AT5G35732

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009447
Physical Location & Seq
Forward (+)
13897778 .. 13899087
1310 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G35732.2

Sequence Viewer

Length: 303 bp
ATGACGCAGATGCTTTCCGTACTCCGTCGCAACCTTCAAAACCTTCGTAAGAGCCCTCGCGTAGCTGACGATACCGAGTTACCTTCATCGACTAGTGGCGCCGGGCCGGGAGTTGTAGCTAATGGAAGACGAGACGGGTTTAACTCCGTGATCATGCGGTTCCCGTTCTCGATCATCTCTTGCTTTGCGGTGCCCCGTGTTAGCGGGACAGATGGACTATGGGTGTCTGGAGATTATGGTAGCATCTCGGAGGTTAACCATCTTATGGTTAGTGATAGTATGAGATACGCCATTTTAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.9

Weight (kDa)

9.18

Isoelectric Point (pI)

49.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 98, 190
AccB7I CCANNNNNTGG 1 cut(s) 265
AccII CGCG 1 cut(s) 60
AciI CCGC 3 cut(s) 157, 188, 204
AcyI GRCGYC 1 cut(s) 99
AfaI GTAC 1 cut(s) 21
AfiI CCNNNNNNNGG 1 cut(s) 265
AgsI TTSAA 1 cut(s) 38
AhlI ACTAGT 1 cut(s) 92
AluBI AGCT 2 cut(s) 65, 119
AluI AGCT 2 cut(s) 65, 119
Alw26I GTCTC 1 cut(s) 126
AoxI GGCC 1 cut(s) 104
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 104
AsuC2I CCSGG 2 cut(s) 103, 108
BaeGI GKGCMC 1 cut(s) 195
BanI GGYRCC 2 cut(s) 98, 190
BanII GRGCYC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 133
BccI CCATC 2 cut(s) 206, 267
BclI TGATCA 1 cut(s) 150
BcnI CCSGG 2 cut(s) 103, 108
BcoDI GTCTC 1 cut(s) 126
BcuI ACTAGT 1 cut(s) 92
BfaI CTAG 1 cut(s) 93
BfoI RGCGCY 1 cut(s) 102
Bme1390I CCNGG 2 cut(s) 103, 108
BmgT120I GGNCC 1 cut(s) 104
BmiI GGNNCC 3 cut(s) 100, 161, 192
BmrFI CCNGG 2 cut(s) 103, 108
BmsI GCATC 1 cut(s) 252
BpiI GAAGAC 1 cut(s) 133
BpmI CTGGAG 1 cut(s) 249
BpuMI CCSGG 2 cut(s) 103, 108
BsaHI GRCGYC 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 265
BseLI CCNNNNNNNGG 1 cut(s) 265
BseSI GKGCMC 1 cut(s) 195
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 106
BshNI GGYRCC 2 cut(s) 98, 190
BsiSI CCGG 2 cut(s) 102, 107
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 1 cut(s) 265
BsmAI GTCTC 1 cut(s) 126
BsmBI CGTCTC 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 220
BsnI GGCC 1 cut(s) 106
Bsp1286I GDGCHC 2 cut(s) 56, 195
Bsp143I GATC 2 cut(s) 150, 171
BspACI CCGC 3 cut(s) 157, 188, 204
BspANI GGCC 1 cut(s) 106
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 3 cut(s) 100, 161, 192
BspT107I GGYRCC 2 cut(s) 98, 190
BssMI GATC 2 cut(s) 150, 171
BssNI GRCGYC 1 cut(s) 99
BstACI GRCGYC 1 cut(s) 99
BstFNI CGCG 1 cut(s) 60
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 2 cut(s) 153, 174
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 2 cut(s) 150, 171
BstSCI CCNGG 2 cut(s) 101, 106
BstSLI GKGCMC 1 cut(s) 195
BstUI CGCG 1 cut(s) 60
BstV2I GAAGAC 1 cut(s) 133
BsuRI GGCC 1 cut(s) 106
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 104
CseI GACGC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 20
CviAII CATG 1 cut(s) 154
CviJI RGCY 4 cut(s) 54, 65, 106, 119
CviKI_1 RGCY 4 cut(s) 54, 65, 106, 119
CviQI GTAC 1 cut(s) 20
DinI GGCGCC 1 cut(s) 100
DpnI GATC 2 cut(s) 152, 173
DpnII GATC 2 cut(s) 150, 171
Eco24I GRGCYC 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 56
EgeI GGCGCC 1 cut(s) 100
EheI GGCGCC 1 cut(s) 100
Esp3I CGTCTC 1 cut(s) 126
FaeI CATG 1 cut(s) 157
FaiI YATR 5 cut(s) 155, 220, 237, 266, 281
FaqI GGGAC 1 cut(s) 220
FatI CATG 1 cut(s) 153
FauI CCCGC 1 cut(s) 197
FbaI TGATCA 1 cut(s) 150
FriOI GRGCYC 1 cut(s) 56
FspBI CTAG 1 cut(s) 93
GlaI GCGC 1 cut(s) 100
GsuI CTGGAG 1 cut(s) 249
HaeII RGCGCY 1 cut(s) 102
HaeIII GGCC 1 cut(s) 106
HapII CCGG 2 cut(s) 102, 107
HgaI GACGC 1 cut(s) 13
HhaI GCGC 1 cut(s) 101
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 1 cut(s) 157
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HpaI GTTAAC 1 cut(s) 256
HpaII CCGG 2 cut(s) 102, 107
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 2 cut(s) 169, 228
Hpy8I GTNNAC 1 cut(s) 256
Hpy99I CGWCG 1 cut(s) 30
HpyAV CCTTC 3 cut(s) 44, 53, 93
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 1 cut(s) 157
HspAI GCGC 1 cut(s) 99
KasI GGCGCC 1 cut(s) 98
Ksp22I TGATCA 1 cut(s) 150
KspAI GTTAAC 1 cut(s) 256
Kzo9I GATC 2 cut(s) 150, 171
LpnPI CCDG 3 cut(s) 115, 120, 213
LweI GCATC 1 cut(s) 252
MaeI CTAG 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 78
MalI GATC 2 cut(s) 152, 173
MboI GATC 2 cut(s) 150, 171
MboII GAAGA 1 cut(s) 138
MhlI GDGCHC 2 cut(s) 56, 195
Mly113I GGCGCC 1 cut(s) 99
MnlI CCTC 2 cut(s) 66, 244
MseI TTAA 3 cut(s) 141, 255, 296
MslI CAYNNNNRTG 1 cut(s) 296
MspI CCGG 2 cut(s) 102, 107
MspR9I CCNGG 2 cut(s) 103, 108
MvnI CGCG 1 cut(s) 60
NarI GGCGCC 1 cut(s) 99
NciI CCSGG 2 cut(s) 103, 108
NdeII GATC 2 cut(s) 150, 171
NlaIII CATG 1 cut(s) 157
NlaIV GGNNCC 3 cut(s) 100, 161, 192
PflMI CCANNNNNTGG 1 cut(s) 265
PluTI GGCGCC 1 cut(s) 102
PspN4I GGNNCC 3 cut(s) 100, 161, 192
PspPI GGNCC 1 cut(s) 104
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 296
SaqAI TTAA 3 cut(s) 141, 255, 296
Sau3AI GATC 2 cut(s) 150, 171
Sau96I GGNCC 1 cut(s) 104
ScrFI CCNGG 2 cut(s) 103, 108
SduI GDGCHC 2 cut(s) 56, 195
SetI ASST 6 cut(s) 36, 45, 67, 85, 121, 255
SfaNI GCATC 1 cut(s) 252
SfoI GGCGCC 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 296
SpeI ACTAGT 1 cut(s) 92
SsiI CCGC 3 cut(s) 157, 188, 204
SspDI GGCGCC 1 cut(s) 98
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 101, 106
TaqI TCGA 2 cut(s) 89, 170
Tru1I TTAA 3 cut(s) 141, 255, 296
Tru9I TTAA 3 cut(s) 141, 255, 296
TspDTI ATGAA 1 cut(s) 75
TspGWI ACGGA 3 cut(s) 7, 14, 136
Van91I CCANNNNNTGG 1 cut(s) 265
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.