AT5G28530

protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
10524411 .. 10527566
3156 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G28530.5

Sequence Viewer

Length: 2058 bp
ATGGCGTTGAAGCCATTGAACAACATCTGGATTCGTCGTCAACAATGTCCTTGTGGTGATTGGAAATGCTACATCAGACTCGAAGAAGACGAATCAACAATAACAAAAAGCGAAATCGAATCAACACCAACACCAACATCACAATACGATACTGTGTTTACACCATACGTAGGTCAAATCTTCACCACAGACGATGAAGCATTTGAGTATTACAGTACATTCGCTAGAAAGAGTGGTTTCTCGATTCGTAAAGCACGATCTACAGAGAGTCAGAATCTAGGTGTTTATAGAAGAGATTTCGTTTGTTATCGTTCTGGTTTTAATCAACCTAGGAAGAAAGCTAATGTAGAGCATCCAAGAGAGCGTAAGTCTGTTAGATGTGGTTGTGATGGTAAGTTGTATTTGACTAAAGAAGTTGTTGATGGTGTTAGTCATTGGTATGTTTCACAGTTTAGTAATGTTCATAATCATGAGCTTTTGGAAGATGATCAAGTTAGGTTGCTTCCTGCTTATAGGAAGATTCAGCAAAGTGATCAGGAGAGGATTCTTTTGTTGTCGAAAGCGGGGTTTCCGGTTAATCGGATTGTTAAGTTGTTGGAGTTAGAGAAAGGTGTTGTGAGTGGGCAGTTACCGTTTATTGAGAAAGATGTTAGGAATTTTGTTAGAGCTTGTAAGAAGAGTGTTCAAGAGAATGATGCTTTTATGACTGAGAAGCGGGAGAGTGATACGTTGGAGCTTCTTGAGTGTTGTAAAGGTTTGGCTGAGAGAGATATGGATTTTGTTTATGATTGTACTTCTGATGAGAATCAGAAAGTTGAGAATATTGCTTGGGCTTATGGAGATTCTGTTCGGGGTTACTCTTTGTTTGGGGATGTGGTTGTTTTCGATACTAGTTATCGGTCGGTACCTTATGGATTGCTGCTTGGTGTTTTTTTTGGGATAGATAATAATGGAAAGGCGATGCTTTTGGGATGTGTTTTGCTGCAAGATGAGAGTTGTCGTTCTTTCACATGGGCTTTACAGACTTTTGTTCGTTTCATGAGGGGACGACATCCTCAGACAATTTTGACGGATATAGATACAGGACTTAAAGATGCTATTGGGAGGGAAATGCCAAATACTAACCATGTGGTATTTATGTCGCACATTGTCTCCAAATTAGCTAGCTGGTTTTCTCAGACACTTGGGTCGCACTATGAAGAATTTAGAGCAGGGTTTGATATGTTATGCCGGGCAGGGAATGTGGATGAATTTGAACAGCAGTGGGATCTTCTTGTCACTCGGTTTGGTCTTGTTCCAGATAGGCATGCGGCTTTGCTTTATTCGTGCCGAGCATCTTGGTTACCTTGTTGCATCAGAGAACATTTTGTAGCTCAAACTATGACTTCTGAGTTTAATCTATCTATAGATTCTTTCTTGAAAAGAGTTGTTGATGGAGCGACATGCATGCAACTATTACTTGAAGAGAGTGCATTGCAGGTTAGTGCTGCTGCAAGTCTAGCCAAGCAAATCCTGCCACGATTCACATATCCGAGTTTGAAAACCTGTATGCCTATGGAAGATCATGCAAGGGGGATTCTGACGCCTTATGCCTTTAGCGTATTGCAAAACGAAATGGTTTTGTCTGTGCAGTATGCTGTGGCTGAGATGGCCAATGGTCCATTCATCGTACATCACTATAAGAAAATGGAAGGGGAATGTTGTGTGATCTGGAACCCAGAAAACGAGGAGATCCAATGTTCGTGCAAGGAATTTGAGCATTCCGGAATCTTGTGCAGGCACACTCTTCGGGTACTGACCGTGAAGAACTGCTTCCATATACCTGAACAGTATTTTCTATTACGATGGAGACAAGAAAGTCCTCATGTAGCTACAGAGAATCAGAATGGACAGGGCATTGGCGATGACTCTGCTCAAACATTTCATTCGCTCACAGAAACTCTCCTCACAGAGTCTATGATCTCAAAGGATCGACTTGATTACGCTAACCAAGAACTTTCTTTACTTATCGATCGTGTGAGAAATACAGCACCAGCTAATTGCTTGTATCAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

685

Amino Acids

78.52

Weight (kDa)

5.78

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 69 - 160 2.7e-24 FAR1 DNA-binding domain
HTH_FAR1 PF26175 173 - 226 2e-24 FAR1 HTH-like domain
MULE PF10551 247 - 322 2.4e-13 MULE transposase domain
SWIM PF04434 501 - 535 1.9e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1186, 1857
Acc36I ACCTGC 1 cut(s) 1468
Acc65I GGTACC 1 cut(s) 904
AccB1I GGYRCC 1 cut(s) 904
AccIII TCCGGA 1 cut(s) 1763
AciI CCGC 3 cut(s) 563, 715, 1310
AclWI GGATC 3 cut(s) 1275, 1726, 1977
AcoI YGGCCR 1 cut(s) 1650
AcsI RAATTY 4 cut(s) 655, 1202, 1250, 1751
AcyI GRCGYC 1 cut(s) 1583
AfaI GTAC 5 cut(s) 217, 793, 906, 1671, 1794
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 7 cut(s) 10, 19, 686, 1256, 1420, 1463, 1540
AhlI ACTAGT 1 cut(s) 890
AjuI GAANNNNNNNTTGG 2 cut(s) 1646, 1678
AloI GAACNNNNNNTCC 2 cut(s) 831, 863
AluBI AGCT 9 cut(s) 341, 475, 668, 736, 1163, 1167, 1373, 1871, 2036
AluI AGCT 9 cut(s) 341, 475, 668, 736, 1163, 1167, 1373, 1871, 2036
Alw26I GTCTC 2 cut(s) 1156, 1843
AlwI GGATC 3 cut(s) 1275, 1726, 1977
Aor13HI TCCGGA 1 cut(s) 1763
AoxI GGCC 1 cut(s) 1650
ApeKI GCWGC 4 cut(s) 919, 982, 1487, 1490
ApoI RAATTY 4 cut(s) 655, 1202, 1250, 1751
Asp700I GAANNNNTTC 1 cut(s) 1811
Asp718I GGTACC 1 cut(s) 904
AspA2I CCTAGG 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 1658
AsuC2I CCSGG 1 cut(s) 1232
AsuHPI GGTGA 2 cut(s) 68, 175
AsuNHI GCTAGC 1 cut(s) 1163
AvaII GGWCC 1 cut(s) 1658
AvrII CCTAGG 1 cut(s) 329
BalI TGGCCA 1 cut(s) 1652
BanI GGYRCC 1 cut(s) 904
BbsI GAAGAC 1 cut(s) 93
BbvI GCAGC 4 cut(s) 906, 969, 1474, 1477
BccI CCATC 5 cut(s) 383, 416, 1427, 1642, 1839
BcgI CGANNNNNNTGC 6 cut(s) 1429, 1463, 1769, 1803, 1892, 1926
BclI TGATCA 2 cut(s) 487, 532
BcnI CCSGG 1 cut(s) 1232
BcoDI GTCTC 2 cut(s) 1156, 1843
BcuI ACTAGT 1 cut(s) 890
BfaI CTAG 6 cut(s) 225, 278, 330, 891, 1164, 1499
BfmI CTRYAG 3 cut(s) 261, 1404, 1872
BfuAI ACCTGC 1 cut(s) 1468
BisI GCNGC 5 cut(s) 920, 983, 1311, 1488, 1491
BlnI CCTAGG 1 cut(s) 329
BlsI GCNGC 5 cut(s) 921, 984, 1312, 1489, 1492
Bme1390I CCNGG 1 cut(s) 1232
Bme18I GGWCC 1 cut(s) 1658
BmgT120I GGNCC 1 cut(s) 1658
BmiI GGNNCC 2 cut(s) 906, 1715
BmrFI CCNGG 1 cut(s) 1232
BmsI GCATC 6 cut(s) 361, 685, 951, 1084, 1343, 1362
BmtI GCTAGC 1 cut(s) 1167
BpiI GAAGAC 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 761
BpuMI CCSGG 1 cut(s) 1232
Bsa29I ATCGAT 1 cut(s) 2010
BsaAI YACGTR 1 cut(s) 169
BsaBI GATNNNNATC 1 cut(s) 804
BsaHI GRCGYC 1 cut(s) 1583
BsaJI CCNNGG 1 cut(s) 329
BsaWI WCCGGW 2 cut(s) 571, 1763
BsaXI ACNNNNNCTCC 4 cut(s) 831, 861, 1136, 1166
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse3DI GCAATG 1 cut(s) 1472
Bse8I GATNNNNATC 1 cut(s) 804
BseAI TCCGGA 1 cut(s) 1763
BseCI ATCGAT 1 cut(s) 2010
BseDI CCNNGG 1 cut(s) 329
BseGI GGATG 5 cut(s) 352, 877, 977, 1051, 1252
BseJI GATNNNNATC 1 cut(s) 804
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMI GCAATG 1 cut(s) 1472
BseMII CTCAG 6 cut(s) 699, 753, 1070, 1190, 1380, 1635
BseRI GAGGAG 2 cut(s) 1742, 1934
BseXI GCAGC 4 cut(s) 906, 969, 1474, 1477
BsgI GTGCAG 2 cut(s) 1649, 1795
Bsh1285I CGRYCG 2 cut(s) 902, 2014
BshFI GGCC 1 cut(s) 1652
BshNI GGYRCC 1 cut(s) 904
BshVI ATCGAT 1 cut(s) 2010
BsiEI CGRYCG 2 cut(s) 902, 2014
BsiSI CCGG 3 cut(s) 572, 1231, 1764
BslFI GGGAC 1 cut(s) 1059
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 2 cut(s) 1156, 1843
BsmFI GGGAC 1 cut(s) 1059
BsmI GAATGC 1 cut(s) 1759
BsnI GGCC 1 cut(s) 1652
Bsp13I TCCGGA 1 cut(s) 1763
BspACI CCGC 3 cut(s) 563, 715, 1310
BspANI GGCC 1 cut(s) 1652
BspCNI CTCAG 6 cut(s) 700, 754, 1069, 1189, 1381, 1636
BspDI ATCGAT 1 cut(s) 2010
BspEI TCCGGA 1 cut(s) 1763
BspHI TCATGA 2 cut(s) 469, 1038
BspLI GGNNCC 2 cut(s) 906, 1715
BspMI ACCTGC 1 cut(s) 1468
BspOI GCTAGC 1 cut(s) 1167
BspPI GGATC 3 cut(s) 1275, 1726, 1977
BspT107I GGYRCC 1 cut(s) 904
BsrDI GCAATG 1 cut(s) 1472
BssECI CCNNGG 1 cut(s) 329
BssNI GRCGYC 1 cut(s) 1583
BssT1I CCWWGG 1 cut(s) 329
Bst4CI ACNGT 6 cut(s) 154, 215, 450, 633, 1801, 1830
Bst6I CTCTTC 4 cut(s) 286, 671, 1458, 1791
BstACI GRCGYC 1 cut(s) 1583
BstAPI GCANNNNNTGC 1 cut(s) 1513
BstBAI YACGTR 1 cut(s) 169
BstC8I GCNNGC 4 cut(s) 1165, 1308, 1448, 1778
BstDEI CTNAG 6 cut(s) 708, 762, 1056, 1176, 1389, 1644
BstEII GGTNACC 1 cut(s) 1341
BstF5I GGATG 5 cut(s) 352, 877, 977, 1051, 1252
BstMAI GTCTC 2 cut(s) 1156, 1843
BstMCI CGRYCG 2 cut(s) 902, 2014
BstMWI GCNNNNNNNGC 3 cut(s) 1499, 1513, 1649
BstNSI RCATGY 3 cut(s) 1310, 1446, 1450
BstPI GGTNACC 1 cut(s) 1341
BstSCI CCNGG 1 cut(s) 1230
BstSFI CTRYAG 3 cut(s) 261, 1404, 1872
BstSNI TACGTA 1 cut(s) 169
BstV1I GCAGC 4 cut(s) 906, 969, 1474, 1477
BstV2I GAAGAC 1 cut(s) 93
BstX2I RGATCY 2 cut(s) 1267, 1731
BstYI RGATCY 2 cut(s) 1267, 1731
Bsu15I ATCGAT 1 cut(s) 2010
BsuRI GGCC 1 cut(s) 1652
BsuTUI ATCGAT 1 cut(s) 2010
BtgZI GCGATG 2 cut(s) 974, 1917
BtsCI GGATG 5 cut(s) 352, 877, 977, 1051, 1252
BtsI GCAGTG 1 cut(s) 1268
BtsIMutI CAGTG 1 cut(s) 1268
BveI ACCTGC 1 cut(s) 1468
Cac8I GCNNGC 4 cut(s) 1165, 1308, 1448, 1778
CciI TCATGA 2 cut(s) 469, 1038
Cfr13I GGNCC 1 cut(s) 1658
ClaI ATCGAT 1 cut(s) 2010
CseI GACGC 1 cut(s) 1591
Csp6I GTAC 5 cut(s) 216, 792, 905, 1670, 1793
CviQI GTAC 5 cut(s) 216, 792, 905, 1670, 1793
DdeI CTNAG 6 cut(s) 708, 762, 1056, 1176, 1389, 1644
DrdI GACNNNNNNGTC 2 cut(s) 1186, 1857
DseDI GACNNNNNNGTC 2 cut(s) 1186, 1857
EaeI YGGCCR 1 cut(s) 1650
Eam1104I CTCTTC 4 cut(s) 286, 671, 1458, 1791
EarI CTCTTC 4 cut(s) 286, 671, 1458, 1791
Eco105I TACGTA 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 329
Eco47I GGWCC 1 cut(s) 1658
Eco91I GGTNACC 1 cut(s) 1341
EcoO65I GGTNACC 1 cut(s) 1341
EcoT14I CCWWGG 1 cut(s) 329
EcoT22I ATGCAT 1 cut(s) 1448
ErhI CCWWGG 1 cut(s) 329
FalI AAGNNNNNCTT 2 cut(s) 1796, 1828
FaqI GGGAC 1 cut(s) 1059
FauI CCCGC 2 cut(s) 556, 708
FbaI TGATCA 2 cut(s) 487, 532
Fnu4HI GCNGC 5 cut(s) 920, 983, 1311, 1488, 1491
FokI GGATG 5 cut(s) 339, 884, 984, 1038, 1259
Fsp4HI GCNGC 5 cut(s) 920, 983, 1311, 1488, 1491
FspBI CTAG 6 cut(s) 225, 278, 330, 891, 1164, 1499
GluI GCNGC 5 cut(s) 920, 983, 1311, 1488, 1491
HaeIII GGCC 1 cut(s) 1652
HapII CCGG 3 cut(s) 572, 1231, 1764
HgaI GACGC 1 cut(s) 1591
Hin1I GRCGYC 1 cut(s) 1583
HincII GTYRAC 1 cut(s) 41
HindII GTYRAC 1 cut(s) 41
HpaII CCGG 3 cut(s) 572, 1231, 1764
HphI GGTGA 2 cut(s) 68, 175
Hpy166II GTNNAC 2 cut(s) 41, 159
Hpy8I GTNNAC 2 cut(s) 41, 159
Hpy99I CGWCG 1 cut(s) 39
HpyAV CCTTC 1 cut(s) 1685
HpyCH4III ACNGT 6 cut(s) 154, 215, 450, 633, 1801, 1830
HpyCH4IV ACGT 2 cut(s) 168, 728
HpyF10VI GCNNNNNNNGC 3 cut(s) 1499, 1513, 1649
HpyF3I CTNAG 6 cut(s) 708, 762, 1056, 1176, 1389, 1644
HpySE526I ACGT 2 cut(s) 168, 728
Hsp92I GRCGYC 1 cut(s) 1583
Kpn2I TCCGGA 1 cut(s) 1763
KpnI GGTACC 1 cut(s) 908
Ksp22I TGATCA 2 cut(s) 487, 532
LmnI GCTCC 2 cut(s) 733, 1436
Lsp1109I GCAGC 4 cut(s) 906, 969, 1474, 1477
LweI GCATC 6 cut(s) 361, 685, 951, 1084, 1343, 1362
MaeI CTAG 6 cut(s) 225, 278, 330, 891, 1164, 1499
MaeII ACGT 2 cut(s) 168, 728
MaeIII GTNAC 4 cut(s) 627, 854, 1276, 1341
MflI RGATCY 2 cut(s) 1267, 1731
MlsI TGGCCA 1 cut(s) 1652
MluCI AATT 7 cut(s) 655, 1062, 1157, 1202, 1250, 1751, 2038
MluNI TGGCCA 1 cut(s) 1652
MlyI GAGTC 4 cut(s) 72, 277, 1901, 1961
MmeI TCCRAC 2 cut(s) 576, 711
MnlI CCTC 7 cut(s) 534, 1035, 1065, 1098, 1720, 1872, 1955
Mox20I TGGCCA 1 cut(s) 1652
Mph1103I ATGCAT 1 cut(s) 1448
MroI TCCGGA 1 cut(s) 1763
MroXI GAANNNNTTC 1 cut(s) 1811
MscI TGGCCA 1 cut(s) 1652
MseI TTAA 5 cut(s) 321, 576, 588, 1089, 1395
MslI CAYNNNNRTG 2 cut(s) 438, 468
Msp20I TGGCCA 1 cut(s) 1652
MspI CCGG 3 cut(s) 572, 1231, 1764
MspR9I CCNGG 1 cut(s) 1232
Mva1269I GAATGC 1 cut(s) 1759
MwoI GCNNNNNNNGC 3 cut(s) 1499, 1513, 1649
NciI CCSGG 1 cut(s) 1232
NheI GCTAGC 1 cut(s) 1163
NlaIV GGNNCC 2 cut(s) 906, 1715
NmeAIII GCCGAG 1 cut(s) 1355
NmuCI GTSAC 1 cut(s) 1276
NsiI ATGCAT 1 cut(s) 1448
NspI RCATGY 3 cut(s) 1310, 1446, 1450
PaeI GCATGC 2 cut(s) 1310, 1450
PagI TCATGA 2 cut(s) 469, 1038
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 253
PctI GAATGC 1 cut(s) 1759
PdmI GAANNNNTTC 1 cut(s) 1811
PkrI GCNGC 5 cut(s) 921, 984, 1312, 1489, 1492
Ple19I CGATCG 1 cut(s) 2014
PleI GAGTC 4 cut(s) 72, 276, 1901, 1960
PpsI GAGTC 4 cut(s) 72, 276, 1901, 1960
Ppu21I YACGTR 1 cut(s) 169
PspEI GGTNACC 1 cut(s) 1341
PspN4I GGNNCC 2 cut(s) 906, 1715
PspPI GGNCC 1 cut(s) 1658
PsrI GAACNNNNNNTAC 2 cut(s) 1986, 2018
PsuI RGATCY 2 cut(s) 1267, 1731
PvuI CGATCG 1 cut(s) 2014
RsaI GTAC 5 cut(s) 217, 793, 906, 1671, 1794
RsaNI GTAC 5 cut(s) 216, 792, 905, 1670, 1793
RseI CAYNNNNRTG 2 cut(s) 438, 468
SaqAI TTAA 5 cut(s) 321, 576, 588, 1089, 1395
SatI GCNGC 5 cut(s) 920, 983, 1311, 1488, 1491
Sau96I GGNCC 1 cut(s) 1658
SchI GAGTC 4 cut(s) 72, 277, 1901, 1961
ScrFI CCNGG 1 cut(s) 1232
SfaNI GCATC 6 cut(s) 361, 685, 951, 1084, 1343, 1362
SfcI CTRYAG 3 cut(s) 261, 1404, 1872
SinI GGWCC 1 cut(s) 1658
SmiMI CAYNNNNRTG 2 cut(s) 438, 468
SmlI CTYRAG 1 cut(s) 740
SmoI CTYRAG 1 cut(s) 740
SnaBI TACGTA 1 cut(s) 169
SpeI ACTAGT 1 cut(s) 890
SphI GCATGC 2 cut(s) 1310, 1450
Sse9I AATT 7 cut(s) 655, 1062, 1157, 1202, 1250, 1751, 2038
SsiI CCGC 3 cut(s) 563, 715, 1310
SspI AATATT 1 cut(s) 823
SspMI CTAG 6 cut(s) 225, 278, 330, 891, 1164, 1499
StyD4I CCNGG 1 cut(s) 1230
StyI CCWWGG 1 cut(s) 329
TaaI ACNGT 6 cut(s) 154, 215, 450, 633, 1801, 1830
TaiI ACGT 2 cut(s) 171, 731
TaqI TCGA 7 cut(s) 81, 117, 242, 557, 885, 1972, 2010
TaqII GACCGA 1 cut(s) 888
TasI AATT 7 cut(s) 655, 1062, 1157, 1202, 1250, 1751, 2038
TatI WGTACW 2 cut(s) 215, 791
TauI GCSGC 1 cut(s) 1313
Tru1I TTAA 5 cut(s) 321, 576, 588, 1089, 1395
Tru9I TTAA 5 cut(s) 321, 576, 588, 1089, 1395
TscAI CASTG 1 cut(s) 1268
TseFI GTSAC 1 cut(s) 1276
TseI GCWGC 4 cut(s) 919, 982, 1487, 1490
Tsp45I GTSAC 1 cut(s) 1276
TspDTI ATGAA 7 cut(s) 210, 452, 1027, 1212, 1263, 1654, 1913
TspGWI ACGGA 1 cut(s) 1085
TspRI CASTG 1 cut(s) 1268
VpaK11BI GGWCC 1 cut(s) 1658
XapI RAATTY 4 cut(s) 655, 1202, 1250, 1751
XceI RCATGY 3 cut(s) 1310, 1446, 1450
XmaJI CCTAGG 1 cut(s) 329
XmnI GAANNNNTTC 1 cut(s) 1811
XspI CTAG 6 cut(s) 225, 278, 330, 891, 1164, 1499
Zsp2I ATGCAT 1 cut(s) 1448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.