Trihelix transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G28300 |
| fragaria_vesca | FvH4_6g03310 FvH4_6g03310 FvH4_6g03310 |
| malus_domestica | MD04G1221900.v1.1 MD12G1238000.v1.1 |
| prunus_persica | Prupe.6G341000_v2.0.a1 |
| pyrus_communis | pycom04g19640 pycom12g21880 |
| rosa_chinensis | RchiOBHm_Chr3g0451801 |
| rosa_laevigata | RLG00000025648 |
| rosa_multiflora | Rmu_sc0006510.1_g000017 |
| rosa_roxburghii | Rroxscaffold_164G00436310 Rroxscaffold_6G00428980 |
| rosa_rugosa | Rorug02G0636300 Rorug02G0636400 |
| rosa_samantha | Rh3AG037900 Rh3BG039000 Rh3CG037500 Rh3DG038300 |
| rosa_wichuraiana | Rw3G002820 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1607 |
| AclWI | GGATC | 1 cut(s) | 473 |
| AcoI | YGGCCR | 2 cut(s) | 1246, 1520 |
| AcsI | RAATTY | 4 cut(s) | 234, 914, 1139, 1964 |
| AfaI | GTAC | 8 cut(s) | 337, 1180, 1318, 1348, 1718, 1802, 1821, 1932 |
| AflII | CTTAAG | 1 cut(s) | 1552 |
| AflIII | ACRYGT | 1 cut(s) | 1229 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 777, 809 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 473, 505 |
| Alw21I | GWGCWC | 2 cut(s) | 846, 1083 |
| Alw26I | GTCTC | 1 cut(s) | 1052 |
| AlwI | GGATC | 1 cut(s) | 473 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 271 |
| Ama87I | CYCGRG | 3 cut(s) | 311, 707, 1082 |
| AoxI | GGCC | 2 cut(s) | 1246, 1520 |
| ApeKI | GCWGC | 5 cut(s) | 167, 1406, 1409, 1412, 1560 |
| ApoI | RAATTY | 4 cut(s) | 234, 914, 1139, 1964 |
| AseI | ATTAAT | 1 cut(s) | 147 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1151 |
| AsuC2I | CCSGG | 2 cut(s) | 708, 709 |
| AsuHPI | GGTGA | 8 cut(s) | 65, 83, 604, 677, 1127, 1892, 1916, 1922 |
| AvaI | CYCGRG | 3 cut(s) | 311, 707, 1082 |
| AxyI | CCTNAGG | 1 cut(s) | 837 |
| BanII | GRGCYC | 1 cut(s) | 1083 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1171, 1203 |
| BauI | CACGAG | 1 cut(s) | 1669 |
| BbsI | GAAGAC | 2 cut(s) | 1185, 1851 |
| Bbv12I | GWGCWC | 2 cut(s) | 846, 1083 |
| BbvI | GCAGC | 5 cut(s) | 154, 1393, 1396, 1399, 1572 |
| BccI | CCATC | 7 cut(s) | 2, 139, 252, 305, 749, 955, 1654 |
| BceAI | ACGGC | 2 cut(s) | 1091, 1355 |
| BciVI | GTATCC | 1 cut(s) | 1806 |
| BclI | TGATCA | 3 cut(s) | 691, 1261, 1831 |
| BcnI | CCSGG | 2 cut(s) | 708, 709 |
| BcoDI | GTCTC | 1 cut(s) | 1052 |
| BfmI | CTRYAG | 1 cut(s) | 622 |
| BfrI | CTTAAG | 1 cut(s) | 1552 |
| BfuI | GTATCC | 1 cut(s) | 1806 |
| BglII | AGATCT | 2 cut(s) | 383, 470 |
| BisI | GCNGC | 8 cut(s) | 168, 294, 827, 1407, 1410, 1413, 1561, 1585 |
| BlpI | GCTNAGC | 2 cut(s) | 21, 531 |
| BlsI | GCNGC | 8 cut(s) | 169, 295, 828, 1408, 1411, 1414, 1562, 1586 |
| BmcAI | AGTACT | 5 cut(s) | 337, 1180, 1318, 1348, 1718 |
| Bme1390I | CCNGG | 2 cut(s) | 708, 709 |
| BmeT110I | CYCGRG | 3 cut(s) | 311, 707, 1082 |
| BmiI | GGNNCC | 1 cut(s) | 491 |
| BmrFI | CCNGG | 2 cut(s) | 708, 709 |
| BmrI | ACTGGG | 1 cut(s) | 741 |
| BmsI | GCATC | 4 cut(s) | 53, 410, 658, 969 |
| BmuI | ACTGGG | 1 cut(s) | 741 |
| BpiI | GAAGAC | 2 cut(s) | 1185, 1851 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 314, 346, 1625, 1657 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 21, 531 |
| BpuEI | CTTGAG | 4 cut(s) | 34, 502, 911, 1327 |
| BpuMI | CCSGG | 2 cut(s) | 708, 709 |
| Bsa29I | ATCGAT | 1 cut(s) | 392 |
| BsaAI | YACGTR | 1 cut(s) | 1230 |
| BsaBI | GATNNNNATC | 5 cut(s) | 388, 672, 693, 759, 1266 |
| BsaJI | CCNNGG | 3 cut(s) | 707, 708, 1507 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 473, 503, 1596, 1626 |
| Bse118I | RCCGGY | 1 cut(s) | 397 |
| Bse1I | ACTGG | 1 cut(s) | 747 |
| Bse21I | CCTNAGG | 1 cut(s) | 837 |
| Bse3DI | GCAATG | 1 cut(s) | 1365 |
| Bse8I | GATNNNNATC | 5 cut(s) | 388, 672, 693, 759, 1266 |
| BseCI | ATCGAT | 1 cut(s) | 392 |
| BseDI | CCNNGG | 3 cut(s) | 707, 708, 1507 |
| BseGI | GGATG | 5 cut(s) | 44, 297, 963, 1074, 1656 |
| BseJI | GATNNNNATC | 5 cut(s) | 388, 672, 693, 759, 1266 |
| BseMI | GCAATG | 1 cut(s) | 1365 |
| BseMII | CTCAG | 6 cut(s) | 12, 475, 486, 522, 646, 828 |
| BseNI | ACTGG | 1 cut(s) | 747 |
| BseRI | GAGGAG | 8 cut(s) | 103, 114, 329, 854, 1034, 1614, 1620, 1687 |
| BseXI | GCAGC | 5 cut(s) | 154, 1393, 1396, 1399, 1572 |
| BseYI | CCCAGC | 1 cut(s) | 16 |
| BsgI | GTGCAG | 3 cut(s) | 263, 573, 1579 |
| BshFI | GGCC | 2 cut(s) | 1248, 1522 |
| BshVI | ATCGAT | 1 cut(s) | 392 |
| BsiHKAI | GWGCWC | 2 cut(s) | 846, 1083 |
| BsiHKCI | CYCGRG | 3 cut(s) | 311, 707, 1082 |
| BsiSI | CCGG | 3 cut(s) | 398, 708, 1862 |
| BslFI | GGGAC | 1 cut(s) | 146 |
| BsmAI | GTCTC | 1 cut(s) | 1052 |
| BsmBI | CGTCTC | 1 cut(s) | 1052 |
| BsmFI | GGGAC | 1 cut(s) | 146 |
| BsnI | GGCC | 2 cut(s) | 1248, 1522 |
| BsoBI | CYCGRG | 3 cut(s) | 311, 707, 1082 |
| Bsp1286I | GDGCHC | 2 cut(s) | 846, 1083 |
| Bsp1407I | TGTACA | 1 cut(s) | 1800 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 21, 531 |
| BspANI | GGCC | 2 cut(s) | 1248, 1522 |
| BspCNI | CTCAG | 6 cut(s) | 13, 474, 487, 523, 645, 829 |
| BspDI | ATCGAT | 1 cut(s) | 392 |
| BspHI | TCATGA | 1 cut(s) | 1492 |
| BspLI | GGNNCC | 1 cut(s) | 491 |
| BspPI | GGATC | 1 cut(s) | 473 |
| BspTI | CTTAAG | 1 cut(s) | 1552 |
| BsrDI | GCAATG | 1 cut(s) | 1365 |
| BsrFI | RCCGGY | 1 cut(s) | 397 |
| BsrGI | TGTACA | 1 cut(s) | 1800 |
| BsrI | ACTGG | 1 cut(s) | 747 |
| BssAI | RCCGGY | 1 cut(s) | 397 |
| BssECI | CCNNGG | 3 cut(s) | 707, 708, 1507 |
| BssSI | CACGAG | 1 cut(s) | 1669 |
| Bst2BI | CACGAG | 1 cut(s) | 1669 |
| Bst4CI | ACNGT | 4 cut(s) | 340, 626, 803, 1930 |
| Bst6I | CTCTTC | 7 cut(s) | 72, 90, 890, 969, 1004, 1571, 1742 |
| BstAFI | CTTAAG | 1 cut(s) | 1552 |
| BstAUI | TGTACA | 1 cut(s) | 1800 |
| BstBAI | YACGTR | 1 cut(s) | 1230 |
| BstC8I | GCNNGC | 4 cut(s) | 453, 1029, 1539, 1938 |
| BstDEI | CTNAG | 9 cut(s) | 21, 461, 495, 531, 632, 837, 891, 1790, 1896 |
| BstF5I | GGATG | 5 cut(s) | 44, 297, 963, 1074, 1656 |
| BstMAI | GTCTC | 1 cut(s) | 1052 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 988, 1406, 1412, 1584, 1942 |
| BstSCI | CCNGG | 2 cut(s) | 706, 707 |
| BstSFI | CTRYAG | 1 cut(s) | 622 |
| BstV1I | GCAGC | 5 cut(s) | 154, 1393, 1396, 1399, 1572 |
| BstV2I | GAAGAC | 2 cut(s) | 1185, 1851 |
| BstX2I | RGATCY | 2 cut(s) | 383, 470 |
| BstYI | RGATCY | 2 cut(s) | 383, 470 |
| Bsu15I | ATCGAT | 1 cut(s) | 392 |
| Bsu36I | CCTNAGG | 1 cut(s) | 837 |
| BsuI | GTATCC | 1 cut(s) | 1806 |
| BsuRI | GGCC | 2 cut(s) | 1248, 1522 |
| BsuTUI | ATCGAT | 1 cut(s) | 392 |
| BtsCI | GGATG | 5 cut(s) | 44, 297, 963, 1074, 1656 |
| BtsIMutI | CAGTG | 2 cut(s) | 640, 754 |
| Cac8I | GCNNGC | 4 cut(s) | 453, 1029, 1539, 1938 |
| CaiI | CAGNNNCTG | 1 cut(s) | 271 |
| CciI | TCATGA | 1 cut(s) | 1492 |
| Cfr10I | RCCGGY | 1 cut(s) | 397 |
| Cfr9I | CCCGGG | 1 cut(s) | 707 |
| ClaI | ATCGAT | 1 cut(s) | 392 |
| Csp6I | GTAC | 8 cut(s) | 336, 1179, 1317, 1347, 1717, 1801, 1820, 1931 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1561, 1596 |
| CviAII | CATG | 5 cut(s) | 478, 1044, 1381, 1493, 1901 |
| CviQI | GTAC | 8 cut(s) | 336, 1179, 1317, 1347, 1717, 1801, 1820, 1931 |
| DdeI | CTNAG | 9 cut(s) | 21, 461, 495, 531, 632, 837, 891, 1790, 1896 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1607 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1607 |
| EaeI | YGGCCR | 2 cut(s) | 1246, 1520 |
| Eam1104I | CTCTTC | 7 cut(s) | 72, 90, 890, 969, 1004, 1571, 1742 |
| EarI | CTCTTC | 7 cut(s) | 72, 90, 890, 969, 1004, 1571, 1742 |
| EciI | GGCGGA | 1 cut(s) | 280 |
| Ecl136II | GAGCTC | 1 cut(s) | 1081 |
| Eco24I | GRGCYC | 1 cut(s) | 1083 |
| Eco53kI | GAGCTC | 1 cut(s) | 1081 |
| Eco81I | CCTNAGG | 1 cut(s) | 837 |
| Eco88I | CYCGRG | 3 cut(s) | 311, 707, 1082 |
| EcoICRI | GAGCTC | 1 cut(s) | 1081 |
| EcoRI | GAATTC | 1 cut(s) | 1964 |
| EcoT38I | GRGCYC | 1 cut(s) | 1083 |
| Esp3I | CGTCTC | 1 cut(s) | 1052 |
| FaeI | CATG | 5 cut(s) | 481, 1047, 1384, 1496, 1904 |
| FaiI | YATR | 9 cut(s) | 41, 353, 479, 513, 1045, 1091, 1382, 1494, 1902 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1611, 1643, 1800, 1832 |
| FaqI | GGGAC | 1 cut(s) | 146 |
| FatI | CATG | 5 cut(s) | 477, 1043, 1380, 1492, 1900 |
| FauI | CCCGC | 1 cut(s) | 1861 |
| FbaI | TGATCA | 3 cut(s) | 691, 1261, 1831 |
| Fnu4HI | GCNGC | 8 cut(s) | 168, 294, 827, 1407, 1410, 1413, 1561, 1585 |
| FokI | GGATG | 5 cut(s) | 31, 284, 970, 1081, 1663 |
| FriOI | GRGCYC | 1 cut(s) | 1083 |
| Fsp4HI | GCNGC | 8 cut(s) | 168, 294, 827, 1407, 1410, 1413, 1561, 1585 |
| GluI | GCNGC | 8 cut(s) | 168, 294, 827, 1407, 1410, 1413, 1561, 1585 |
| GsaI | CCCAGC | 1 cut(s) | 20 |
| HaeIII | GGCC | 2 cut(s) | 1248, 1522 |
| HapII | CCGG | 3 cut(s) | 398, 708, 1862 |
| Hin1II | CATG | 5 cut(s) | 481, 1047, 1384, 1496, 1904 |
| HincII | GTYRAC | 1 cut(s) | 1741 |
| HindII | GTYRAC | 1 cut(s) | 1741 |
| HindIII | AAGCTT | 2 cut(s) | 989, 1025 |
| HpaI | GTTAAC | 1 cut(s) | 1741 |
| HpaII | CCGG | 3 cut(s) | 398, 708, 1862 |
| HphI | GGTGA | 8 cut(s) | 65, 83, 604, 677, 1127, 1892, 1916, 1922 |
| Hpy166II | GTNNAC | 4 cut(s) | 501, 952, 1155, 1741 |
| Hpy188I | TCNGA | 9 cut(s) | 258, 409, 470, 1200, 1450, 1511, 1545, 1831, 1963 |
| Hpy8I | GTNNAC | 4 cut(s) | 501, 952, 1155, 1741 |
| Hpy99I | CGWCG | 2 cut(s) | 1165, 1427 |
| HpyAV | CCTTC | 5 cut(s) | 127, 163, 213, 1836, 1901 |
| HpyCH4III | ACNGT | 4 cut(s) | 340, 626, 803, 1930 |
| HpyCH4IV | ACGT | 1 cut(s) | 1229 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 988, 1406, 1412, 1584, 1942 |
| HpyF3I | CTNAG | 9 cut(s) | 21, 461, 495, 531, 632, 837, 891, 1790, 1896 |
| HpySE526I | ACGT | 1 cut(s) | 1229 |
| Hsp92II | CATG | 5 cut(s) | 481, 1047, 1384, 1496, 1904 |
| Ksp22I | TGATCA | 3 cut(s) | 691, 1261, 1831 |
| KspAI | GTTAAC | 1 cut(s) | 1741 |
| LmnI | GCTCC | 4 cut(s) | 709, 841, 1078, 1627 |
| Lsp1109I | GCAGC | 5 cut(s) | 154, 1393, 1396, 1399, 1572 |
| LweI | GCATC | 4 cut(s) | 53, 410, 658, 969 |
| MaeII | ACGT | 1 cut(s) | 1229 |
| MaeIII | GTNAC | 4 cut(s) | 635, 1232, 1664, 1752 |
| MfeI | CAATTG | 1 cut(s) | 789 |
| MflI | RGATCY | 2 cut(s) | 383, 470 |
| MhlI | GDGCHC | 2 cut(s) | 846, 1083 |
| MluCI | AATT | 9 cut(s) | 35, 234, 361, 446, 789, 914, 1139, 1171, 1964 |
| MlyI | GAGTC | 5 cut(s) | 21, 764, 1354, 1617, 1754 |
| MmeI | TCCRAC | 1 cut(s) | 1400 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1151 |
| MseI | TTAA | 6 cut(s) | 147, 606, 1307, 1553, 1710, 1740 |
| MspA1I | CMGCKG | 2 cut(s) | 20, 829 |
| MspCI | CTTAAG | 1 cut(s) | 1552 |
| MspI | CCGG | 3 cut(s) | 398, 708, 1862 |
| MspR9I | CCNGG | 2 cut(s) | 708, 709 |
| MunI | CAATTG | 1 cut(s) | 789 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 988, 1406, 1412, 1584, 1942 |
| NciI | CCSGG | 2 cut(s) | 708, 709 |
| NlaIII | CATG | 5 cut(s) | 481, 1047, 1384, 1496, 1904 |
| NlaIV | GGNNCC | 1 cut(s) | 491 |
| NmeAIII | GCCGAG | 2 cut(s) | 946, 1548 |
| NmuCI | GTSAC | 3 cut(s) | 635, 1232, 1752 |
| PaeR7I | CTCGAG | 2 cut(s) | 311, 1082 |
| PagI | TCATGA | 1 cut(s) | 1492 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1196, 1608 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1151 |
| PfeI | GAWTC | 6 cut(s) | 428, 523, 1201, 1638, 1889, 1958 |
| PkrI | GCNGC | 8 cut(s) | 169, 295, 828, 1408, 1411, 1414, 1562, 1586 |
| PleI | GAGTC | 5 cut(s) | 20, 764, 1354, 1616, 1754 |
| PpsI | GAGTC | 5 cut(s) | 20, 764, 1354, 1616, 1754 |
| Ppu21I | YACGTR | 1 cut(s) | 1230 |
| PshBI | ATTAAT | 1 cut(s) | 147 |
| Psp124BI | GAGCTC | 1 cut(s) | 1083 |
| PspFI | CCCAGC | 1 cut(s) | 16 |
| PspN4I | GGNNCC | 1 cut(s) | 491 |
| PstNI | CAGNNNCTG | 1 cut(s) | 271 |
| PsuI | RGATCY | 2 cut(s) | 383, 470 |
| PvuII | CAGCTG | 1 cut(s) | 20 |
| RsaI | GTAC | 8 cut(s) | 337, 1180, 1318, 1348, 1718, 1802, 1821, 1932 |
| RsaNI | GTAC | 8 cut(s) | 336, 1179, 1317, 1347, 1717, 1801, 1820, 1931 |
| SacI | GAGCTC | 1 cut(s) | 1083 |
| SaqAI | TTAA | 6 cut(s) | 147, 606, 1307, 1553, 1710, 1740 |
| SatI | GCNGC | 8 cut(s) | 168, 294, 827, 1407, 1410, 1413, 1561, 1585 |
| ScaI | AGTACT | 5 cut(s) | 337, 1180, 1318, 1348, 1718 |
| SchI | GAGTC | 5 cut(s) | 21, 764, 1354, 1617, 1754 |
| ScrFI | CCNGG | 2 cut(s) | 708, 709 |
| SduI | GDGCHC | 2 cut(s) | 846, 1083 |
| SfaNI | GCATC | 4 cut(s) | 53, 410, 658, 969 |
| SfcI | CTRYAG | 1 cut(s) | 622 |
| Sfr274I | CTCGAG | 2 cut(s) | 311, 1082 |
| SlaI | CTCGAG | 2 cut(s) | 311, 1082 |
| SmaI | CCCGGG | 1 cut(s) | 709 |
| SmlI | CTYRAG | 7 cut(s) | 49, 311, 517, 926, 1082, 1342, 1552 |
| SmoI | CTYRAG | 7 cut(s) | 49, 311, 517, 926, 1082, 1342, 1552 |
| Sse9I | AATT | 9 cut(s) | 35, 234, 361, 446, 789, 914, 1139, 1171, 1964 |
| SstI | GAGCTC | 1 cut(s) | 1083 |
| StyD4I | CCNGG | 2 cut(s) | 706, 707 |
| TaaI | ACNGT | 4 cut(s) | 340, 626, 803, 1930 |
| TaiI | ACGT | 1 cut(s) | 1232 |
| TaqI | TCGA | 6 cut(s) | 312, 372, 392, 642, 1083, 1120 |
| TasI | AATT | 9 cut(s) | 35, 234, 361, 446, 789, 914, 1139, 1171, 1964 |
| TatI | WGTACW | 6 cut(s) | 335, 1178, 1316, 1346, 1716, 1800 |
| TauI | GCSGC | 3 cut(s) | 296, 829, 1587 |
| TfiI | GAWTC | 6 cut(s) | 428, 523, 1201, 1638, 1889, 1958 |
| Tru1I | TTAA | 6 cut(s) | 147, 606, 1307, 1553, 1710, 1740 |
| Tru9I | TTAA | 6 cut(s) | 147, 606, 1307, 1553, 1710, 1740 |
| TscAI | CASTG | 2 cut(s) | 640, 754 |
| TseFI | GTSAC | 3 cut(s) | 635, 1232, 1752 |
| TseI | GCWGC | 5 cut(s) | 167, 1406, 1409, 1412, 1560 |
| Tsp45I | GTSAC | 3 cut(s) | 635, 1232, 1752 |
| TspGWI | ACGGA | 2 cut(s) | 1076, 1617 |
| TspMI | CCCGGG | 1 cut(s) | 707 |
| TspRI | CASTG | 2 cut(s) | 640, 754 |
| Vha464I | CTTAAG | 1 cut(s) | 1552 |
| VspI | ATTAAT | 1 cut(s) | 147 |
| XapI | RAATTY | 4 cut(s) | 234, 914, 1139, 1964 |
| XbaI | TCTAGA | 1 cut(s) | 1394 |
| XhoI | CTCGAG | 2 cut(s) | 311, 1082 |
| XmaI | CCCGGG | 1 cut(s) | 707 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1151 |
| ZrmI | AGTACT | 5 cut(s) | 337, 1180, 1318, 1348, 1718 |