Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008959

Physical Location & Seq

Genomic Coordinates Reverse (-)

3226932 .. 3228904

Gene Structure 1973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g04390.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTCCTTTGCTGAGATGATGACAGATGATGCCGAAACTTCTCGAGAAGAGAGATGTTTCCGACTGTGGATTAACAGTCTTGGAACTGCTACCTATGTCAATAATCTTTTTGAAGATGTCAGAAATGGATGGGTTCTTTTAGAAGTGCTTGACAAAATTTCTTCAGGATCGATCAACTGGAAGAAGGCATCAAAGCCTCCAATAAAAATGCCGTTTAGAAAAGTCGAGAATGCCAACCAAGTTATAGAGATTGGAAAGGAATTAAATTTCTCCCTTGTGAATGTAGCAGGGAATGATATTGTGCAAGGAAATAAGAAGCTCATACTGGCATTTTTATGGCAGTTGATGAGGTTTAGTATGCTTCAACTCTTGAGAAACTTGAGATCCCACTCCCAAGATAAAGCGGGTAAAGAGATTACTGATGCTGACATTCTAAACTGGGCGAACAAAAAAGTTAAGAAGGCGGGTAGAACCTCCCAAATAGAGAGTTTCAAGGATAAAAACCTTTCAAGTGGAGTTTTCTTCCTCGAGCTTCTTAGTTCTGTGGAGCCAAGGGTGGTCAACTGGAGCCTTGCCACCAAGGGGGAAACTGAGGAAGATAAGAAGTTGAATGCAACGTATATAATCAGTGTTGCCCGAAAGCTAGGTTGCTCCATTTTCTTGTTACCAGAGGACATTTTGGTGGTAAACCAGAAGATGATGCTTACTTTGACTGCAAGCATCATGTACTGGAGTCTGCAGCAACCGGGAGGGGAAGCGGAATCAAACCTTAGCACTCCTGACGGGTCCCCTACAGCTTCCGCTGATGGCGAGAAGGAAGCAACTTTGGCCAGTGCAGTCTCCAATCTGTCTGTGGACGAAGCTGCTTCAAACCCAACCTCCCAACAGACAGAACACGAAAATCCCTCGAAGGTCGAAAATGAGGAATCGTCTGTAGAAAATGAAAAAAAGGACACTTCTGGTGAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015629 GO:0016043 GO:0016049 GO:0022414 GO:0022607 GO:0030029 GO:0030036 GO:0030154 GO:0030312 GO:0032432 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0044877 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051015 GO:0051017 GO:0051639 GO:0051704 GO:0051764 GO:0060560 GO:0061572 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

324

Amino Acids

35.93

Weight (kDa)

5.22

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04750 AT5G35700
fragaria_vesca	FvH4_6g41540 FvH4_6g41540
malus_domestica	MD09G1119000.v1.1 MD17G1109900.v1.1
prunus_persica	Prupe.3G205200_v2.0.a1
pyrus_communis	pycom09g04390 pycom17g10220
rosa_chinensis	RchiOBHm_Chr2g0157211
rosa_laevigata	RLG00000020972
rosa_multiflora	Rmu_sc0006282.1_g000007 Rmu_sc0039256.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092410
rosa_rugosa	Rorug02G0458400 Rorug02G0458500
rosa_samantha	Rh2AG523900 Rh2BG538300 Rh2CG508700 Rh2DG547200
rosa_wichuraiana	Rw2G043330 Rw2G043390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	404, 464, 758, 801
AclWI	GGATC	2 cut(s)	175, 378
AcoI	YGGCCR	1 cut(s)	828
AcsI	RAATTY	2 cut(s)	156, 265
AcuI	CTGAAG	1 cut(s)	147
AfaI	GTAC	1 cut(s)	728
AfiI	CCNNNNNNNGG	1 cut(s)	582
AgsI	TTSAA	6 cut(s)	113, 365, 493, 510, 610, 870
AluBI	AGCT	5 cut(s)	319, 532, 643, 797, 863
AluI	AGCT	5 cut(s)	319, 532, 643, 797, 863
Alw26I	GTCTC	1 cut(s)	844
AlwI	GGATC	2 cut(s)	175, 378
Ama87I	CYCGRG	2 cut(s)	42, 527
AoxI	GGCC	1 cut(s)	828
ApeKI	GCWGC	2 cut(s)	739, 863
ApoI	RAATTY	2 cut(s)	156, 265
AspS9I	GGNCC	1 cut(s)	786
AsuC2I	CCSGG	1 cut(s)	747
AvaI	CYCGRG	2 cut(s)	42, 527
AvaII	GGWCC	1 cut(s)	786
BalI	TGGCCA	1 cut(s)	830
BbvI	GCAGC	2 cut(s)	751, 850
BccI	CCATC	2 cut(s)	123, 800
BceAI	ACGGC	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	747
BcoDI	GTCTC	1 cut(s)	844
BfaI	CTAG	1 cut(s)	644
BfmI	CTRYAG	3 cut(s)	737, 792, 933
BisI	GCNGC	2 cut(s)	740, 864
BlsI	GCNGC	2 cut(s)	741, 865
Bme1390I	CCNGG	1 cut(s)	747
Bme18I	GGWCC	1 cut(s)	786
BmeT110I	CYCGRG	2 cut(s)	42, 527
BmgT120I	GGNCC	1 cut(s)	786
BmiI	GGNNCC	4 cut(s)	549, 569, 787, 788
BmrFI	CCNGG	1 cut(s)	747
BmrI	ACTGGG	1 cut(s)	448
BmsI	GCATC	5 cut(s)	19, 197, 412, 690, 729
BmuI	ACTGGG	1 cut(s)	448
BpmI	CTGGAG	2 cut(s)	586, 751
Bpu10I	CCTNAGC	1 cut(s)	770
BpuEI	CTTGAG	2 cut(s)	391, 400
BpuMI	CCSGG	1 cut(s)	747
Bsa29I	ATCGAT	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	551, 579
BsaXI	ACNNNNNCTCC	2 cut(s)	863, 893
Bsc4I	CCNNNNNNNGG	1 cut(s)	582
Bse1I	ACTGG	6 cut(s)	182, 330, 443, 569, 734, 831
BseCI	ATCGAT	1 cut(s)	170
BseDI	CCNNGG	2 cut(s)	551, 579
BseGI	GGATG	1 cut(s)	134
BseLI	CCNNNNNNNGG	1 cut(s)	582
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	6 cut(s)	182, 330, 443, 569, 734, 831
BseXI	GCAGC	2 cut(s)	751, 850
BsgI	GTGCAG	1 cut(s)	855
BshFI	GGCC	1 cut(s)	830
BshVI	ATCGAT	1 cut(s)	170
BsiHKCI	CYCGRG	2 cut(s)	42, 527
BsiSI	CCGG	1 cut(s)	746
BslFI	GGGAC	1 cut(s)	772
BslI	CCNNNNNNNGG	1 cut(s)	582
BsmAI	GTCTC	1 cut(s)	844
BsmFI	GGGAC	1 cut(s)	772
BsmI	GAATGC	2 cut(s)	235, 616
BsnI	GGCC	1 cut(s)	830
BsoBI	CYCGRG	2 cut(s)	42, 527
Bsp143I	GATC	3 cut(s)	167, 171, 383
BspACI	CCGC	4 cut(s)	404, 464, 758, 801
BspANI	GGCC	1 cut(s)	830
BspCNI	CTCAG	2 cut(s)	4, 583
BspDI	ATCGAT	1 cut(s)	170
BspLI	GGNNCC	4 cut(s)	549, 569, 787, 788
BspMAI	CTGCAG	1 cut(s)	741
BspPI	GGATC	2 cut(s)	175, 378
BsrI	ACTGG	6 cut(s)	182, 330, 443, 569, 734, 831
BssECI	CCNNGG	2 cut(s)	551, 579
BssMI	GATC	3 cut(s)	167, 171, 383
BssT1I	CCWWGG	2 cut(s)	551, 579
Bst4CI	ACNGT	2 cut(s)	66, 77
Bst6I	CTCTTC	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	718
BstDEI	CTNAG	4 cut(s)	12, 536, 591, 770
BstF5I	GGATG	1 cut(s)	134
BstKTI	GATC	3 cut(s)	170, 174, 386
BstMAI	GTCTC	1 cut(s)	844
BstMBI	GATC	3 cut(s)	167, 171, 383
BstMWI	GCNNNNNNNGC	1 cut(s)	827
BstSCI	CCNGG	1 cut(s)	745
BstSFI	CTRYAG	3 cut(s)	737, 792, 933
BstV1I	GCAGC	2 cut(s)	751, 850
BstX2I	RGATCY	1 cut(s)	383
BstYI	RGATCY	1 cut(s)	383
Bsu15I	ATCGAT	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	830
BsuTUI	ATCGAT	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	134
BtsIMutI	CAGTG	2 cut(s)	634, 838
Cac8I	GCNNGC	1 cut(s)	718
Cfr13I	GGNCC	1 cut(s)	786
ClaI	ATCGAT	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	727
CviAII	CATG	1 cut(s)	724
CviJI	RGCY	9 cut(s)	196, 319, 532, 550, 570, 643, 797, 830, 863
CviKI_1	RGCY	9 cut(s)	196, 319, 532, 550, 570, 643, 797, 830, 863
CviQI	GTAC	1 cut(s)	727
DdeI	CTNAG	4 cut(s)	12, 536, 591, 770
DpnI	GATC	3 cut(s)	169, 173, 385
DpnII	GATC	3 cut(s)	167, 171, 383
EaeI	YGGCCR	1 cut(s)	828
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco130I	CCWWGG	2 cut(s)	551, 579
Eco47I	GGWCC	1 cut(s)	786
Eco57I	CTGAAG	1 cut(s)	147
Eco88I	CYCGRG	2 cut(s)	42, 527
EcoO109I	RGGNCCY	1 cut(s)	786
EcoT14I	CCWWGG	2 cut(s)	551, 579
ErhI	CCWWGG	2 cut(s)	551, 579
FaeI	CATG	1 cut(s)	727
FaiI	YATR	8 cut(s)	96, 245, 323, 337, 359, 621, 623, 725
FaqI	GGGAC	1 cut(s)	772
FatI	CATG	1 cut(s)	723
FauI	CCCGC	2 cut(s)	397, 457
Fnu4HI	GCNGC	2 cut(s)	740, 864
FokI	GGATG	1 cut(s)	141
Fsp4HI	GCNGC	2 cut(s)	740, 864
FspBI	CTAG	1 cut(s)	644
GluI	GCNGC	2 cut(s)	740, 864
GsuI	CTGGAG	2 cut(s)	586, 751
HaeIII	GGCC	1 cut(s)	830
HapII	CCGG	1 cut(s)	746
Hin1II	CATG	1 cut(s)	727
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HinfI	GANTC	3 cut(s)	733, 761, 926
HpaII	CCGG	1 cut(s)	746
Hpy166II	GTNNAC	3 cut(s)	562, 688, 856
Hpy188I	TCNGA	2 cut(s)	62, 122
Hpy188III	TCNNGA	6 cut(s)	42, 44, 165, 226, 370, 779
Hpy8I	GTNNAC	3 cut(s)	562, 688, 856
HpyAV	CCTTC	4 cut(s)	178, 454, 808, 904
HpyCH4III	ACNGT	2 cut(s)	66, 77
HpyCH4IV	ACGT	1 cut(s)	617
HpyCH4V	TGCA	5 cut(s)	304, 614, 716, 739, 836
HpyF10VI	GCNNNNNNNGC	1 cut(s)	827
HpyF3I	CTNAG	4 cut(s)	12, 536, 591, 770
HpySE526I	ACGT	1 cut(s)	617
Hsp92II	CATG	1 cut(s)	727
KflI	GGGWCCC	1 cut(s)	786
Kzo9I	GATC	3 cut(s)	167, 171, 383
LmnI	GCTCC	3 cut(s)	547, 567, 656
Lsp1109I	GCAGC	2 cut(s)	751, 850
LweI	GCATC	5 cut(s)	19, 197, 412, 690, 729
MaeI	CTAG	1 cut(s)	644
MaeII	ACGT	1 cut(s)	617
MaeIII	GTNAC	1 cut(s)	663
MalI	GATC	3 cut(s)	169, 173, 385
MboI	GATC	3 cut(s)	167, 171, 383
MboII	GAAGA	7 cut(s)	59, 125, 153, 193, 514, 608, 706
MflI	RGATCY	1 cut(s)	383
MlsI	TGGCCA	1 cut(s)	830
MluCI	AATT	3 cut(s)	156, 260, 265
MluNI	TGGCCA	1 cut(s)	830
MlyI	GAGTC	1 cut(s)	742
MmeI	TCCRAC	1 cut(s)	85
Mox20I	TGGCCA	1 cut(s)	830
MscI	TGGCCA	1 cut(s)	830
MseI	TTAA	3 cut(s)	72, 263, 456
MslI	CAYNNNNRTG	2 cut(s)	334, 680
Msp20I	TGGCCA	1 cut(s)	830
MspA1I	CMGCKG	1 cut(s)	803
MspI	CCGG	1 cut(s)	746
MspR9I	CCNGG	1 cut(s)	747
Mva1269I	GAATGC	2 cut(s)	235, 616
MwoI	GCNNNNNNNGC	1 cut(s)	827
NciI	CCSGG	1 cut(s)	747
NdeII	GATC	3 cut(s)	167, 171, 383
NlaIII	CATG	1 cut(s)	727
NlaIV	GGNNCC	4 cut(s)	549, 569, 787, 788
PaeR7I	CTCGAG	2 cut(s)	42, 527
PctI	GAATGC	2 cut(s)	235, 616
PfeI	GAWTC	2 cut(s)	761, 926
PkrI	GCNGC	2 cut(s)	741, 865
PleI	GAGTC	1 cut(s)	741
PpsI	GAGTC	1 cut(s)	741
PpuMI	RGGWCCY	1 cut(s)	786
Psp5II	RGGWCCY	1 cut(s)	786
PspN4I	GGNNCC	4 cut(s)	549, 569, 787, 788
PspPI	GGNCC	1 cut(s)	786
PspPPI	RGGWCCY	1 cut(s)	786
PspXI	VCTCGAGB	1 cut(s)	527
PstI	CTGCAG	1 cut(s)	741
PsuI	RGATCY	1 cut(s)	383
RsaI	GTAC	1 cut(s)	728
RsaNI	GTAC	1 cut(s)	727
RseI	CAYNNNNRTG	2 cut(s)	334, 680
SaqAI	TTAA	3 cut(s)	72, 263, 456
SatI	GCNGC	2 cut(s)	740, 864
Sau3AI	GATC	3 cut(s)	167, 171, 383
Sau96I	GGNCC	1 cut(s)	786
SchI	GAGTC	1 cut(s)	742
ScrFI	CCNGG	1 cut(s)	747
SfaNI	GCATC	5 cut(s)	19, 197, 412, 690, 729
SfcI	CTRYAG	3 cut(s)	737, 792, 933
Sfr274I	CTCGAG	2 cut(s)	42, 527
SinI	GGWCC	1 cut(s)	786
SlaI	CTCGAG	2 cut(s)	42, 527
SmiMI	CAYNNNNRTG	2 cut(s)	334, 680
SmlI	CTYRAG	4 cut(s)	42, 370, 379, 527
SmoI	CTYRAG	4 cut(s)	42, 370, 379, 527
Sse9I	AATT	3 cut(s)	156, 260, 265
SsiI	CCGC	4 cut(s)	404, 464, 758, 801
SspMI	CTAG	1 cut(s)	644
StyD4I	CCNGG	1 cut(s)	745
StyI	CCWWGG	2 cut(s)	551, 579
TaaI	ACNGT	2 cut(s)	66, 77
TaiI	ACGT	1 cut(s)	620
TaqI	TCGA	6 cut(s)	43, 170, 225, 528, 908, 915
TasI	AATT	3 cut(s)	156, 260, 265
TatI	WGTACW	1 cut(s)	726
TfiI	GAWTC	2 cut(s)	761, 926
Tru1I	TTAA	3 cut(s)	72, 263, 456
Tru9I	TTAA	3 cut(s)	72, 263, 456
TscAI	CASTG	2 cut(s)	634, 838
TseI	GCWGC	2 cut(s)	739, 863
TspDTI	ATGAA	1 cut(s)	957
TspRI	CASTG	2 cut(s)	634, 838
VpaK11BI	GGWCC	1 cut(s)	786
XapI	RAATTY	2 cut(s)	156, 265
XcmI	CCANNNNNNNNNTGG	1 cut(s)	850
XhoI	CTCGAG	2 cut(s)	42, 527
XspI	CTAG	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.