Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0010439

Physical Location & Seq

Genomic Coordinates Reverse (-)

2542336 .. 2544502

Gene Structure 2167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG037900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1809 bp

ATGTTCGATGGAGTCCCAGCTGAGCAATTGCACCAATTCATAGCAGCCTCAAGAACTTCACTCCCTCTCCCTCTTCCCAATATTCCTCTCTCTTCCTTCCCTAATCTCCAACCCTTCGATCATCATCATCATCATCATCATAGCTACAACATCATCAACCCTCCTCCCCCAACACCTCAAGAACTTGTGCAGCTTCAGCCACCACCTCACAATCAGCTTCTGCTTCCGTCCGTAGTACTTCACCGCCGCGCAAATGATCAAGAGAAGCAAGAAAACAGCACTACCTTGGTCTTGCCCTCATCGAATTTGGAGATCGAACGAGAACGAACAGCATCGATGCCACCTGAATTGCCTAGCGATCCCTGGAGTAACGATGAGCTGCTTGCACTGCTCCGGATCAGATCTACCATGGAGAATTGGTTCCCTGAGTTCACTTGGGAACATGTCTCAAGAAAGCTTGCAGAGGTTGGCTTTAAAAGGAGTGCAGAGAAGTGCAAGGAGAAGTTTGAAGAGGAAAGCAGGTACTTCAACAACATCAACTTCAACAAGAACTTCAGGTTTCTTAGTGAGCTTGAGCAGCTCTATCAACCACCAGTTGAGCCACCTCAAAACGTAGCTGAAGATCAACCAGAAAAGAATACCGAAAAAGTAGTAGAAGTTGAAAAGCCAAGTGAAGAACTAGGAAACCAAGATAAAGGCCAAACAGCTTTGGATCCTCAAGAGTCACCAAGCAATGATCAAACAGTTAGTGAGACACAGGTAGAGATTGTTAGAGCAAAGAGCAACAACAAGAAGAGGAAGAGGCAGAGGAGATTTGAAATGCTGAAAGGTTTCTGTGAAGACATAGTGAACAAGTTGATGGCTCAGCAAGAAGAGACTCACATTAAGCTACTTGAAGACATGGTGAGGAGAGATGAAGAGAAGCTTGCAAAGGAAGAAGCTTGGAAGAAGCAAGAGATGGATAGGATGAACAAGGAGCTTGAAACCATGGCACATGAACAAGCTGTTGCAGGTGATAGACAAGCTACAATTATTCAGTTCTTGAAGAAATTCACATCATCGGCTAGTACTAGTAGTAGTACTAACCCTAGTAATGGCCAAAAGGAAAATGATCAAGAACCAATTACATCATCCACAATGGTCCCATCTGCAAGCAATGTTCACAAGTCTACTACTACTACTTCTTTCCACACCCAAAATAATCCAAGCACACCCACTTCACTGACCGAAGCCATTGCACCCCAAAGCCCTAGTTCAAGCACTCTAAGCATCAATCCAAAACTGCCCATTTCATCTCCGCCTCCTGAAAACCCTAGCTCCGATCATCTCAAAACCCAAAACCCTAGCTCGGACGACAAAGCGCAAGACCTCGGAAAGAGGTGGCCGAGGGACGAAGTCTTGGCTCTGATCAACCTCCGGTGCAGTCTCTTCAACAATGGCGATCAACAAGACAAGGATAAAGATGGAGGAGCCGTCAAGGCTCCACTGTGGGAGAGAATCTCACAAGGGATGTCGGAGTTGGGTTACAAGAGAAACGCCAAGAGGTGTAAAGAGAAATGGGAGAATATCAATAAGTACTTTAGGAAAACAAAGGATGTGAACAAGAAGAGGTCGCTTGACTCGAGGACTTGCCCTTATTTTCATCAACTAAGCACTTTGTACAACCAAGGCATACTCGTACCGCCTTCCGATCACCAAGCGGCGGCGCCGGAAAACCGCTCACCGGAGAACCAATCATCTCTAGCTGAAGGTGAGAAAAACAATATGGTACTGCAAGCTGTACCGGCAGCTTTTGATTTTGAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001158 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0035326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

602

Amino Acids

68.57

Weight (kDa)

5.91

Isoelectric Point (pI)

68.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	120 - 182	3.4e-11	Myb/SANT-like DNA-binding domain
Myb_DNA-bind_4	PF13837	459 - 552	8.5e-21	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28300
fragaria_vesca	FvH4_6g03310 FvH4_6g03310 FvH4_6g03310
malus_domestica	MD04G1221900.v1.1 MD12G1238000.v1.1
prunus_persica	Prupe.6G341000_v2.0.a1
pyrus_communis	pycom04g19640 pycom12g21880
rosa_chinensis	RchiOBHm_Chr3g0451801
rosa_laevigata	RLG00000025648
rosa_multiflora	Rmu_sc0006510.1_g000017
rosa_roxburghii	Rroxscaffold_164G00436310 Rroxscaffold_6G00428980
rosa_rugosa	Rorug02G0636300 Rorug02G0636400
rosa_samantha	Rh3AG037900 Rh3BG039000 Rh3CG037500 Rh3DG038300
rosa_wichuraiana	Rw3G002820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1001
Acc36I	ACCTGC	2 cut(s)	510, 1001
AccB1I	GGYRCC	1 cut(s)	1705
AccBSI	CCGCTC	1 cut(s)	1719
AccI	GTMKAC	1 cut(s)	1169
AccII	CGCG	1 cut(s)	249
AccIII	TCCGGA	1 cut(s)	393
AciI	CCGC	7 cut(s)	244, 247, 1298, 1682, 1700, 1703, 1717
AclWI	GGATC	4 cut(s)	353, 404, 707, 720
AcoI	YGGCCR	2 cut(s)	1096, 1382
AcsI	RAATTY	3 cut(s)	304, 1049, 1802
AcuI	CTGAAG	4 cut(s)	179, 538, 639, 1767
AcyI	GRCGYC	1 cut(s)	1706
AfaI	GTAC	9 cut(s)	237, 524, 1069, 1081, 1577, 1661, 1680, 1770, 1782
AfiI	CCNNNNNNNGG	4 cut(s)	1094, 1348, 1702, 1723
AflIII	ACRYGT	1 cut(s)	442
AhlI	ACTAGT	1 cut(s)	1070
AjnI	CCWGG	1 cut(s)	362
AloI	GAACNNNNNNTCC	2 cut(s)	404, 436
Alw26I	GTCTC	4 cut(s)	451, 746, 869, 1430
AlwI	GGATC	4 cut(s)	353, 404, 707, 720
AlwNI	CAGNNNCTG	1 cut(s)	220
Ama87I	CYCGRG	1 cut(s)	1621
Aor13HI	TCCGGA	1 cut(s)	393
AoxI	GGCC	3 cut(s)	697, 1096, 1382
ApeKI	GCWGC	5 cut(s)	44, 190, 379, 577, 1787
ApoI	RAATTY	3 cut(s)	304, 1049, 1802
Asp700I	GAANNNNTTC	3 cut(s)	419, 830, 1049
AspLEI	GCGC	3 cut(s)	251, 1363, 1708
AspS9I	GGNCC	1 cut(s)	1141
AsuHPI	GGTGA	7 cut(s)	233, 717, 916, 1025, 1685, 1713, 1763
AvaI	CYCGRG	1 cut(s)	1621
AvaII	GGWCC	1 cut(s)	1141
BalI	TGGCCA	1 cut(s)	1098
BamHI	GGATCC	1 cut(s)	712
BanI	GGYRCC	1 cut(s)	1705
BbsI	GAAGAC	2 cut(s)	846, 903
BbvI	GCAGC	5 cut(s)	56, 202, 366, 589, 1799
BccI	CCATC	5 cut(s)	2, 853, 952, 1153, 1457
BceAI	ACGGC	1 cut(s)	1457
BcgI	CGANNNNNNTGC	2 cut(s)	1217, 1251
BciT130I	CCWGG	1 cut(s)	364
BclI	TGATCA	4 cut(s)	256, 736, 1111, 1407
BcoDI	GTCTC	4 cut(s)	451, 746, 869, 1430
BcuI	ACTAGT	1 cut(s)	1070
BfaI	CTAG	9 cut(s)	354, 680, 1065, 1071, 1089, 1251, 1314, 1344, 1742
BfoI	RGCGCY	1 cut(s)	1709
BfuAI	ACCTGC	2 cut(s)	510, 1001
BglI	GCCNNNNNGGC	1 cut(s)	1478
BglII	AGATCT	1 cut(s)	401
BisI	GCNGC	8 cut(s)	45, 191, 247, 380, 578, 1701, 1704, 1788
BlpI	GCTNAGC	2 cut(s)	21, 864
BlsI	GCNGC	8 cut(s)	46, 192, 248, 381, 579, 1702, 1705, 1789
BmcAI	AGTACT	4 cut(s)	237, 1069, 1081, 1577
Bme1390I	CCNGG	1 cut(s)	364
Bme18I	GGWCC	1 cut(s)	1141
BmeT110I	CYCGRG	1 cut(s)	1621
BmgT120I	GGNCC	1 cut(s)	1141
BmiI	GGNNCC	6 cut(s)	422, 714, 1143, 1471, 1482, 1707
BmrFI	CCNGG	1 cut(s)	364
BmsI	GCATC	3 cut(s)	327, 341, 1278
BpiI	GAAGAC	2 cut(s)	846, 903
BplI	GAGNNNNNCTC	2 cut(s)	1484, 1516
BpmI	CTGGAG	1 cut(s)	385
Bpu1102I	GCTNAGC	2 cut(s)	21, 864
BpuEI	CTTGAG	5 cut(s)	34, 162, 433, 593, 702
Bsa29I	ATCGAT	1 cut(s)	335
BsaBI	GATNNNNATC	1 cut(s)	123
BsaHI	GRCGYC	1 cut(s)	1706
BsaJI	CCNNGG	7 cut(s)	285, 362, 408, 987, 1369, 1385, 1666
BsaWI	WCCGGW	3 cut(s)	393, 1416, 1723
BsaXI	ACNNNNNCTCC	8 cut(s)	51, 81, 404, 434, 1301, 1331, 1458, 1488
Bsc4I	CCNNNNNNNGG	4 cut(s)	1094, 1348, 1702, 1723
Bse118I	RCCGGY	1 cut(s)	1783
Bse1I	ACTGG	1 cut(s)	593
Bse3DI	GCAATG	3 cut(s)	739, 1162, 1233
Bse8I	GATNNNNATC	1 cut(s)	123
BseAI	TCCGGA	1 cut(s)	393
BseBI	CCWGG	1 cut(s)	364
BseCI	ATCGAT	1 cut(s)	335
BseDI	CCNNGG	7 cut(s)	285, 362, 408, 987, 1369, 1385, 1666
BseGI	GGATG	4 cut(s)	972, 1130, 1515, 1600
BseJI	GATNNNNATC	1 cut(s)	123
BseLI	CCNNNNNNNGG	4 cut(s)	1094, 1348, 1702, 1723
BseMI	GCAATG	3 cut(s)	739, 1162, 1233
BseMII	CTCAG	3 cut(s)	12, 417, 878
BseNI	ACTGG	1 cut(s)	593
BseRI	GAGGAG	4 cut(s)	153, 823, 922, 1482
BseXI	GCAGC	5 cut(s)	56, 202, 366, 589, 1799
BseYI	CCCAGC	1 cut(s)	16
BsgI	GTGCAG	3 cut(s)	209, 504, 1441
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	3 cut(s)	699, 1098, 1384
BshNI	GGYRCC	1 cut(s)	1705
BshVI	ATCGAT	1 cut(s)	335
BsiHKCI	CYCGRG	1 cut(s)	1621
BsiSI	CCGG	5 cut(s)	394, 1417, 1709, 1724, 1784
BslFI	GGGAC	2 cut(s)	1127, 1403
BslI	CCNNNNNNNGG	4 cut(s)	1094, 1348, 1702, 1723
BsmAI	GTCTC	4 cut(s)	451, 746, 869, 1430
BsmFI	GGGAC	2 cut(s)	1127, 1403
BsnI	GGCC	3 cut(s)	699, 1098, 1384
BsoBI	CYCGRG	1 cut(s)	1621
Bsp13I	TCCGGA	1 cut(s)	393
Bsp1407I	TGTACA	1 cut(s)	1659
Bsp1720I	GCTNAGC	2 cut(s)	21, 864
Bsp19I	CCATGG	2 cut(s)	408, 987
BspACI	CCGC	7 cut(s)	244, 247, 1298, 1682, 1700, 1703, 1717
BspANI	GGCC	3 cut(s)	699, 1098, 1384
BspCNI	CTCAG	3 cut(s)	13, 418, 877
BspDI	ATCGAT	1 cut(s)	335
BspEI	TCCGGA	1 cut(s)	393
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	6 cut(s)	422, 714, 1143, 1471, 1482, 1707
BspMI	ACCTGC	2 cut(s)	510, 1001
BspPI	GGATC	4 cut(s)	353, 404, 707, 720
BspT107I	GGYRCC	1 cut(s)	1705
BsrBI	CCGCTC	1 cut(s)	1719
BsrDI	GCAATG	3 cut(s)	739, 1162, 1233
BsrFI	RCCGGY	1 cut(s)	1783
BsrGI	TGTACA	1 cut(s)	1659
BsrI	ACTGG	1 cut(s)	593
BssAI	RCCGGY	1 cut(s)	1783
BssECI	CCNNGG	7 cut(s)	285, 362, 408, 987, 1369, 1385, 1666
BssNI	GRCGYC	1 cut(s)	1706
BssT1I	CCWWGG	4 cut(s)	285, 408, 987, 1666
Bst2UI	CCWGG	1 cut(s)	364
Bst4CI	ACNGT	2 cut(s)	745, 1488
Bst6I	CTCTTC	9 cut(s)	78, 97, 504, 788, 794, 867, 912, 1433, 1601
BstACI	GRCGYC	1 cut(s)	1706
BstAUI	TGTACA	1 cut(s)	1659
BstC8I	GCNNGC	5 cut(s)	384, 459, 927, 1153, 1776
BstDEI	CTNAG	6 cut(s)	21, 426, 563, 864, 1265, 1649
BstDSI	CCRYGG	2 cut(s)	408, 987
BstF5I	GGATG	4 cut(s)	972, 1130, 1515, 1600
BstFNI	CGCG	1 cut(s)	249
BstH2I	RGCGCY	1 cut(s)	1709
BstHHI	GCGC	3 cut(s)	251, 1363, 1708
BstMAI	GTCTC	4 cut(s)	451, 746, 869, 1430
BstMWI	GCNNNNNNNGC	6 cut(s)	196, 388, 577, 1266, 1478, 1784
BstNI	CCWGG	1 cut(s)	364
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	362
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	5 cut(s)	56, 202, 366, 589, 1799
BstV2I	GAAGAC	2 cut(s)	846, 903
BstX2I	RGATCY	2 cut(s)	401, 712
BstYI	RGATCY	2 cut(s)	401, 712
Bsu15I	ATCGAT	1 cut(s)	335
BsuRI	GGCC	3 cut(s)	699, 1098, 1384
BsuTUI	ATCGAT	1 cut(s)	335
BtgI	CCRYGG	2 cut(s)	408, 987
BtsCI	GGATG	4 cut(s)	972, 1130, 1515, 1600
BtsI	GCAGTG	1 cut(s)	386
BtsIMutI	CAGTG	3 cut(s)	386, 1220, 1484
BveI	ACCTGC	2 cut(s)	510, 1001
Cac8I	GCNNGC	5 cut(s)	384, 459, 927, 1153, 1776
CaiI	CAGNNNCTG	1 cut(s)	220
CfoI	GCGC	3 cut(s)	251, 1363, 1708
Cfr10I	RCCGGY	1 cut(s)	1783
Cfr13I	GGNCC	1 cut(s)	1141
ClaI	ATCGAT	1 cut(s)	335
Csp6I	GTAC	9 cut(s)	236, 523, 1068, 1080, 1576, 1660, 1679, 1769, 1781
CspCI	CAANNNNNGTGG	2 cut(s)	330, 365
CviAII	CATG	5 cut(s)	409, 443, 901, 988, 995
CviQI	GTAC	9 cut(s)	236, 523, 1068, 1080, 1576, 1660, 1679, 1769, 1781
DdeI	CTNAG	6 cut(s)	21, 426, 563, 864, 1265, 1649
DinI	GGCGCC	1 cut(s)	1707
DraI	TTTAAA	1 cut(s)	475
EaeI	YGGCCR	2 cut(s)	1096, 1382
Eam1104I	CTCTTC	9 cut(s)	78, 97, 504, 788, 794, 867, 912, 1433, 1601
EarI	CTCTTC	9 cut(s)	78, 97, 504, 788, 794, 867, 912, 1433, 1601
EciI	GGCGGA	1 cut(s)	1287
Eco130I	CCWWGG	4 cut(s)	285, 408, 987, 1666
Eco47I	GGWCC	1 cut(s)	1141
Eco57I	CTGAAG	4 cut(s)	179, 538, 639, 1767
Eco88I	CYCGRG	1 cut(s)	1621
EcoRI	GAATTC	1 cut(s)	1802
EcoRII	CCWGG	1 cut(s)	362
EcoT14I	CCWWGG	4 cut(s)	285, 408, 987, 1666
EgeI	GGCGCC	1 cut(s)	1707
EheI	GGCGCC	1 cut(s)	1707
ErhI	CCWWGG	4 cut(s)	285, 408, 987, 1666
FaeI	CATG	5 cut(s)	412, 446, 904, 991, 998
FalI	AAGNNNNNCTT	2 cut(s)	909, 941
FaqI	GGGAC	2 cut(s)	1127, 1403
FatI	CATG	5 cut(s)	408, 442, 900, 987, 994
FbaI	TGATCA	4 cut(s)	256, 736, 1111, 1407
FblI	GTMKAC	1 cut(s)	1169
Fnu4HI	GCNGC	8 cut(s)	45, 191, 247, 380, 578, 1701, 1704, 1788
FokI	GGATG	4 cut(s)	979, 1117, 1522, 1607
Fsp4HI	GCNGC	8 cut(s)	45, 191, 247, 380, 578, 1701, 1704, 1788
FspBI	CTAG	9 cut(s)	354, 680, 1065, 1071, 1089, 1251, 1314, 1344, 1742
GlaI	GCGC	3 cut(s)	250, 1362, 1707
GluI	GCNGC	8 cut(s)	45, 191, 247, 380, 578, 1701, 1704, 1788
GsaI	CCCAGC	1 cut(s)	20
GsuI	CTGGAG	1 cut(s)	385
HaeII	RGCGCY	1 cut(s)	1709
HaeIII	GGCC	3 cut(s)	699, 1098, 1384
HapII	CCGG	5 cut(s)	394, 1417, 1709, 1724, 1784
HhaI	GCGC	3 cut(s)	251, 1363, 1708
Hin1I	GRCGYC	1 cut(s)	1706
Hin1II	CATG	5 cut(s)	412, 446, 904, 991, 998
Hin6I	GCGC	3 cut(s)	249, 1361, 1706
HinP1I	GCGC	3 cut(s)	249, 1361, 1706
HindIII	AAGCTT	3 cut(s)	455, 923, 939
HinfI	GANTC	5 cut(s)	12, 722, 877, 1497, 1619
HpaII	CCGG	5 cut(s)	394, 1417, 1709, 1724, 1784
HphI	GGTGA	7 cut(s)	233, 717, 916, 1025, 1685, 1713, 1763
Hpy166II	GTNNAC	5 cut(s)	432, 850, 1162, 1170, 1600
Hpy188I	TCNGA	8 cut(s)	401, 1321, 1351, 1373, 1407, 1516, 1690, 1808
Hpy188III	TCNNGA	9 cut(s)	51, 179, 260, 394, 450, 719, 1042, 1115, 1304
Hpy8I	GTNNAC	5 cut(s)	432, 850, 1162, 1170, 1600
HpyAV	CCTTC	4 cut(s)	106, 124, 1695, 1742
HpyCH4III	ACNGT	2 cut(s)	745, 1488
HpyCH4IV	ACGT	1 cut(s)	612
HpyF10VI	GCNNNNNNNGC	6 cut(s)	196, 388, 577, 1266, 1478, 1784
HpyF3I	CTNAG	6 cut(s)	21, 426, 563, 864, 1265, 1649
HpySE526I	ACGT	1 cut(s)	612
Hsp92I	GRCGYC	1 cut(s)	1706
Hsp92II	CATG	5 cut(s)	412, 446, 904, 991, 998
HspAI	GCGC	3 cut(s)	249, 1361, 1706
KasI	GGCGCC	1 cut(s)	1705
Kpn2I	TCCGGA	1 cut(s)	393
Ksp22I	TGATCA	4 cut(s)	256, 736, 1111, 1407
LmnI	GCTCC	5 cut(s)	396, 976, 1322, 1469, 1486
Lsp1109I	GCAGC	5 cut(s)	56, 202, 366, 589, 1799
LweI	GCATC	3 cut(s)	327, 341, 1278
MaeI	CTAG	9 cut(s)	354, 680, 1065, 1071, 1089, 1251, 1314, 1344, 1742
MaeII	ACGT	1 cut(s)	612
MaeIII	GTNAC	3 cut(s)	368, 723, 1523
MbiI	CCGCTC	1 cut(s)	1719
MfeI	CAATTG	1 cut(s)	26
MflI	RGATCY	2 cut(s)	401, 712
MlsI	TGGCCA	1 cut(s)	1098
MluCI	AATT	9 cut(s)	26, 35, 304, 347, 415, 1029, 1049, 1122, 1802
MluNI	TGGCCA	1 cut(s)	1098
Mly113I	GGCGCC	1 cut(s)	1706
MlyI	GAGTC	4 cut(s)	21, 731, 871, 1613
MmeI	TCCRAC	2 cut(s)	133, 1494
Mox20I	TGGCCA	1 cut(s)	1098
MroI	TCCGGA	1 cut(s)	393
MroXI	GAANNNNTTC	3 cut(s)	419, 830, 1049
MscI	TGGCCA	1 cut(s)	1098
MseI	TTAA	2 cut(s)	474, 885
Msp20I	TGGCCA	1 cut(s)	1098
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	5 cut(s)	394, 1417, 1709, 1724, 1784
MspR9I	CCNGG	1 cut(s)	364
MunI	CAATTG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	364
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	6 cut(s)	196, 388, 577, 1266, 1478, 1784
NarI	GGCGCC	1 cut(s)	1706
NcoI	CCATGG	2 cut(s)	408, 987
NlaIII	CATG	5 cut(s)	412, 446, 904, 991, 998
NlaIV	GGNNCC	6 cut(s)	422, 714, 1143, 1471, 1482, 1707
NmeAIII	GCCGAG	1 cut(s)	1410
NmuCI	GTSAC	1 cut(s)	723
NspI	RCATGY	1 cut(s)	446
PaeR7I	CTCGAG	1 cut(s)	1621
PaqCI	CACCTGC	1 cut(s)	1001
PciI	ACATGT	1 cut(s)	442
PcsI	WCGNNNNNNNCGW	1 cut(s)	1619
PdmI	GAANNNNTTC	3 cut(s)	419, 830, 1049
PfeI	GAWTC	1 cut(s)	1497
PflFI	GACNNNGTC	1 cut(s)	1394
PkrI	GCNGC	8 cut(s)	46, 192, 248, 381, 579, 1702, 1705, 1789
PleI	GAGTC	4 cut(s)	20, 730, 871, 1613
PluTI	GGCGCC	1 cut(s)	1709
PpsI	GAGTC	4 cut(s)	20, 730, 871, 1613
PscI	ACATGT	1 cut(s)	442
Psp6I	CCWGG	1 cut(s)	362
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	6 cut(s)	422, 714, 1143, 1471, 1482, 1707
PspPI	GGNCC	1 cut(s)	1141
PspXI	VCTCGAGB	1 cut(s)	1621
PstNI	CAGNNNCTG	1 cut(s)	220
PsuI	RGATCY	2 cut(s)	401, 712
PsyI	GACNNNGTC	1 cut(s)	1394
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	9 cut(s)	237, 524, 1069, 1081, 1577, 1661, 1680, 1770, 1782
RsaNI	GTAC	9 cut(s)	236, 523, 1068, 1080, 1576, 1660, 1679, 1769, 1781
SaqAI	TTAA	2 cut(s)	474, 885
SatI	GCNGC	8 cut(s)	45, 191, 247, 380, 578, 1701, 1704, 1788
Sau96I	GGNCC	1 cut(s)	1141
ScaI	AGTACT	4 cut(s)	237, 1069, 1081, 1577
SchI	GAGTC	4 cut(s)	21, 731, 871, 1613
ScrFI	CCNGG	1 cut(s)	364
SfaNI	GCATC	3 cut(s)	327, 341, 1278
SfoI	GGCGCC	1 cut(s)	1707
Sfr274I	CTCGAG	1 cut(s)	1621
SinI	GGWCC	1 cut(s)	1141
SlaI	CTCGAG	1 cut(s)	1621
SmlI	CTYRAG	6 cut(s)	49, 177, 448, 572, 717, 1621
SmoI	CTYRAG	6 cut(s)	49, 177, 448, 572, 717, 1621
SpeI	ACTAGT	1 cut(s)	1070
Sse9I	AATT	9 cut(s)	26, 35, 304, 347, 415, 1029, 1049, 1122, 1802
SsiI	CCGC	7 cut(s)	244, 247, 1298, 1682, 1700, 1703, 1717
SspDI	GGCGCC	1 cut(s)	1705
SspI	AATATT	1 cut(s)	82
SspMI	CTAG	9 cut(s)	354, 680, 1065, 1071, 1089, 1251, 1314, 1344, 1742
StyD4I	CCNGG	1 cut(s)	362
StyI	CCWWGG	4 cut(s)	285, 408, 987, 1666
TaaI	ACNGT	2 cut(s)	745, 1488
TaiI	ACGT	1 cut(s)	615
TaqI	TCGA	6 cut(s)	6, 117, 302, 315, 335, 1622
TaqII	GACCGA	1 cut(s)	1241
TasI	AATT	9 cut(s)	26, 35, 304, 347, 415, 1029, 1049, 1122, 1802
TatI	WGTACW	5 cut(s)	235, 1067, 1079, 1575, 1659
TauI	GCSGC	3 cut(s)	249, 1703, 1706
TfiI	GAWTC	1 cut(s)	1497
Tru1I	TTAA	2 cut(s)	474, 885
Tru9I	TTAA	2 cut(s)	474, 885
TscAI	CASTG	3 cut(s)	393, 1227, 1491
TseFI	GTSAC	1 cut(s)	723
TseI	GCWGC	5 cut(s)	44, 190, 379, 577, 1787
Tsp45I	GTSAC	1 cut(s)	723
TspDTI	ATGAA	6 cut(s)	28, 930, 983, 1011, 1281, 1631
TspGWI	ACGGA	2 cut(s)	216, 220
TspRI	CASTG	3 cut(s)	393, 1227, 1491
Tth111I	GACNNNGTC	1 cut(s)	1394
VpaK11BI	GGWCC	1 cut(s)	1141
XapI	RAATTY	3 cut(s)	304, 1049, 1802
XceI	RCATGY	1 cut(s)	446
XhoI	CTCGAG	1 cut(s)	1621
XmiI	GTMKAC	1 cut(s)	1169
XmnI	GAANNNNTTC	3 cut(s)	419, 830, 1049
XspI	CTAG	9 cut(s)	354, 680, 1065, 1071, 1089, 1251, 1314, 1344, 1742
ZrmI	AGTACT	4 cut(s)	237, 1069, 1081, 1577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.