Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008959

Physical Location & Seq

Genomic Coordinates Reverse (-)

59010683 .. 59013545

Gene Structure 2863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0458500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGGCAGTTCTGATTGCTGGGTCAAGACTCAAGAGGATATGATAACTATAGGCATCAGGTTAGATTTTGCCAGATCATATATCTCTTTAGCTGATGTATGCCATGCATACCAGATACTGCAGAAAGGTGGACTCAAAGATGAGAATATCATTGTGTTCATATATGACGATATTGCATTCAACCCAAAAAATCCTAGACCTGGTGTCATTATCAACAAGCCAGATGGACATGATGTTTATCAAGGAGTTCCCAAGGACTATACAGGAAAGGATATTAACACTCGCAACTTCTATGCTGTTCTTCTTGGCAACATAAGTGCCCTCACTGGTGGTAGCGGCAAGGTTCTAAATAGCGGTCCAAACGACCACGTTTTCATTTATTACGCTGACCATGGCAACCCTGGGGCATGCCAATTGAAGGTGATTACGTATATGCTAAAGTCTAAAGATCTCAAAGATGTGCTGAAGAAGAAGCACGATGCAAAAGGTTACAAAAGCATGGGGTTTTACATGGAAGCTTGCGAGTCTGGGAGCCTGTTTGAGGGCCTCCTTCCCAACAATATAAGCATATATGCAACTACAGCAGCAAATTCAAAAGAGAGCAGTTGGGGATTCTATTGTCCTGGAGACTTCCCTAGTCCTCCTCCAGGATATGACGTCCGAAGGAGAACAGCAAATGGCTACTTAGATTCAAGCCATGTCATGCAATTTGGGAATAAGAGACAGAGCGAGGATTTCATCTTCACTTACATGGGTACAAATCCTGAAAATGATAACTACACTTACTTCAAGTACACGGCATCACCATCGACCTCAAGGCCAAGGGTTGTCAGCCAACGCAATGCAGACCTCCTCCATCTTCGGTACAAGTTCGACAATGCCCCTGATGGCTCCGATGTGAAGCTTGAAGCTCACAAACAGCTCATTGATAAAAATTTTCGGAGGAAAAAGGTGGATTATAACGTAAAGCAGATAGGGAAGCTTTTGTTTGGGTATGACAAGAGTTCAGAAGTGATGAAGAATGTTAGGACTCCGGGGGAACCTCTAGTAGATGATTGGGACTGCTTTAAGATGCTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015629 GO:0016043 GO:0016049 GO:0022414 GO:0022607 GO:0030029 GO:0030036 GO:0030154 GO:0030312 GO:0032432 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0044877 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051015 GO:0051017 GO:0051639 GO:0051704 GO:0051764 GO:0060560 GO:0061572 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

360

Amino Acids

40.64

Weight (kDa)

8.63

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C13	PF01650	27 - 209	1.2e-75	Peptidase C13 family
Legum_prodom	PF20985	307 - 359	8.2e-14	Legumain, prodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04750 AT5G35700
fragaria_vesca	FvH4_6g41540 FvH4_6g41540
malus_domestica	MD09G1119000.v1.1 MD17G1109900.v1.1
prunus_persica	Prupe.3G205200_v2.0.a1
pyrus_communis	pycom09g04390 pycom17g10220
rosa_chinensis	RchiOBHm_Chr2g0157211
rosa_laevigata	RLG00000020972
rosa_multiflora	Rmu_sc0006282.1_g000007 Rmu_sc0039256.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092410
rosa_rugosa	Rorug02G0458400 Rorug02G0458500
rosa_samantha	Rh2AG523900 Rh2BG538300 Rh2CG508700 Rh2DG547200
rosa_wichuraiana	Rw2G043330 Rw2G043390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	960
AatII	GACGTC	1 cut(s)	660
AciI	CCGC	2 cut(s)	336, 354
AcsI	RAATTY	2 cut(s)	589, 934
AcuI	CTGAAG	1 cut(s)	485
AcyI	GRCGYC	1 cut(s)	657
AfaI	GTAC	3 cut(s)	757, 794, 866
AfiI	CCNNNNNNNGG	4 cut(s)	200, 418, 541, 647
AflII	CTTAAG	1 cut(s)	1076
AgsI	TTSAA	6 cut(s)	181, 418, 594, 693, 790, 908
AhdI	GACNNNNNGTC	1 cut(s)	203
AjnI	CCWGG	4 cut(s)	199, 400, 622, 646
AluBI	AGCT	6 cut(s)	92, 518, 904, 911, 922, 982
AluI	AGCT	6 cut(s)	92, 518, 904, 911, 922, 982
Alw26I	GTCTC	2 cut(s)	621, 715
AlwNI	CAGNNNCTG	1 cut(s)	118
AoxI	GGCC	2 cut(s)	544, 818
ApeKI	GCWGC	1 cut(s)	584
ApoI	RAATTY	2 cut(s)	589, 934
AspS9I	GGNCC	2 cut(s)	356, 544
AsuC2I	CCSGG	1 cut(s)	1035
AsuHPI	GGTGA	2 cut(s)	433, 795
AvaII	GGWCC	1 cut(s)	356
BaeGI	GKGCMC	1 cut(s)	322
BbvI	GCAGC	1 cut(s)	596
BccI	CCATC	4 cut(s)	218, 814, 864, 881
BceAI	ACGGC	1 cut(s)	813
BcgI	CGANNNNNNTGC	2 cut(s)	789, 823
BciT130I	CCWGG	4 cut(s)	201, 402, 624, 648
BcnI	CCSGG	1 cut(s)	1035
BcoDI	GTCTC	2 cut(s)	621, 715
BfaI	CTAG	3 cut(s)	195, 636, 1046
BfmI	CTRYAG	3 cut(s)	48, 119, 579
BfrI	CTTAAG	1 cut(s)	1076
BglII	AGATCT	1 cut(s)	448
BisI	GCNGC	2 cut(s)	337, 585
BlsI	GCNGC	2 cut(s)	338, 586
Bme1390I	CCNGG	5 cut(s)	201, 402, 624, 648, 1035
Bme18I	GGWCC	1 cut(s)	356
BmeRI	GACNNNNNGTC	1 cut(s)	203
BmgT120I	GGNCC	2 cut(s)	356, 544
BmiI	GGNNCC	3 cut(s)	533, 892, 1041
BmrFI	CCNGG	5 cut(s)	201, 402, 624, 648, 1035
BmsI	GCATC	4 cut(s)	63, 469, 809, 1062
BpmI	CTGGAG	2 cut(s)	630, 645
BpuEI	CTTGAG	2 cut(s)	15, 799
BpuMI	CCSGG	1 cut(s)	1035
BsaAI	YACGTR	1 cut(s)	429
BsaBI	GATNNNNATC	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	657
BsaJI	CCNNGG	6 cut(s)	252, 391, 400, 401, 821, 1034
Bsc4I	CCNNNNNNNGG	4 cut(s)	200, 418, 541, 647
Bse1I	ACTGG	1 cut(s)	331
Bse3DI	GCAATG	1 cut(s)	847
Bse8I	GATNNNNATC	1 cut(s)	237
BseBI	CCWGG	4 cut(s)	201, 402, 624, 648
BseDI	CCNNGG	6 cut(s)	252, 391, 400, 401, 821, 1034
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	4 cut(s)	200, 418, 541, 647
BseMI	GCAATG	1 cut(s)	847
BseNI	ACTGG	1 cut(s)	331
BseRI	GAGGAG	2 cut(s)	633, 842
BseSI	GKGCMC	1 cut(s)	322
BseXI	GCAGC	1 cut(s)	596
BseYI	CCCAGC	1 cut(s)	18
BshFI	GGCC	2 cut(s)	546, 820
BsiSI	CCGG	1 cut(s)	1034
BslFI	GGGAC	1 cut(s)	1073
BslI	CCNNNNNNNGG	4 cut(s)	200, 418, 541, 647
BsmAI	GTCTC	2 cut(s)	621, 715
BsmFI	GGGAC	1 cut(s)	1073
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	2 cut(s)	546, 820
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	2 cut(s)	74, 448
Bsp19I	CCATGG	1 cut(s)	391
BspACI	CCGC	2 cut(s)	336, 354
BspANI	GGCC	2 cut(s)	546, 820
BspLI	GGNNCC	3 cut(s)	533, 892, 1041
BspMAI	CTGCAG	1 cut(s)	123
BspTI	CTTAAG	1 cut(s)	1076
BsrDI	GCAATG	1 cut(s)	847
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	6 cut(s)	252, 391, 400, 401, 821, 1034
BssMI	GATC	2 cut(s)	74, 448
BssNI	GRCGYC	1 cut(s)	657
BssT1I	CCWWGG	3 cut(s)	252, 391, 821
Bst2UI	CCWGG	4 cut(s)	201, 402, 624, 648
BstACI	GRCGYC	1 cut(s)	657
BstAFI	CTTAAG	1 cut(s)	1076
BstBAI	YACGTR	1 cut(s)	429
BstC8I	GCNNGC	2 cut(s)	409, 520
BstDEI	CTNAG	1 cut(s)	685
BstDSI	CCRYGG	1 cut(s)	391
BstENI	CCTNNNNNAGG	2 cut(s)	539, 645
BstKTI	GATC	2 cut(s)	77, 451
BstMAI	GTCTC	2 cut(s)	621, 715
BstMBI	GATC	2 cut(s)	74, 448
BstMWI	GCNNNNNNNGC	1 cut(s)	581
BstNI	CCWGG	4 cut(s)	201, 402, 624, 648
BstNSI	RCATGY	1 cut(s)	411
BstSCI	CCNGG	5 cut(s)	199, 400, 622, 646, 1033
BstSFI	CTRYAG	3 cut(s)	48, 119, 579
BstSLI	GKGCMC	1 cut(s)	322
BstSNI	TACGTA	1 cut(s)	429
BstV1I	GCAGC	1 cut(s)	596
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
BsuRI	GGCC	2 cut(s)	546, 820
BtgI	CCRYGG	1 cut(s)	391
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	2 cut(s)	409, 520
CaiI	CAGNNNCTG	1 cut(s)	118
Cfr13I	GGNCC	2 cut(s)	356, 544
CsiI	ACCWGGT	1 cut(s)	199
Csp6I	GTAC	3 cut(s)	756, 793, 865
CviAII	CATG	9 cut(s)	104, 230, 392, 408, 499, 511, 698, 703, 751
CviQI	GTAC	3 cut(s)	756, 793, 865
DdeI	CTNAG	1 cut(s)	685
DpnI	GATC	2 cut(s)	76, 450
DpnII	GATC	2 cut(s)	74, 448
DriI	GACNNNNNGTC	1 cut(s)	203
Eam1105I	GACNNNNNGTC	1 cut(s)	203
Eco105I	TACGTA	1 cut(s)	429
Eco130I	CCWWGG	3 cut(s)	252, 391, 821
Eco47I	GGWCC	1 cut(s)	356
Eco57I	CTGAAG	1 cut(s)	485
EcoNI	CCTNNNNNAGG	2 cut(s)	539, 645
EcoO109I	RGGNCCY	1 cut(s)	544
EcoRII	CCWGG	4 cut(s)	199, 400, 622, 646
EcoT14I	CCWWGG	3 cut(s)	252, 391, 821
EcoT22I	ATGCAT	1 cut(s)	109
ErhI	CCWWGG	3 cut(s)	252, 391, 821
FaeI	CATG	9 cut(s)	107, 233, 395, 411, 502, 514, 701, 706, 754
FaqI	GGGAC	1 cut(s)	1073
FatI	CATG	9 cut(s)	103, 229, 391, 407, 498, 510, 697, 702, 750
Fnu4HI	GCNGC	2 cut(s)	337, 585
Fsp4HI	GCNGC	2 cut(s)	337, 585
FspBI	CTAG	3 cut(s)	195, 636, 1046
GluI	GCNGC	2 cut(s)	337, 585
GsaI	CCCAGC	1 cut(s)	22
GsuI	CTGGAG	2 cut(s)	630, 645
HaeIII	GGCC	2 cut(s)	546, 820
HapII	CCGG	1 cut(s)	1034
Hin1I	GRCGYC	1 cut(s)	657
Hin1II	CATG	9 cut(s)	107, 233, 395, 411, 502, 514, 701, 706, 754
HindIII	AAGCTT	3 cut(s)	516, 902, 980
HinfI	GANTC	6 cut(s)	28, 132, 524, 612, 689, 1030
HpaII	CCGG	1 cut(s)	1034
HphI	GGTGA	2 cut(s)	433, 795
Hpy166II	GTNNAC	2 cut(s)	131, 795
Hpy188I	TCNGA	5 cut(s)	13, 662, 895, 942, 1009
Hpy188III	TCNNGA	3 cut(s)	25, 32, 764
Hpy8I	GTNNAC	2 cut(s)	131, 795
HpyAV	CCTTC	3 cut(s)	412, 560, 657
HpyCH4IV	ACGT	4 cut(s)	369, 428, 657, 963
HpyCH4V	TGCA	7 cut(s)	107, 121, 176, 482, 575, 706, 845
HpyF10VI	GCNNNNNNNGC	1 cut(s)	581
HpyF3I	CTNAG	1 cut(s)	685
HpySE526I	ACGT	4 cut(s)	369, 428, 657, 963
Hsp92I	GRCGYC	1 cut(s)	657
Hsp92II	CATG	9 cut(s)	107, 233, 395, 411, 502, 514, 701, 706, 754
Kzo9I	GATC	2 cut(s)	74, 448
LmnI	GCTCC	2 cut(s)	531, 896
Lsp1109I	GCAGC	1 cut(s)	596
LweI	GCATC	4 cut(s)	63, 469, 809, 1062
MabI	ACCWGGT	1 cut(s)	199
MaeI	CTAG	3 cut(s)	195, 636, 1046
MaeII	ACGT	4 cut(s)	369, 428, 657, 963
MaeIII	GTNAC	1 cut(s)	488
MalI	GATC	2 cut(s)	76, 450
MboI	GATC	2 cut(s)	74, 448
MboII	GAAGA	6 cut(s)	293, 478, 481, 733, 851, 1030
MfeI	CAATTG	1 cut(s)	413
MflI	RGATCY	1 cut(s)	448
MhlI	GDGCHC	1 cut(s)	322
MluCI	AATT	4 cut(s)	413, 589, 707, 934
MlyI	GAGTC	4 cut(s)	22, 126, 533, 1024
Mph1103I	ATGCAT	1 cut(s)	109
MseI	TTAA	3 cut(s)	276, 1068, 1077
MslI	CAYNNNNRTG	1 cut(s)	749
MspCI	CTTAAG	1 cut(s)	1076
MspI	CCGG	1 cut(s)	1034
MspR9I	CCNGG	5 cut(s)	201, 402, 624, 648, 1035
MunI	CAATTG	1 cut(s)	413
Mva1269I	GAATGC	1 cut(s)	176
MvaI	CCWGG	4 cut(s)	201, 402, 624, 648
MwoI	GCNNNNNNNGC	1 cut(s)	581
NciI	CCSGG	1 cut(s)	1035
NcoI	CCATGG	1 cut(s)	391
NdeII	GATC	2 cut(s)	74, 448
NlaIII	CATG	9 cut(s)	107, 233, 395, 411, 502, 514, 701, 706, 754
NlaIV	GGNNCC	3 cut(s)	533, 892, 1041
NsiI	ATGCAT	1 cut(s)	109
NspI	RCATGY	1 cut(s)	411
PaeI	GCATGC	1 cut(s)	411
PasI	CCCWGGG	1 cut(s)	401
PctI	GAATGC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	612, 689
PfoI	TCCNGGA	2 cut(s)	622, 646
PkrI	GCNGC	2 cut(s)	338, 586
PleI	GAGTC	4 cut(s)	22, 126, 532, 1024
PpsI	GAGTC	4 cut(s)	22, 126, 532, 1024
Ppu21I	YACGTR	1 cut(s)	429
PsiI	TTATAA	1 cut(s)	960
Psp6I	CCWGG	4 cut(s)	199, 400, 622, 646
PspFI	CCCAGC	1 cut(s)	18
PspGI	CCWGG	4 cut(s)	199, 400, 622, 646
PspN4I	GGNNCC	3 cut(s)	533, 892, 1041
PspPI	GGNCC	2 cut(s)	356, 544
PstI	CTGCAG	1 cut(s)	123
PstNI	CAGNNNCTG	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	448
RsaI	GTAC	3 cut(s)	757, 794, 866
RsaNI	GTAC	3 cut(s)	756, 793, 865
RseI	CAYNNNNRTG	1 cut(s)	749
SaqAI	TTAA	3 cut(s)	276, 1068, 1077
SatI	GCNGC	2 cut(s)	337, 585
Sau3AI	GATC	2 cut(s)	74, 448
Sau96I	GGNCC	2 cut(s)	356, 544
SchI	GAGTC	4 cut(s)	22, 126, 533, 1024
ScrFI	CCNGG	5 cut(s)	201, 402, 624, 648, 1035
SduI	GDGCHC	1 cut(s)	322
SexAI	ACCWGGT	1 cut(s)	199
SfaNI	GCATC	4 cut(s)	63, 469, 809, 1062
SfcI	CTRYAG	3 cut(s)	48, 119, 579
SinI	GGWCC	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	749
SmlI	CTYRAG	3 cut(s)	30, 814, 1076
SmoI	CTYRAG	3 cut(s)	30, 814, 1076
SnaBI	TACGTA	1 cut(s)	429
SphI	GCATGC	1 cut(s)	411
Sse9I	AATT	4 cut(s)	413, 589, 707, 934
SsiI	CCGC	2 cut(s)	336, 354
SspMI	CTAG	3 cut(s)	195, 636, 1046
StyD4I	CCNGG	5 cut(s)	199, 400, 622, 646, 1033
StyI	CCWWGG	3 cut(s)	252, 391, 821
TaiI	ACGT	4 cut(s)	372, 431, 660, 966
TaqI	TCGA	2 cut(s)	809, 873
TasI	AATT	4 cut(s)	413, 589, 707, 934
TatI	WGTACW	1 cut(s)	792
TauI	GCSGC	1 cut(s)	339
TfiI	GAWTC	2 cut(s)	612, 689
Tru1I	TTAA	3 cut(s)	276, 1068, 1077
Tru9I	TTAA	3 cut(s)	276, 1068, 1077
TscAI	CASTG	1 cut(s)	331
TseI	GCWGC	1 cut(s)	584
TspDTI	ATGAA	4 cut(s)	148, 364, 727, 1031
TspRI	CASTG	1 cut(s)	331
Vha464I	CTTAAG	1 cut(s)	1076
VpaK11BI	GGWCC	1 cut(s)	356
XagI	CCTNNNNNAGG	2 cut(s)	539, 645
XapI	RAATTY	2 cut(s)	589, 934
XceI	RCATGY	1 cut(s)	411
XcmI	CCANNNNNNNNNTGG	1 cut(s)	398
XspI	CTAG	3 cut(s)	195, 636, 1046
ZraI	GACGTC	1 cut(s)	658
Zsp2I	ATGCAT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.