
Sse9I AATT 9 cut(s) 35, 234, 361, 446, 789, 914, 1139, 1171, 1964
SstI GAGCTC 1 cut(s) 1083
StyD4I CCNGG 2 cut(s) 706, 707
TaaI ACNGT 4 cut(s) 340, 626, 803, 1930
TaiI ACGT 1 cut(s) 1232
TaqI TCGA 6 cut(s) 312, 372, 392, 642, 1083, 1120
TasI AATT 9 cut(s) 35, 234, 361, 446, 789, 914, 1139, 1171, 1964
TatI WGTACW 6 cut(s) 335, 1178, 1316, 1346, 1716, 1800
TauI GCSGC 3 cut(s) 296, 829, 1587
TfiI GAWTC 6 cut(s) 428, 523, 1201, 1638, 1889, 1958
Tru1I TTAA 6 cut(s) 147, 606, 1307, 1553, 1710, 1740
Tru9I TTAA 6 cut(s) 147, 606, 1307, 1553, 1710, 1740
TscAI CASTG 2 cut(s) 640, 754
TseFI GTSAC 3 cut(s) 635, 1232, 1752
TseI GCWGC 5 cut(s) 167, 1406, 1409, 1412, 1560
Tsp45I GTSAC 3 cut(s) 635, 1232, 1752
TspGWI ACGGA 2 cut(s) 1076, 1617
TspMI CCCGGG 1 cut(s) 707
TspRI CASTG 2 cut(s) 640, 754
Vha464I CTTAAG 1 cut(s) 1552
VspI ATTAAT 1 cut(s) 147
XapI RAATTY 4 cut(s) 234, 914, 1139, 1964
XbaI TCTAGA 1 cut(s) 1394
XhoI CTCGAG 2 cut(s) 311, 1082
XmaI CCCGGG 1 cut(s) 707
XmnI GAANNNNTTC 1 cut(s) 1151
ZrmI AGTACT 5 cut(s) 337, 1180, 1318, 1348, 1718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.