Rw2G042690

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0007860
Physical Location & Seq
Forward (+)
69020501 .. 69024480
3980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G042690.1

Sequence Viewer

Length: 1479 bp
ATGAAGCCATCAAATAACATATGGATTCGGCGCCAACAGTGCCCATGTGGAGATTGGAAGTGTTATATTAAGTATGAAGGAGATGATCCGACCTCAGTAAGCTCTCTGCATGTAAAGAGTGAGATAACTTCATCCTCGTCCTCATCAGAAGCTGTCTTCACCCCTTATGTTGGTCAAATTTTCAAAACTGATGATGATGCTTTTGAATACTACAGCAATTTTGCACGGAAGAATGGATTTTCTATTAGAAAGGCACGCTCAACAGAAAGCCAAAACTTGGGGATATATAGACGAGATTTTGTTTGTTATCGGTCAGGATTTAATCAACCAAGAAAAAAGGCCAATGTGGAGCATCCCAGGGAGAGAAAATCAGTACGATGTGGATGTGATGCCAAGTTGTATTTGACAAAGGAAATTGTTGATGGCATTAGTCAATGGTATGTTTCACAGTTTAGTAACGTGCATAATCATGAGTTGTTGGAAGATGACCAAGTGCGCCTACTTCCTGCATATCGTAAAATACAAGAGGCAGATCAAGAACGGATTCTCTTACTTTCCAAAGCTGGCTTTCCTGTAAACCGCATAGTGAAAGTGTTGGAGCTAGAGAAGGGAGTTCAACCTGGACACTTGCCCTTCATAGAGAAAGATATCAGGAATTTTATTCGAACTTGTAAGAAAACTGTTCAAGACAATGATGCTTTGCTCAATGAGAAAAGAGAGAACGATATGCTAGAACTTCTTGAGGCCTGCAAGGCTATGACAGAGAGAGATCCAGGTTTTGTTTATGATTATACCATAGATGAAAATGAAAAGGTTGAAAACATTGCATGGTCATATGGTCACTCCGTTCGTGCATATACTGTTTTTGGTGATGTAGTTGCTTTTGACACTACCTACCGTTCTATCACATATGGATTGCTCCTTGGAGTGTGGTTTGGCATTGATAATCATGGCAGGGCAACTTTTTTAGGCTGTGTGCTGCTACATGATGAAAGTTCGCATTCATTTGCTTGGGCTCTGCAGGCTTTTATGCGATTTATGAGAGGAAGATATCCGCAGACTATTCTAACCGATATAGACTCGGGGCTTAGAGATGCTATAGCAAGGGAGTTGCCCAGTACTAAACATGTTATATGTATATGGCATATTCTATCCAAAATTTCCAGTTGGTTCTCTTTGCCTCTTGGACCGCAGTATGAAAATTTTAAAGCTGAGTTTGATGTGTTGTCTCATCTGGAGAGTGTAGAAGACTTTGAACACCAATGGAACATTTTGGCTGCTCGGTATGGCCTTGTGTCCGATAAGCATATAGGTTTATTGTATTCATCTCGAGAATCCTGGTCACCTTCTTACATTAGAGGCTACTTTCTGGCTCGTACACTGACAGCTGAGTTTTCACTAGCTTTGGAGTCATTCTTGAAAAGAATTTTGAATGCACAGACATGTCTACAAGTATTCTTTGAGCAGGTATGTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

492

Amino Acids

56.87

Weight (kDa)

6.55

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 69 - 160 1.2e-24 FAR1 DNA-binding domain
HTH_FAR1 PF26175 173 - 227 3.3e-26 FAR1 HTH-like domain
ZSWIM1-3_RNaseH-like PF21056 253 - 375 1e-09 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 292 - 385 1.5e-21 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1477
Acc36I ACCTGC 1 cut(s) 1456
AccB1I GGYRCC 1 cut(s) 30
AccB7I CCANNNNNTGG 1 cut(s) 277
AccI GTMKAC 1 cut(s) 1447
AciI CCGC 3 cut(s) 580, 1055, 1190
AclWI GGATC 2 cut(s) 80, 764
AcsI RAATTY 5 cut(s) 177, 655, 1158, 1201, 1425
AcyI GRCGYC 1 cut(s) 31
AfaI GTAC 3 cut(s) 375, 1120, 1378
AfiI CCNNNNNNNGG 2 cut(s) 170, 277
AflIII ACRYGT 2 cut(s) 1126, 1442
AgsI TTSAA 8 cut(s) 184, 206, 617, 686, 818, 1256, 1420, 1432
AjnI CCWGG 4 cut(s) 356, 619, 772, 1337
AluBI AGCT 7 cut(s) 102, 152, 563, 601, 1211, 1388, 1403
AluI AGCT 7 cut(s) 102, 152, 563, 601, 1211, 1388, 1403
Alw26I GTCTC 1 cut(s) 1233
AlwI GGATC 2 cut(s) 80, 764
AlwNI CAGNNNCTG 1 cut(s) 152
Ama87I CYCGRG 2 cut(s) 1081, 1329
AoxI GGCC 3 cut(s) 339, 744, 1288
ApeKI GCWGC 2 cut(s) 979, 1277
ApoI RAATTY 5 cut(s) 177, 655, 1158, 1201, 1425
Asp700I GAANNNNTTC 1 cut(s) 543
AspLEI GCGC 2 cut(s) 33, 498
AspS9I GGNCC 1 cut(s) 1187
AsuHPI GGTGA 3 cut(s) 151, 881, 1335
AsuII TTCGAA 1 cut(s) 664
AvaI CYCGRG 2 cut(s) 1081, 1329
AvaII GGWCC 1 cut(s) 1187
BaeGI GKGCMC 1 cut(s) 44
BanI GGYRCC 1 cut(s) 30
BanII GRGCYC 1 cut(s) 1018
BbsI GAAGAC 2 cut(s) 148, 1254
BbvI GCAGC 2 cut(s) 966, 1264
BccI CCATC 2 cut(s) 16, 416
BciT130I CCWGG 4 cut(s) 358, 621, 774, 1339
BcoDI GTCTC 1 cut(s) 1233
BfaI CTAG 3 cut(s) 602, 731, 1400
BfmI CTRYAG 3 cut(s) 211, 1019, 1098
BfoI RGCGCY 1 cut(s) 34
BfuAI ACCTGC 1 cut(s) 1456
BglI GCCNNNNNGGC 1 cut(s) 752
BisI GCNGC 2 cut(s) 980, 1278
BlsI GCNGC 2 cut(s) 981, 1279
BmcAI AGTACT 1 cut(s) 1120
Bme1390I CCNGG 4 cut(s) 358, 621, 774, 1339
Bme18I GGWCC 1 cut(s) 1187
BmeT110I CYCGRG 2 cut(s) 1081, 1329
BmgT120I GGNCC 1 cut(s) 1187
BmiI GGNNCC 1 cut(s) 32
BmrFI CCNGG 4 cut(s) 358, 621, 774, 1339
BmrI ACTGGG 1 cut(s) 1110
BmsI GCATC 5 cut(s) 187, 361, 379, 685, 1084
BmuI ACTGGG 1 cut(s) 1110
BpiI GAAGAC 2 cut(s) 148, 1254
BpmI CTGGAG 1 cut(s) 1256
Bpu14I TTCGAA 1 cut(s) 664
BpuEI CTTGAG 1 cut(s) 761
BsaHI GRCGYC 1 cut(s) 31
BsaJI CCNNGG 3 cut(s) 356, 357, 922
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 277
Bse1I ACTGG 2 cut(s) 1116, 1164
Bse3DI GCAATG 1 cut(s) 822
BseBI CCWGG 4 cut(s) 358, 621, 774, 1339
BseDI CCNNGG 3 cut(s) 356, 357, 922
BseGI GGATG 3 cut(s) 131, 352, 389
BseLI CCNNNNNNNGG 2 cut(s) 170, 277
BseMI GCAATG 1 cut(s) 822
BseMII CTCAG 3 cut(s) 108, 1203, 1380
BseNI ACTGG 2 cut(s) 1116, 1164
BseSI GKGCMC 1 cut(s) 44
BseXI GCAGC 2 cut(s) 966, 1264
BshFI GGCC 3 cut(s) 341, 746, 1290
BshNI GGYRCC 1 cut(s) 30
BsiHKCI CYCGRG 2 cut(s) 1081, 1329
BslI CCNNNNNNNGG 2 cut(s) 170, 277
BsmAI GTCTC 1 cut(s) 1233
BsmI GAATGC 2 cut(s) 1000, 1438
BsnI GGCC 3 cut(s) 341, 746, 1290
BsoBI CYCGRG 2 cut(s) 1081, 1329
Bsp119I TTCGAA 1 cut(s) 664
Bsp1286I GDGCHC 2 cut(s) 44, 1018
Bsp143I GATC 3 cut(s) 85, 532, 769
BspACI CCGC 3 cut(s) 580, 1055, 1190
BspANI GGCC 3 cut(s) 341, 746, 1290
BspCNI CTCAG 3 cut(s) 107, 1204, 1381
BspHI TCATGA 1 cut(s) 469
BspLI GGNNCC 1 cut(s) 32
BspMAI CTGCAG 1 cut(s) 1023
BspMI ACCTGC 1 cut(s) 1456
BspPI GGATC 2 cut(s) 80, 764
BspT104I TTCGAA 1 cut(s) 664
BspT107I GGYRCC 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 822
BsrI ACTGG 2 cut(s) 1116, 1164
BssECI CCNNGG 3 cut(s) 356, 357, 922
BssMI GATC 3 cut(s) 85, 532, 769
BssNI GRCGYC 1 cut(s) 31
BssT1I CCWWGG 1 cut(s) 922
Bst2UI CCWGG 4 cut(s) 358, 621, 774, 1339
Bst4CI ACNGT 5 cut(s) 39, 450, 682, 862, 899
BstACI GRCGYC 1 cut(s) 31
BstBI TTCGAA 1 cut(s) 664
BstC8I GCNNGC 4 cut(s) 256, 565, 748, 1023
BstDEI CTNAG 4 cut(s) 94, 1088, 1212, 1389
BstEII GGTNACC 1 cut(s) 1341
BstF5I GGATG 3 cut(s) 131, 352, 389
BstH2I RGCGCY 1 cut(s) 34
BstHHI GCGC 2 cut(s) 33, 498
BstKTI GATC 3 cut(s) 88, 535, 772
BstMAI GTCTC 1 cut(s) 1233
BstMBI GATC 3 cut(s) 85, 532, 769
BstMWI GCNNNNNNNGC 3 cut(s) 39, 752, 1022
BstNI CCWGG 4 cut(s) 358, 621, 774, 1339
BstNSI RCATGY 3 cut(s) 113, 1130, 1446
BstPI GGTNACC 1 cut(s) 1341
BstSCI CCNGG 4 cut(s) 356, 619, 772, 1337
BstSFI CTRYAG 3 cut(s) 211, 1019, 1098
BstSLI GKGCMC 1 cut(s) 44
BstV1I GCAGC 2 cut(s) 966, 1264
BstV2I GAAGAC 2 cut(s) 148, 1254
BstX2I RGATCY 1 cut(s) 769
BstYI RGATCY 1 cut(s) 769
BsuRI GGCC 3 cut(s) 341, 746, 1290
BtsCI GGATG 3 cut(s) 131, 352, 389
BtsIMutI CAGTG 2 cut(s) 44, 1379
BveI ACCTGC 1 cut(s) 1456
Cac8I GCNNGC 4 cut(s) 256, 565, 748, 1023
CaiI CAGNNNCTG 1 cut(s) 152
CciI TCATGA 1 cut(s) 469
CfoI GCGC 2 cut(s) 33, 498
Cfr13I GGNCC 1 cut(s) 1187
Csp6I GTAC 3 cut(s) 374, 1119, 1377
CviAII CATG 8 cut(s) 45, 110, 470, 828, 950, 986, 1127, 1443
CviQI GTAC 3 cut(s) 374, 1119, 1377
DdeI CTNAG 4 cut(s) 94, 1088, 1212, 1389
DinI GGCGCC 1 cut(s) 32
DpnI GATC 3 cut(s) 87, 534, 771
DpnII GATC 3 cut(s) 85, 532, 769
DraI TTTAAA 1 cut(s) 1207
Eco130I CCWWGG 1 cut(s) 922
Eco147I AGGCCT 1 cut(s) 746
Eco24I GRGCYC 1 cut(s) 1018
Eco32I GATATC 2 cut(s) 649, 1052
Eco47I GGWCC 1 cut(s) 1187
Eco88I CYCGRG 2 cut(s) 1081, 1329
Eco91I GGTNACC 1 cut(s) 1341
EcoO65I GGTNACC 1 cut(s) 1341
EcoRII CCWGG 4 cut(s) 356, 619, 772, 1337
EcoRV GATATC 2 cut(s) 649, 1052
EcoT14I CCWWGG 1 cut(s) 922
EcoT38I GRGCYC 1 cut(s) 1018
EgeI GGCGCC 1 cut(s) 32
EheI GGCGCC 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 922
FaeI CATG 8 cut(s) 48, 113, 473, 831, 953, 989, 1130, 1446
FatI CATG 8 cut(s) 44, 109, 469, 827, 949, 985, 1126, 1442
FauNDI CATATG 3 cut(s) 20, 835, 910
FblI GTMKAC 1 cut(s) 1447
Fnu4HI GCNGC 2 cut(s) 980, 1278
FokI GGATG 3 cut(s) 118, 339, 396
FriOI GRGCYC 1 cut(s) 1018
Fsp4HI GCNGC 2 cut(s) 980, 1278
FspBI CTAG 3 cut(s) 602, 731, 1400
GlaI GCGC 2 cut(s) 32, 497
GluI GCNGC 2 cut(s) 980, 1278
GsuI CTGGAG 1 cut(s) 1256
HaeII RGCGCY 1 cut(s) 34
HaeIII GGCC 3 cut(s) 341, 746, 1290
HhaI GCGC 2 cut(s) 33, 498
Hin1I GRCGYC 1 cut(s) 31
Hin1II CATG 8 cut(s) 48, 113, 473, 831, 953, 989, 1130, 1446
Hin6I GCGC 2 cut(s) 31, 496
HinP1I GCGC 2 cut(s) 31, 496
HinfI GANTC 5 cut(s) 25, 544, 1079, 1334, 1409
HphI GGTGA 3 cut(s) 151, 881, 1335
Hpy166II GTNNAC 3 cut(s) 577, 1379, 1448
Hpy188I TCNGA 3 cut(s) 90, 148, 1300
Hpy8I GTNNAC 3 cut(s) 577, 1379, 1448
HpyAV CCTTC 4 cut(s) 71, 601, 643, 1356
HpyCH4III ACNGT 5 cut(s) 39, 450, 682, 862, 899
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 9 cut(s) 109, 224, 463, 509, 750, 827, 854, 1021, 1436
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 752, 1022
HpyF3I CTNAG 4 cut(s) 94, 1088, 1212, 1389
HpySE526I ACGT 1 cut(s) 459
Hsp92I GRCGYC 1 cut(s) 31
Hsp92II CATG 8 cut(s) 48, 113, 473, 831, 953, 989, 1130, 1446
HspAI GCGC 2 cut(s) 31, 496
KasI GGCGCC 1 cut(s) 30
Kzo9I GATC 3 cut(s) 85, 532, 769
LmnI GCTCC 3 cut(s) 349, 598, 924
Lsp1109I GCAGC 2 cut(s) 966, 1264
LweI GCATC 5 cut(s) 187, 361, 379, 685, 1084
MaeI CTAG 3 cut(s) 602, 731, 1400
MaeII ACGT 1 cut(s) 459
MaeIII GTNAC 3 cut(s) 455, 839, 1341
MalI GATC 3 cut(s) 87, 534, 771
MboI GATC 3 cut(s) 85, 532, 769
MboII GAAGA 5 cut(s) 148, 241, 494, 1059, 1259
MflI RGATCY 1 cut(s) 769
MhlI GDGCHC 2 cut(s) 44, 1018
MluCI AATT 7 cut(s) 177, 217, 414, 655, 1158, 1201, 1425
Mly113I GGCGCC 1 cut(s) 31
MlyI GAGTC 2 cut(s) 1073, 1418
MmeI TCCRAC 3 cut(s) 113, 459, 576
MnlI CCTC 8 cut(s) 103, 145, 151, 520, 736, 1037, 1191, 1352
MroXI GAANNNNTTC 1 cut(s) 543
MseI TTAA 3 cut(s) 69, 321, 1206
MslI CAYNNNNRTG 2 cut(s) 468, 1441
MspA1I CMGCKG 1 cut(s) 1388
MspR9I CCNGG 4 cut(s) 358, 621, 774, 1339
Mva1269I GAATGC 2 cut(s) 1000, 1438
MvaI CCWGG 4 cut(s) 358, 621, 774, 1339
MwoI GCNNNNNNNGC 3 cut(s) 39, 752, 1022
NarI GGCGCC 1 cut(s) 31
NdeI CATATG 3 cut(s) 20, 835, 910
NdeII GATC 3 cut(s) 85, 532, 769
NlaIII CATG 8 cut(s) 48, 113, 473, 831, 953, 989, 1130, 1446
NlaIV GGNNCC 1 cut(s) 32
NmuCI GTSAC 2 cut(s) 839, 1341
NspI RCATGY 3 cut(s) 113, 1130, 1446
NspV TTCGAA 1 cut(s) 664
PaeR7I CTCGAG 1 cut(s) 1329
PagI TCATGA 1 cut(s) 469
PasI CCCWGGG 1 cut(s) 357
PceI AGGCCT 1 cut(s) 746
PciI ACATGT 2 cut(s) 1126, 1442
PctI GAATGC 2 cut(s) 1000, 1438
PdmI GAANNNNTTC 1 cut(s) 543
PfeI GAWTC 3 cut(s) 25, 544, 1334
PflMI CCANNNNNTGG 1 cut(s) 277
PkrI GCNGC 2 cut(s) 981, 1279
PleI GAGTC 2 cut(s) 1073, 1417
PluTI GGCGCC 1 cut(s) 34
PpsI GAGTC 2 cut(s) 1073, 1417
PscI ACATGT 2 cut(s) 1126, 1442
PsiI TTATAA 1 cut(s) 1477
Psp6I CCWGG 4 cut(s) 356, 619, 772, 1337
PspEI GGTNACC 1 cut(s) 1341
PspGI CCWGG 4 cut(s) 356, 619, 772, 1337
PspN4I GGNNCC 1 cut(s) 32
PspPI GGNCC 1 cut(s) 1187
PstI CTGCAG 1 cut(s) 1023
PstNI CAGNNNCTG 1 cut(s) 152
PsuI RGATCY 1 cut(s) 769
PvuII CAGCTG 1 cut(s) 1388
RsaI GTAC 3 cut(s) 375, 1120, 1378
RsaNI GTAC 3 cut(s) 374, 1119, 1377
RseI CAYNNNNRTG 2 cut(s) 468, 1441
SaqAI TTAA 3 cut(s) 69, 321, 1206
SatI GCNGC 2 cut(s) 980, 1278
Sau3AI GATC 3 cut(s) 85, 532, 769
Sau96I GGNCC 1 cut(s) 1187
ScaI AGTACT 1 cut(s) 1120
SchI GAGTC 2 cut(s) 1073, 1418
ScrFI CCNGG 4 cut(s) 358, 621, 774, 1339
SduI GDGCHC 2 cut(s) 44, 1018
SfaNI GCATC 5 cut(s) 187, 361, 379, 685, 1084
SfcI CTRYAG 3 cut(s) 211, 1019, 1098
SfoI GGCGCC 1 cut(s) 32
Sfr274I CTCGAG 1 cut(s) 1329
SfuI TTCGAA 1 cut(s) 664
SinI GGWCC 1 cut(s) 1187
SlaI CTCGAG 1 cut(s) 1329
SmiMI CAYNNNNRTG 2 cut(s) 468, 1441
SmlI CTYRAG 2 cut(s) 740, 1329
SmoI CTYRAG 2 cut(s) 740, 1329
Sse9I AATT 7 cut(s) 177, 217, 414, 655, 1158, 1201, 1425
SseBI AGGCCT 1 cut(s) 746
SsiI CCGC 3 cut(s) 580, 1055, 1190
SspDI GGCGCC 1 cut(s) 30
SspMI CTAG 3 cut(s) 602, 731, 1400
StuI AGGCCT 1 cut(s) 746
StyD4I CCNGG 4 cut(s) 356, 619, 772, 1337
StyI CCWWGG 1 cut(s) 922
TaaI ACNGT 5 cut(s) 39, 450, 682, 862, 899
TaiI ACGT 1 cut(s) 462
TaqI TCGA 2 cut(s) 664, 1330
TaqII GACCGA 1 cut(s) 300
TasI AATT 7 cut(s) 177, 217, 414, 655, 1158, 1201, 1425
TatI WGTACW 1 cut(s) 1118
TfiI GAWTC 3 cut(s) 25, 544, 1334
Tru1I TTAA 3 cut(s) 69, 321, 1206
Tru9I TTAA 3 cut(s) 69, 321, 1206
TscAI CASTG 2 cut(s) 44, 1386
TseFI GTSAC 2 cut(s) 839, 1341
TseI GCWGC 2 cut(s) 979, 1277
Tsp45I GTSAC 2 cut(s) 839, 1341
TspGWI ACGGA 3 cut(s) 241, 556, 835
TspRI CASTG 2 cut(s) 44, 1386
Van91I CCANNNNNTGG 1 cut(s) 277
VpaK11BI GGWCC 1 cut(s) 1187
XapI RAATTY 5 cut(s) 177, 655, 1158, 1201, 1425
XceI RCATGY 3 cut(s) 113, 1130, 1446
XcmI CCANNNNNNNNNTGG 1 cut(s) 51
XhoI CTCGAG 1 cut(s) 1329
XmiI GTMKAC 1 cut(s) 1447
XmnI GAANNNNTTC 1 cut(s) 543
XspI CTAG 3 cut(s) 602, 731, 1400
ZrmI AGTACT 1 cut(s) 1120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.