AT5G35700

Calponin homology domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
13872479 .. 13876876
4398 bp
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UTR
Exon/CDS
Intron
AT5G35700.1

Sequence Viewer

Length: 2064 bp
ATGTCTAGTTACGTTGGTGTTCTTGTCTCTGATCCTTGGTTACAGAGCCAATTTACACAAGTGGAATTGCGTACCCTTAAATCTAAGTTTGTTTCGAACAAAACTCAATTAGGACGTTTCACTGTCGGAGATTTACCACCTGTTTTCGAAAAGTTGAAAGCTTTTAACGGTACCATTGATGAGGATGAGATCAAATCTGTATTGGACAAGTCTTATCCCAATGCTGATGATGAAGTCGATTTTGAGTTCTTTCTTCGGGCCTTTTTAAGTGTGCAAGCACGAGGAGTTGAGAAATCAGGAGGGTCAAAAGGTGCTTCTTCATTCCTCAAAACCAGTACTACAACGGTGCACCATGCGATCAATGAATCCGAGAAGGCTTCTTATGTTTCGCATGTTAATAATTACTTGAGAGATGATCCTTTCTTGAAGAGCTATCTTCCTATTGATCCCGCAACAAATGCTTTCTTTGATCTTGTTAAAGATGGTGTTCTTTTGTGTAAGCTTATAAATGTTGCTGTTCCTGGGACCATCGACGAACGAGCTATCAACACAAAGAAAACGCTTAACCCATGGGAGAGGAATGAGAACCTTACTTTAGGTCTCAATTCTGCCAAAGCTATTGGCTGCACAGTGGTCAACATTGGAACACAGGACATAGCTGAAGGAAGACCATATCTCGTACTTGGGTTGATATCTCAGATTATAAAGATCCAAATGTTGGCTGATCTCAATTTTAAGAAAACTCCTTCGCTTTTTCAACTGGTGGACGACACTCAGGATGCAGAGGAGCTCATGGGATTGGCTCCTGAAAAAGTTTTGCTAAAATGGATGAATTTCCATCTGAAGAAAGCTGGTTATGAAAAGCAGGTTACGAATTTTTCTTCTGATTTGAAGGACGGTGAGGCATATGCGTACCTGCTTAATGCCCTTGCTCCAGAACACAGTACACATGTGGCATTAGAGACCAAAGACCCCACAGAAAGAGCGAAAAAGGTTCTTGAGCAGGCTGAGAAGCTGGATTGTAAACGATACCTTTCTCCCAAAGACATAGTGGACGGCTCAGCAAATCTTAACCTTGCATTTGTGGCGCAAATATTTCAGCACAGGAATGGATTGACTGTTGACGATTCAAAGACATCATTTGCTGAGATGATGACAGATGATGTGGAAACTTCACGAGAAGAAAGATGTTTCCGCCTCTGGATTAACAGTCTTGGCACAGCCACTTATGTCAATAATGTTTTTGAGGATCTTAGGAATGGGTGGGTTCTTCTTGAAGTTCTCGACAAAGTTTCACCTGGCTCGGTCAACTGGAAACACGCAAATAAACCTCCCATAAAAATGCCATTCAAAAAGGTTGAGAACTGCAATGAAGTTATAAAGATTGGGAAGGAACTGCGCTTTTCCCTTGTCAATGTAGCTGGGAATGACATTGTGCAAGGAAATAAGAAACTTCTTCTCGCATTTTTGTGGCAACTAATGAGATATACAATGCTCCAACTTCTGAGGAACTTGAGATCACACTCGCAAGGTAAAGAAATTACAGATGCAGATATTCTTAACTGGGCGAATAGGAAAGTGAAGAGAGGTGGCCGAACTAGTCAGGCTGATAGCTTCAGGGACAAGAATCTGTCTAGTGGAATGTTCTTTCTGGAACTTCTTAGTGCGGTAGAGCCAAGAGTTGTCAACTGGAGCCTCGTTACCAATGGAGAAACAGAGGAGGATAAGAAGTTGAATGCCACATACATCATCAGTGTTGCACGAAAGCTTGGATGTTCCATATTCTTGTTGCCTGAAGATATCATAGAGGTGAACCAGAAGATGATGCTTATCTTGGCAGCCAGCATCATGTACTGGAGCCTCCAACAACAATCAGACACAGAGTCTACTGTCTCAGAAGACGCCACTGATGATGGCGACGCAAACTCTGTAGCGGGTGAAATCTCCAATTTGTCCATTGATGGAGCTTCCGAGTCCAGTCCCACTGTCCAAGATCAAGAATTGCTGACGAAGGCAGACAATGATGAGGATGAGGTTGATGGTGAGAATAATAAAGATGCATGA

Protein Analysis

687

Amino Acids

76.76

Weight (kDa)

5.13

Isoelectric Point (pI)

30.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CH PF00307 152 - 237 2.3e-15 Calponin homology (CH) domain
CH PF00307 268 - 369 2.7e-24 Calponin homology (CH) domain
CH PF00307 394 - 497 1.5e-18 Calponin homology (CH) domain
CH PF00307 516 - 618 3.1e-17 Calponin homology (CH) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 506, 704, 1379
Acc36I ACCTGC 2 cut(s) 856, 924
Acc65I GGTACC 1 cut(s) 170
AccB1I GGYRCC 1 cut(s) 170
AccB7I CCANNNNNTGG 1 cut(s) 718
AccI GTMKAC 1 cut(s) 1886
AciI CCGC 4 cut(s) 450, 1195, 1667, 1934
AclWI GGATC 5 cut(s) 26, 410, 440, 703, 1257
AcoI YGGCCR 1 cut(s) 1591
AcsI RAATTY 2 cut(s) 832, 874
AcuI CTGAAG 4 cut(s) 681, 863, 1600, 1815
AcyI GRCGYC 1 cut(s) 1902
AfaI GTAC 7 cut(s) 73, 172, 337, 681, 914, 946, 1853
AfiI CCNNNNNNNGG 1 cut(s) 718
AflIII ACRYGT 1 cut(s) 949
AgsI TTSAA 8 cut(s) 157, 427, 758, 892, 1131, 1277, 1351, 1735
AhdI GACNNNNNGTC 1 cut(s) 1882
AhlI ACTAGT 1 cut(s) 1598
AjnI CCWGG 2 cut(s) 520, 1297
Alw21I GWGCWC 2 cut(s) 351, 792
Alw26I GTCTC 4 cut(s) 31, 605, 956, 1897
Alw44I GTGCAC 1 cut(s) 347
AlwI GGATC 5 cut(s) 26, 410, 440, 703, 1257
AoxI GGCC 2 cut(s) 258, 1591
ApaLI GTGCAC 1 cut(s) 347
ApeKI GCWGC 2 cut(s) 624, 1838
ApoI RAATTY 2 cut(s) 832, 874
Asp718I GGTACC 1 cut(s) 170
AspLEI GCGC 2 cut(s) 1090, 1401
AspS9I GGNCC 2 cut(s) 258, 525
AsuHPI GGTGA 5 cut(s) 911, 1287, 1822, 1949, 2054
AsuII TTCGAA 2 cut(s) 95, 147
AvaII GGWCC 1 cut(s) 525
BaeGI GKGCMC 1 cut(s) 351
BanI GGYRCC 1 cut(s) 170
BanII GRGCYC 1 cut(s) 792
BauI CACGAG 2 cut(s) 279, 1176
BbsI GAAGAC 2 cut(s) 673, 1905
Bbv12I GWGCWC 2 cut(s) 351, 792
BbvI GCAGC 2 cut(s) 611, 1850
BccI CCATC 6 cut(s) 476, 536, 846, 1907, 1955, 2033
BceAI ACGGC 1 cut(s) 1072
BciT130I CCWGG 2 cut(s) 522, 1299
BcoDI GTCTC 4 cut(s) 31, 605, 956, 1897
BcuI ACTAGT 1 cut(s) 1598
BfaI CTAG 3 cut(s) 6, 1599, 1635
BfmI CTRYAG 1 cut(s) 1929
BfuAI ACCTGC 2 cut(s) 856, 924
BisI GCNGC 2 cut(s) 625, 1839
BlpI GCTNAGC 1 cut(s) 1060
BlsI GCNGC 2 cut(s) 626, 1840
BmcAI AGTACT 1 cut(s) 337
Bme1390I CCNGG 2 cut(s) 522, 1299
Bme18I GGWCC 1 cut(s) 525
BmeRI GACNNNNNGTC 1 cut(s) 1882
BmgT120I GGNCC 2 cut(s) 258, 525
BmiI GGNNCC 5 cut(s) 172, 526, 804, 1694, 1859
BmrFI CCNGG 2 cut(s) 522, 1299
BmrI ACTGGG 1 cut(s) 1573
BmsI GCATC 5 cut(s) 769, 1537, 1815, 1854, 2047
BmuI ACTGGG 1 cut(s) 1573
BpiI GAAGAC 2 cut(s) 673, 1905
BpmI CTGGAG 3 cut(s) 918, 1711, 1876
Bpu1102I GCTNAGC 1 cut(s) 1060
Bpu14I TTCGAA 2 cut(s) 95, 147
BpuEI CTTGAG 3 cut(s) 427, 1019, 1534
BsaBI GATNNNNATC 1 cut(s) 1829
BsaHI GRCGYC 1 cut(s) 1902
BsaI GGTCTC 2 cut(s) 605, 956
BsaJI CCNNGG 3 cut(s) 35, 521, 569
Bsc4I CCNNNNNNNGG 1 cut(s) 718
Bse1I ACTGG 7 cut(s) 333, 765, 1316, 1568, 1694, 1859, 1977
Bse3DI GCAATG 1 cut(s) 1375
Bse8I GATNNNNATC 1 cut(s) 1829
BseBI CCWGG 2 cut(s) 522, 1299
BseDI CCNNGG 3 cut(s) 35, 521, 569
BseGI GGATG 5 cut(s) 190, 784, 834, 1778, 2035
BseJI GATNNNNATC 1 cut(s) 1829
BseLI CCNNNNNNNGG 1 cut(s) 718
BseMI GCAATG 1 cut(s) 1375
BseMII CTCAG 7 cut(s) 710, 788, 999, 1074, 1137, 1496, 1908
BseNI ACTGG 7 cut(s) 333, 765, 1316, 1568, 1694, 1859, 1977
BseRI GAGGAG 3 cut(s) 297, 800, 1733
BseSI GKGCMC 1 cut(s) 351
BseXI GCAGC 2 cut(s) 611, 1850
BseYI CCCAGC 1 cut(s) 1421
BsgI GTGCAG 1 cut(s) 610
BshFI GGCC 2 cut(s) 260, 1593
BshNI GGYRCC 1 cut(s) 170
BsiHKAI GWGCWC 2 cut(s) 351, 792
BslFI GGGAC 3 cut(s) 538, 1634, 1965
BslI CCNNNNNNNGG 1 cut(s) 718
BsmAI GTCTC 4 cut(s) 31, 605, 956, 1897
BsmFI GGGAC 3 cut(s) 538, 1634, 1965
BsmI GAATGC 1 cut(s) 1741
BsnI GGCC 2 cut(s) 260, 1593
Bso31I GGTCTC 2 cut(s) 605, 956
Bsp119I TTCGAA 2 cut(s) 95, 147
Bsp1286I GDGCHC 2 cut(s) 351, 792
Bsp1720I GCTNAGC 1 cut(s) 1060
Bsp19I CCATGG 1 cut(s) 569
BspACI CCGC 4 cut(s) 450, 1195, 1667, 1934
BspANI GGCC 2 cut(s) 260, 1593
BspCNI CTCAG 7 cut(s) 709, 787, 1000, 1073, 1138, 1497, 1907
BspLI GGNNCC 5 cut(s) 172, 526, 804, 1694, 1859
BspMI ACCTGC 2 cut(s) 856, 924
BspPI GGATC 5 cut(s) 26, 410, 440, 703, 1257
BspQI GCTCTTC 1 cut(s) 422
BspT104I TTCGAA 2 cut(s) 95, 147
BspT107I GGYRCC 1 cut(s) 170
BspTNI GGTCTC 2 cut(s) 605, 956
BsrDI GCAATG 1 cut(s) 1375
BsrI ACTGG 7 cut(s) 333, 765, 1316, 1568, 1694, 1859, 1977
BssECI CCNNGG 3 cut(s) 35, 521, 569
BssNI GRCGYC 1 cut(s) 1902
BssSI CACGAG 2 cut(s) 279, 1176
BssT1I CCWWGG 2 cut(s) 35, 569
Bst2BI CACGAG 2 cut(s) 279, 1176
Bst2UI CCWGG 2 cut(s) 522, 1299
Bst6I CTCTTC 2 cut(s) 422, 1577
BstACI GRCGYC 1 cut(s) 1902
BstAPI GCANNNNNTGC 1 cut(s) 458
BstBI TTCGAA 2 cut(s) 95, 147
BstC8I GCNNGC 3 cut(s) 276, 1005, 1843
BstDSI CCRYGG 1 cut(s) 569
BstF5I GGATG 5 cut(s) 190, 784, 834, 1778, 2035
BstHHI GCGC 2 cut(s) 1090, 1401
BstMAI GTCTC 4 cut(s) 31, 605, 956, 1897
BstMWI GCNNNNNNNGC 2 cut(s) 458, 1085
BstNI CCWGG 2 cut(s) 522, 1299
BstNSI RCATGY 2 cut(s) 395, 953
BstSCI CCNGG 2 cut(s) 520, 1297
BstSFI CTRYAG 1 cut(s) 1929
BstSLI GKGCMC 1 cut(s) 351
BstV1I GCAGC 2 cut(s) 611, 1850
BstV2I GAAGAC 2 cut(s) 673, 1905
BstX2I RGATCY 2 cut(s) 708, 1249
BstYI RGATCY 2 cut(s) 708, 1249
BsuRI GGCC 2 cut(s) 260, 1593
BtgI CCRYGG 1 cut(s) 569
BtsCI GGATG 5 cut(s) 190, 784, 834, 1778, 2035
BtsIMutI CAGTG 5 cut(s) 120, 636, 1759, 1905, 1983
BveI ACCTGC 2 cut(s) 856, 924
Cac8I GCNNGC 3 cut(s) 276, 1005, 1843
CfoI GCGC 2 cut(s) 1090, 1401
Cfr13I GGNCC 2 cut(s) 258, 525
CseI GACGC 2 cut(s) 1910, 1928
Csp6I GTAC 7 cut(s) 72, 171, 336, 680, 913, 945, 1852
CviAII CATG 7 cut(s) 353, 392, 570, 793, 950, 1849, 2061
CviQI GTAC 7 cut(s) 72, 171, 336, 680, 913, 945, 1852
DriI GACNNNNNGTC 1 cut(s) 1882
EaeI YGGCCR 1 cut(s) 1591
Eam1104I CTCTTC 2 cut(s) 422, 1577
Eam1105I GACNNNNNGTC 1 cut(s) 1882
EarI CTCTTC 2 cut(s) 422, 1577
EciI GGCGGA 1 cut(s) 1184
Ecl136II GAGCTC 1 cut(s) 790
Eco130I CCWWGG 2 cut(s) 35, 569
Eco24I GRGCYC 1 cut(s) 792
Eco31I GGTCTC 2 cut(s) 605, 956
Eco32I GATATC 2 cut(s) 693, 1801
Eco47I GGWCC 1 cut(s) 525
Eco53kI GAGCTC 1 cut(s) 790
Eco57I CTGAAG 4 cut(s) 681, 863, 1600, 1815
EcoICRI GAGCTC 1 cut(s) 790
EcoRII CCWGG 2 cut(s) 520, 1297
EcoRV GATATC 2 cut(s) 693, 1801
EcoT14I CCWWGG 2 cut(s) 35, 569
EcoT22I ATGCAT 1 cut(s) 2062
EcoT38I GRGCYC 1 cut(s) 792
ErhI CCWWGG 2 cut(s) 35, 569
FaeI CATG 7 cut(s) 356, 395, 573, 796, 953, 1852, 2064
FaqI GGGAC 3 cut(s) 538, 1634, 1965
FatI CATG 7 cut(s) 352, 391, 569, 792, 949, 1848, 2060
FauI CCCGC 2 cut(s) 457, 1927
FauNDI CATATG 1 cut(s) 907
FblI GTMKAC 1 cut(s) 1886
Fnu4HI GCNGC 2 cut(s) 625, 1839
FokI GGATG 5 cut(s) 197, 791, 841, 1785, 2042
FriOI GRGCYC 1 cut(s) 792
Fsp4HI GCNGC 2 cut(s) 625, 1839
FspBI CTAG 3 cut(s) 6, 1599, 1635
GlaI GCGC 2 cut(s) 1089, 1400
GluI GCNGC 2 cut(s) 625, 1839
GsaI CCCAGC 1 cut(s) 1425
GsuI CTGGAG 3 cut(s) 918, 1711, 1876
HaeIII GGCC 2 cut(s) 260, 1593
HgaI GACGC 2 cut(s) 1910, 1928
HhaI GCGC 2 cut(s) 1090, 1401
Hin1I GRCGYC 1 cut(s) 1902
Hin1II CATG 7 cut(s) 356, 395, 573, 796, 953, 1852, 2064
Hin6I GCGC 2 cut(s) 1088, 1399
HinP1I GCGC 2 cut(s) 1088, 1399
HincII GTYRAC 4 cut(s) 637, 1123, 1309, 1687
HindII GTYRAC 4 cut(s) 637, 1123, 1309, 1687
HindIII AAGCTT 3 cut(s) 159, 500, 1766
HinfI GANTC 5 cut(s) 365, 1127, 1627, 1883, 1973
HphI GGTGA 5 cut(s) 911, 1287, 1822, 1949, 2054
Hpy99I CGWCG 2 cut(s) 536, 1922
HpyAV CCTTC 6 cut(s) 367, 656, 756, 886, 1384, 2005
HpyCH4IV ACGT 2 cut(s) 12, 115
HpyF10VI GCNNNNNNNGC 2 cut(s) 458, 1085
HpySE526I ACGT 2 cut(s) 12, 115
Hsp92I GRCGYC 1 cut(s) 1902
Hsp92II CATG 7 cut(s) 356, 395, 573, 796, 953, 1852, 2064
HspAI GCGC 2 cut(s) 1088, 1399
KpnI GGTACC 1 cut(s) 174
LguI GCTCTTC 1 cut(s) 422
LmnI GCTCC 7 cut(s) 787, 808, 937, 1500, 1692, 1857, 1964
Lsp1109I GCAGC 2 cut(s) 611, 1850
LweI GCATC 5 cut(s) 769, 1537, 1815, 1854, 2047
MaeI CTAG 3 cut(s) 6, 1599, 1635
MaeII ACGT 2 cut(s) 12, 115
MaeIII GTNAC 4 cut(s) 8, 39, 868, 1699
MflI RGATCY 2 cut(s) 708, 1249
MhlI GDGCHC 2 cut(s) 351, 792
MlyI GAGTC 2 cut(s) 1892, 1982
MmeI TCCRAC 3 cut(s) 106, 1522, 1888
Mph1103I ATGCAT 1 cut(s) 2062
MslI CAYNNNNRTG 4 cut(s) 1107, 1340, 1468, 1808
MspR9I CCNGG 2 cut(s) 522, 1299
Mva1269I GAATGC 1 cut(s) 1741
MvaI CCWGG 2 cut(s) 522, 1299
MwoI GCNNNNNNNGC 2 cut(s) 458, 1085
NcoI CCATGG 1 cut(s) 569
NdeI CATATG 1 cut(s) 907
NlaIII CATG 7 cut(s) 356, 395, 573, 796, 953, 1852, 2064
NlaIV GGNNCC 5 cut(s) 172, 526, 804, 1694, 1859
NsiI ATGCAT 1 cut(s) 2062
NspI RCATGY 2 cut(s) 395, 953
NspV TTCGAA 2 cut(s) 95, 147
PciI ACATGT 1 cut(s) 949
PciSI GCTCTTC 1 cut(s) 422
PctI GAATGC 1 cut(s) 1741
PfeI GAWTC 3 cut(s) 365, 1127, 1627
PflMI CCANNNNNTGG 1 cut(s) 718
PkrI GCNGC 2 cut(s) 626, 1840
PleI GAGTC 2 cut(s) 1891, 1981
PpsI GAGTC 2 cut(s) 1891, 1981
PscI ACATGT 1 cut(s) 949
PsiI TTATAA 3 cut(s) 506, 704, 1379
Psp124BI GAGCTC 1 cut(s) 792
Psp6I CCWGG 2 cut(s) 520, 1297
PspFI CCCAGC 1 cut(s) 1421
PspGI CCWGG 2 cut(s) 520, 1297
PspN4I GGNNCC 5 cut(s) 172, 526, 804, 1694, 1859
PspPI GGNCC 2 cut(s) 258, 525
PsuI RGATCY 2 cut(s) 708, 1249
RsaI GTAC 7 cut(s) 73, 172, 337, 681, 914, 946, 1853
RsaNI GTAC 7 cut(s) 72, 171, 336, 680, 913, 945, 1852
RseI CAYNNNNRTG 4 cut(s) 1107, 1340, 1468, 1808
SacI GAGCTC 1 cut(s) 792
SapI GCTCTTC 1 cut(s) 422
SatI GCNGC 2 cut(s) 625, 1839
Sau96I GGNCC 2 cut(s) 258, 525
ScaI AGTACT 1 cut(s) 337
SchI GAGTC 2 cut(s) 1892, 1982
ScrFI CCNGG 2 cut(s) 522, 1299
SduI GDGCHC 2 cut(s) 351, 792
SfaNI GCATC 5 cut(s) 769, 1537, 1815, 1854, 2047
SfcI CTRYAG 1 cut(s) 1929
SfuI TTCGAA 2 cut(s) 95, 147
SinI GGWCC 1 cut(s) 525
SmiMI CAYNNNNRTG 4 cut(s) 1107, 1340, 1468, 1808
SmlI CTYRAG 3 cut(s) 406, 998, 1513
SmoI CTYRAG 3 cut(s) 406, 998, 1513
SpeI ACTAGT 1 cut(s) 1598
SsiI CCGC 4 cut(s) 450, 1195, 1667, 1934
SspI AATATT 1 cut(s) 1095
SspMI CTAG 3 cut(s) 6, 1599, 1635
SstI GAGCTC 1 cut(s) 792
StyD4I CCNGG 2 cut(s) 520, 1297
StyI CCWWGG 2 cut(s) 35, 569
TaiI ACGT 2 cut(s) 15, 118
TaqI TCGA 5 cut(s) 95, 147, 237, 531, 1284
TaqII GACCGA 1 cut(s) 1294
TatI WGTACW 3 cut(s) 335, 944, 1851
TfiI GAWTC 3 cut(s) 365, 1127, 1627
TscAI CASTG 5 cut(s) 127, 636, 1759, 1912, 1990
TseI GCWGC 2 cut(s) 624, 1838
TspDTI ATGAA 6 cut(s) 246, 309, 378, 845, 873, 1386
TspRI CASTG 5 cut(s) 127, 636, 1759, 1912, 1990
Van91I CCANNNNNTGG 1 cut(s) 718
VneI GTGCAC 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 525
XapI RAATTY 2 cut(s) 832, 874
XceI RCATGY 2 cut(s) 395, 953
XcmI CCANNNNNNNNNTGG 1 cut(s) 1048
XmiI GTMKAC 1 cut(s) 1886
XspI CTAG 3 cut(s) 6, 1599, 1635
ZrmI AGTACT 1 cut(s) 337
Zsp2I ATGCAT 1 cut(s) 2062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.