Rw3G002820
MYB Family

Trihelix transcription factor

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
2515567 .. 2518118
2552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G002820.1

Sequence Viewer

Length: 1407 bp
ATGTTCGATGGAGTCCCAGCTGAGCAATTGCACCAATTCATAGCAGCCTCAAGAACTTCACTCCCTCTCCCTCTTCCCAATATTCCTCTCTCTTCCTTCCCTAATCTCCAACCCTTCGATCATCATCATCATCATCATCATAGCTACAACATCATCAACCCTCCTCCCCCAACACCTCAAGAACTTGTGCAGCTTCAGCCACCACCTCACAATCAGCTTCTGCTTCCGTCCGTAGTACTTCACCGCCGCGCAAATGATCAAGAGAAGCAAGAAAACAGCACTACCTTGGTCTTGCCCTCATCGAATTTGGAGATCGAACGAGAACGAACCGCATCGATGCCACCTGAATTGCCTAGCGATCCCTGGAGTAACGATGAGCTGCTTGCACTGCTCCGGATCAGATCTACCATGGAGAATTGGTTCCCTGAGTTCACTTGGGAACATGTCTCAAGAAAGCTTGCAGAGGTTGGCTTTAAAAGGAGTGCAGAGAAGTGCAAGGAGAAGTTTGAAGAGGAAAGCAGGTACTTCAACAACATCAACTTCAACAAGAACTTCAGGTTTCTTAGTGAGCTTGAGCAGCTCTATCAACCACCAGTTGAGCCACCTCAAAACGTAGCTGAAGATCAACCAGAAAAGAATACCGAAAAAGCAGTAGAAGTTGAAAAGCCAAGTGAAGAACTAGGAAACCAAGATAAAGGCCAAACAGCTTTGGATCCTCAAGAGTCACCAAGCAATGATCAAACAGTCAGTGAGACACAGGTAGAGATTGTTAGAGCAAAGAGCAACAACAAGAAGAGGAAGAGGCAGAGGAGATTTGAAATGCTGAAAGGTTTCTGTGAAGACATAGTGAACAAGTTGATGGCTCAGCAAGAAGAGACTCACAGTAAGCTACTTGAAGACATGGTGAGGAGAGATGAAGAGAAGCTTGCAAAGGAAGAAGCTTGGAAGAAGCAAGAGATGGATAGGATGAACAAGGAGCTTGAAACCATGGCACATGAACAAGCTGTTGCAGGTGATAGACAAGCTACAATTATTCAGTTCTTGAAGAAATTCACATCATCAGCTAGTACTAGTAGTAGTACTAACCCTAGTAATGGCCAAAAGGAAAATGATCAAGAACCAATTACATCATCCACAATGGTCCCATCTGCAAGCAATGTTCACAAGTCTACTACTACTACTTCTTTCCACACCCAAAATAATCCAAGCACACCCACTTCACTGACCGAAGCCATTGCACCCCAAAGCCCTAGTTCAAGCACTCTAAGCATCAATCCAAAACTGCCCATTTCATCTCCGCCTCCTGAAAACCCTAGCTCCGATCATCTCAAAACCCAAAACCCTAGCTCGGACGACAAAGCCAAGACCTCGGAAAGAGGTGGCCAAGGGACGAAGTCTTGGCTCTGA

Protein Analysis

468

Amino Acids

53.06

Weight (kDa)

5.66

Isoelectric Point (pI)

66.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 120 - 182 2.4e-11 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1001
Acc36I ACCTGC 2 cut(s) 510, 1001
AccI GTMKAC 1 cut(s) 1169
AccII CGCG 1 cut(s) 249
AccIII TCCGGA 1 cut(s) 393
AciI CCGC 4 cut(s) 244, 247, 330, 1298
AclWI GGATC 4 cut(s) 353, 404, 707, 720
AcoI YGGCCR 2 cut(s) 1096, 1381
AcsI RAATTY 2 cut(s) 304, 1049
AcuI CTGAAG 3 cut(s) 179, 538, 639
AfaI GTAC 4 cut(s) 237, 524, 1069, 1081
AfiI CCNNNNNNNGG 2 cut(s) 1094, 1348
AflIII ACRYGT 1 cut(s) 442
AgsI TTSAA 9 cut(s) 509, 529, 544, 662, 818, 896, 983, 1045, 1257
AhlI ACTAGT 1 cut(s) 1070
AjnI CCWGG 1 cut(s) 362
AloI GAACNNNNNNTCC 2 cut(s) 404, 436
Alw26I GTCTC 3 cut(s) 451, 746, 869
AlwI GGATC 4 cut(s) 353, 404, 707, 720
AlwNI CAGNNNCTG 1 cut(s) 220
Aor13HI TCCGGA 1 cut(s) 393
AoxI GGCC 3 cut(s) 697, 1096, 1381
ApeKI GCWGC 4 cut(s) 44, 190, 379, 577
ApoI RAATTY 2 cut(s) 304, 1049
Asp700I GAANNNNTTC 3 cut(s) 419, 830, 1049
AspLEI GCGC 1 cut(s) 251
AspS9I GGNCC 1 cut(s) 1141
AsuHPI GGTGA 4 cut(s) 233, 717, 916, 1025
AvaII GGWCC 1 cut(s) 1141
BalI TGGCCA 2 cut(s) 1098, 1383
BamHI GGATCC 1 cut(s) 712
BbsI GAAGAC 2 cut(s) 846, 903
BbvI GCAGC 4 cut(s) 56, 202, 366, 589
BccI CCATC 4 cut(s) 2, 853, 952, 1153
BcgI CGANNNNNNTGC 2 cut(s) 1217, 1251
BciT130I CCWGG 1 cut(s) 364
BclI TGATCA 3 cut(s) 256, 736, 1111
BcoDI GTCTC 3 cut(s) 451, 746, 869
BcuI ACTAGT 1 cut(s) 1070
BfaI CTAG 8 cut(s) 354, 680, 1065, 1071, 1089, 1251, 1314, 1344
BfuAI ACCTGC 2 cut(s) 510, 1001
BglII AGATCT 1 cut(s) 401
BisI GCNGC 5 cut(s) 45, 191, 247, 380, 578
BlpI GCTNAGC 2 cut(s) 21, 864
BlsI GCNGC 5 cut(s) 46, 192, 248, 381, 579
BmcAI AGTACT 3 cut(s) 237, 1069, 1081
Bme1390I CCNGG 1 cut(s) 364
Bme18I GGWCC 1 cut(s) 1141
BmgT120I GGNCC 1 cut(s) 1141
BmiI GGNNCC 3 cut(s) 422, 714, 1143
BmrFI CCNGG 1 cut(s) 364
BmsI GCATC 3 cut(s) 327, 341, 1278
BpiI GAAGAC 2 cut(s) 846, 903
BpmI CTGGAG 1 cut(s) 385
Bpu1102I GCTNAGC 2 cut(s) 21, 864
BpuEI CTTGAG 5 cut(s) 34, 162, 433, 593, 702
Bsa29I ATCGAT 1 cut(s) 335
BsaBI GATNNNNATC 1 cut(s) 123
BsaJI CCNNGG 6 cut(s) 285, 362, 408, 987, 1368, 1384
BsaWI WCCGGW 1 cut(s) 393
BsaXI ACNNNNNCTCC 6 cut(s) 51, 81, 404, 434, 1301, 1331
Bsc4I CCNNNNNNNGG 2 cut(s) 1094, 1348
Bse1I ACTGG 1 cut(s) 593
Bse3DI GCAATG 3 cut(s) 739, 1162, 1233
Bse8I GATNNNNATC 1 cut(s) 123
BseAI TCCGGA 1 cut(s) 393
BseBI CCWGG 1 cut(s) 364
BseCI ATCGAT 1 cut(s) 335
BseDI CCNNGG 6 cut(s) 285, 362, 408, 987, 1368, 1384
BseGI GGATG 2 cut(s) 972, 1130
BseJI GATNNNNATC 1 cut(s) 123
BseLI CCNNNNNNNGG 2 cut(s) 1094, 1348
BseMI GCAATG 3 cut(s) 739, 1162, 1233
BseMII CTCAG 3 cut(s) 12, 417, 878
BseNI ACTGG 1 cut(s) 593
BseRI GAGGAG 3 cut(s) 153, 823, 922
BseXI GCAGC 4 cut(s) 56, 202, 366, 589
BseYI CCCAGC 1 cut(s) 16
BsgI GTGCAG 2 cut(s) 209, 504
Bsh1236I CGCG 1 cut(s) 249
BshFI GGCC 3 cut(s) 699, 1098, 1383
BshVI ATCGAT 1 cut(s) 335
BsiSI CCGG 1 cut(s) 394
BslFI GGGAC 2 cut(s) 1127, 1402
BslI CCNNNNNNNGG 2 cut(s) 1094, 1348
BsmAI GTCTC 3 cut(s) 451, 746, 869
BsmFI GGGAC 2 cut(s) 1127, 1402
BsnI GGCC 3 cut(s) 699, 1098, 1383
Bsp13I TCCGGA 1 cut(s) 393
Bsp1720I GCTNAGC 2 cut(s) 21, 864
Bsp19I CCATGG 2 cut(s) 408, 987
BspACI CCGC 4 cut(s) 244, 247, 330, 1298
BspANI GGCC 3 cut(s) 699, 1098, 1383
BspCNI CTCAG 3 cut(s) 13, 418, 877
BspDI ATCGAT 1 cut(s) 335
BspEI TCCGGA 1 cut(s) 393
BspFNI CGCG 1 cut(s) 249
BspLI GGNNCC 3 cut(s) 422, 714, 1143
BspMI ACCTGC 2 cut(s) 510, 1001
BspPI GGATC 4 cut(s) 353, 404, 707, 720
BsrDI GCAATG 3 cut(s) 739, 1162, 1233
BsrI ACTGG 1 cut(s) 593
BssECI CCNNGG 6 cut(s) 285, 362, 408, 987, 1368, 1384
BssT1I CCWWGG 4 cut(s) 285, 408, 987, 1384
Bst2UI CCWGG 1 cut(s) 364
Bst4CI ACNGT 2 cut(s) 745, 884
Bst6I CTCTTC 7 cut(s) 78, 97, 504, 788, 794, 867, 912
BstC8I GCNNGC 4 cut(s) 384, 459, 927, 1153
BstDEI CTNAG 5 cut(s) 21, 426, 563, 864, 1265
BstDSI CCRYGG 2 cut(s) 408, 987
BstF5I GGATG 2 cut(s) 972, 1130
BstFNI CGCG 1 cut(s) 249
BstHHI GCGC 1 cut(s) 251
BstMAI GTCTC 3 cut(s) 451, 746, 869
BstMWI GCNNNNNNNGC 4 cut(s) 196, 388, 577, 1266
BstNI CCWGG 1 cut(s) 364
BstNSI RCATGY 1 cut(s) 446
BstSCI CCNGG 1 cut(s) 362
BstUI CGCG 1 cut(s) 249
BstV1I GCAGC 4 cut(s) 56, 202, 366, 589
BstV2I GAAGAC 2 cut(s) 846, 903
BstX2I RGATCY 2 cut(s) 401, 712
BstYI RGATCY 2 cut(s) 401, 712
Bsu15I ATCGAT 1 cut(s) 335
BsuRI GGCC 3 cut(s) 699, 1098, 1383
BsuTUI ATCGAT 1 cut(s) 335
BtgI CCRYGG 2 cut(s) 408, 987
BtsCI GGATG 2 cut(s) 972, 1130
BtsI GCAGTG 1 cut(s) 386
BtsIMutI CAGTG 3 cut(s) 386, 754, 1220
BveI ACCTGC 2 cut(s) 510, 1001
Cac8I GCNNGC 4 cut(s) 384, 459, 927, 1153
CaiI CAGNNNCTG 1 cut(s) 220
CfoI GCGC 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 1141
ClaI ATCGAT 1 cut(s) 335
Csp6I GTAC 4 cut(s) 236, 523, 1068, 1080
CspCI CAANNNNNGTGG 2 cut(s) 330, 365
CviAII CATG 5 cut(s) 409, 443, 901, 988, 995
CviQI GTAC 4 cut(s) 236, 523, 1068, 1080
DdeI CTNAG 5 cut(s) 21, 426, 563, 864, 1265
DraI TTTAAA 1 cut(s) 475
EaeI YGGCCR 2 cut(s) 1096, 1381
Eam1104I CTCTTC 7 cut(s) 78, 97, 504, 788, 794, 867, 912
EarI CTCTTC 7 cut(s) 78, 97, 504, 788, 794, 867, 912
EciI GGCGGA 1 cut(s) 1287
Eco130I CCWWGG 4 cut(s) 285, 408, 987, 1384
Eco47I GGWCC 1 cut(s) 1141
Eco57I CTGAAG 3 cut(s) 179, 538, 639
EcoRII CCWGG 1 cut(s) 362
EcoT14I CCWWGG 4 cut(s) 285, 408, 987, 1384
ErhI CCWWGG 4 cut(s) 285, 408, 987, 1384
FaeI CATG 5 cut(s) 412, 446, 904, 991, 998
FaiI YATR 8 cut(s) 41, 141, 410, 444, 845, 902, 989, 996
FalI AAGNNNNNCTT 2 cut(s) 909, 941
FaqI GGGAC 2 cut(s) 1127, 1402
FatI CATG 5 cut(s) 408, 442, 900, 987, 994
FbaI TGATCA 3 cut(s) 256, 736, 1111
FblI GTMKAC 1 cut(s) 1169
Fnu4HI GCNGC 5 cut(s) 45, 191, 247, 380, 578
FokI GGATG 2 cut(s) 979, 1117
Fsp4HI GCNGC 5 cut(s) 45, 191, 247, 380, 578
FspBI CTAG 8 cut(s) 354, 680, 1065, 1071, 1089, 1251, 1314, 1344
GlaI GCGC 1 cut(s) 250
GluI GCNGC 5 cut(s) 45, 191, 247, 380, 578
GsaI CCCAGC 1 cut(s) 20
GsuI CTGGAG 1 cut(s) 385
HaeIII GGCC 3 cut(s) 699, 1098, 1383
HapII CCGG 1 cut(s) 394
HhaI GCGC 1 cut(s) 251
Hin1II CATG 5 cut(s) 412, 446, 904, 991, 998
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
HindIII AAGCTT 3 cut(s) 455, 923, 939
HinfI GANTC 3 cut(s) 12, 722, 877
HpaII CCGG 1 cut(s) 394
HphI GGTGA 4 cut(s) 233, 717, 916, 1025
Hpy166II GTNNAC 4 cut(s) 432, 850, 1162, 1170
Hpy188I TCNGA 5 cut(s) 401, 1321, 1351, 1372, 1406
Hpy188III TCNNGA 9 cut(s) 51, 179, 260, 394, 450, 719, 1042, 1115, 1304
Hpy8I GTNNAC 4 cut(s) 432, 850, 1162, 1170
HpyAV CCTTC 2 cut(s) 106, 124
HpyCH4III ACNGT 2 cut(s) 745, 884
HpyCH4IV ACGT 1 cut(s) 612
HpyF10VI GCNNNNNNNGC 4 cut(s) 196, 388, 577, 1266
HpyF3I CTNAG 5 cut(s) 21, 426, 563, 864, 1265
HpySE526I ACGT 1 cut(s) 612
Hsp92II CATG 5 cut(s) 412, 446, 904, 991, 998
HspAI GCGC 1 cut(s) 249
Kpn2I TCCGGA 1 cut(s) 393
Ksp22I TGATCA 3 cut(s) 256, 736, 1111
LmnI GCTCC 3 cut(s) 396, 976, 1322
Lsp1109I GCAGC 4 cut(s) 56, 202, 366, 589
LweI GCATC 3 cut(s) 327, 341, 1278
MaeI CTAG 8 cut(s) 354, 680, 1065, 1071, 1089, 1251, 1314, 1344
MaeII ACGT 1 cut(s) 612
MaeIII GTNAC 2 cut(s) 368, 723
MfeI CAATTG 1 cut(s) 26
MflI RGATCY 2 cut(s) 401, 712
MlsI TGGCCA 2 cut(s) 1098, 1383
MluCI AATT 8 cut(s) 26, 35, 304, 347, 415, 1029, 1049, 1122
MluNI TGGCCA 2 cut(s) 1098, 1383
MlyI GAGTC 3 cut(s) 21, 731, 871
MmeI TCCRAC 1 cut(s) 133
Mox20I TGGCCA 2 cut(s) 1098, 1383
MroI TCCGGA 1 cut(s) 393
MroXI GAANNNNTTC 3 cut(s) 419, 830, 1049
MscI TGGCCA 2 cut(s) 1098, 1383
MseI TTAA 1 cut(s) 474
Msp20I TGGCCA 2 cut(s) 1098, 1383
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 1 cut(s) 394
MspR9I CCNGG 1 cut(s) 364
MunI CAATTG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 364
MvnI CGCG 1 cut(s) 249
MwoI GCNNNNNNNGC 4 cut(s) 196, 388, 577, 1266
NcoI CCATGG 2 cut(s) 408, 987
NlaIII CATG 5 cut(s) 412, 446, 904, 991, 998
NlaIV GGNNCC 3 cut(s) 422, 714, 1143
NmuCI GTSAC 1 cut(s) 723
NspI RCATGY 1 cut(s) 446
PaqCI CACCTGC 1 cut(s) 1001
PciI ACATGT 1 cut(s) 442
PdmI GAANNNNTTC 3 cut(s) 419, 830, 1049
PflFI GACNNNGTC 1 cut(s) 1393
PkrI GCNGC 5 cut(s) 46, 192, 248, 381, 579
PleI GAGTC 3 cut(s) 20, 730, 871
PpsI GAGTC 3 cut(s) 20, 730, 871
PscI ACATGT 1 cut(s) 442
Psp6I CCWGG 1 cut(s) 362
PspFI CCCAGC 1 cut(s) 16
PspGI CCWGG 1 cut(s) 362
PspN4I GGNNCC 3 cut(s) 422, 714, 1143
PspPI GGNCC 1 cut(s) 1141
PstNI CAGNNNCTG 1 cut(s) 220
PsuI RGATCY 2 cut(s) 401, 712
PsyI GACNNNGTC 1 cut(s) 1393
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 4 cut(s) 237, 524, 1069, 1081
RsaNI GTAC 4 cut(s) 236, 523, 1068, 1080
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 5 cut(s) 45, 191, 247, 380, 578
Sau96I GGNCC 1 cut(s) 1141
ScaI AGTACT 3 cut(s) 237, 1069, 1081
SchI GAGTC 3 cut(s) 21, 731, 871
ScrFI CCNGG 1 cut(s) 364
SfaNI GCATC 3 cut(s) 327, 341, 1278
SinI GGWCC 1 cut(s) 1141
SmlI CTYRAG 5 cut(s) 49, 177, 448, 572, 717
SmoI CTYRAG 5 cut(s) 49, 177, 448, 572, 717
SpeI ACTAGT 1 cut(s) 1070
Sse9I AATT 8 cut(s) 26, 35, 304, 347, 415, 1029, 1049, 1122
SsiI CCGC 4 cut(s) 244, 247, 330, 1298
SspI AATATT 1 cut(s) 82
SspMI CTAG 8 cut(s) 354, 680, 1065, 1071, 1089, 1251, 1314, 1344
StyD4I CCNGG 1 cut(s) 362
StyI CCWWGG 4 cut(s) 285, 408, 987, 1384
TaaI ACNGT 2 cut(s) 745, 884
TaiI ACGT 1 cut(s) 615
TaqI TCGA 5 cut(s) 6, 117, 302, 315, 335
TaqII GACCGA 1 cut(s) 1241
TasI AATT 8 cut(s) 26, 35, 304, 347, 415, 1029, 1049, 1122
TatI WGTACW 3 cut(s) 235, 1067, 1079
TauI GCSGC 1 cut(s) 249
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TscAI CASTG 3 cut(s) 393, 754, 1227
TseFI GTSAC 1 cut(s) 723
TseI GCWGC 4 cut(s) 44, 190, 379, 577
Tsp45I GTSAC 1 cut(s) 723
TspDTI ATGAA 5 cut(s) 28, 930, 983, 1011, 1281
TspGWI ACGGA 2 cut(s) 216, 220
TspRI CASTG 3 cut(s) 393, 754, 1227
Tth111I GACNNNGTC 1 cut(s) 1393
VpaK11BI GGWCC 1 cut(s) 1141
XapI RAATTY 2 cut(s) 304, 1049
XceI RCATGY 1 cut(s) 446
XmiI GTMKAC 1 cut(s) 1169
XmnI GAANNNNTTC 3 cut(s) 419, 830, 1049
XspI CTAG 8 cut(s) 354, 680, 1065, 1071, 1089, 1251, 1314, 1344
ZrmI AGTACT 3 cut(s) 237, 1069, 1081
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.