Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0009447

Physical Location & Seq

Genomic Coordinates Reverse (-)

19125693 .. 19129788

Gene Structure 4096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0215600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGAATGCTCTTGCAGCCACCAACCGCAATTTTCGCCATGCAGCTCGCATTCTTGGGCTGGATGAGAAGCTTGAGAAGAGTCTTTTGATTCCCTTCAGAGAAATCAAAGTTGAGTGTACTATTCCAAAAGATGATGGCAGTCTGGTTTCCTATGTGGGATTTAGAATCCAACATGACAATGCTCGTGGCCCAATGAAAGGAGGAATTCGTTACCATCCTGAGGTTGACCCGGATGAAGTGAATGCTCTAGCTCAACTAATGACATGGAAGACAGCTGTGGCAAATATTCCTTATGGGGGAGCTAAGGGTGGGATTGGCTGCAACCCGAGGGACCTGAGTATCAGCGAGTTAGAACGTTTGACTCGTGTTTTTACTCAGAGGATCCATGATCTCATCGGAATTCACAGGGATGTTCCTGCCCCTGACATGGGAACAAATTCGCAGACAATGGCTTGGATTCTTGATGAGTACTCAAAGTTTCATGGGCATTCACCTGCAGTTGTGACAGGAAAACCTATTGATCTTGGGGGTTCACTTGGAAGGGAGTCTGCAACTGGACTTGGGGTGGTTTTTGCAACAGAAGCTGTACTTGCTGAGTATGGGAAGTCAATTTCTGGCTTGAAGTTTGTTATACAGGGCTTTGGAAATGTGGGCTCATGGGCAGCCAAGTTGATCCATGATAGAGGGGGTCATGTCATTGCTGTTAGTGACATCAGTGGTGCAATTAGGAACACAAGTGGAATTGATATCCCAGCTCTACTGAAACACAAAGAGAGCAATGCAAATTTGAAGGAATTCCAAGGTGCAGAGGCTATGGACCCAAATGACTTGCTTCTTCACGAATGTGATGTTCTCATTCCATGTGCCTTAGGAGGGGTCATTAACAAGGATAATGCTGCTGATGTTAAGGCAAAGTTCATTATAGAGGCTGCAAACCACCCCACTGACCCTGAAGCTGATGAGATATTGTCCAAGAAGGGAGTTGTTATTCTCCCTGACATATATGCAAATGCTGGTGGTGTGACTGTGAGCTACTTTGAATGGGTTCAGAATATTCAAGGCTTTATGTGGGAAGAAGAGAAAGTAAACTGTGAGCTTAAAAGGTACATGCAGAAAGCTTTCCTTGACATCAAGAGTATGTGTCAAACTCATGACTGCAACTTGCGAATGGGAGCTTTTACCCTTGGGGTGAACCGGGTTGCACGCGCTACCCTCTTGAGGGGCTGGGAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

411

Amino Acids

44.84

Weight (kDa)

6.13

Isoelectric Point (pI)

23.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELFV_dehydrog_N	PF02812	33 - 159	7.6e-50	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
ELFV_dehydrog	PF00208	176 - 408	3.4e-81	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04795 AT5G35732 AT5G35732
fragaria_vesca	FvH4_6g41440
malus_domestica	MD09G1119700.v1.1 MD17G1110500.v1.1
prunus_persica	Prupe.3G204400_v2.0.a1
pyrus_communis	pycom09g04450 pycom17g10280
rosa_chinensis	RchiOBHm_Chr2g0156971
rosa_multiflora	Rmu_ssc0000408.1_g000011
rosa_roxburghii	Rroxscaffold_2G00092540
rosa_rugosa	Rorug01G0059900 Rorug02G0457400 Rorug07G0215600
rosa_samantha	Rh1BG061300 Rh2AG523100 Rh2BG536300 Rh2CG508000 Rh2DG545300 Rh7BG348900
rosa_wichuraiana	Rw2G043180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	502
Acc36I	ACCTGC	1 cut(s)	502
AccII	CGCG	1 cut(s)	1206
AciI	CCGC	1 cut(s)	25
AclI	AACGTT	1 cut(s)	355
AclWI	GGATC	3 cut(s)	376, 389, 667
AcsI	RAATTY	5 cut(s)	204, 399, 436, 784, 794
AcuI	CTGAAG	2 cut(s)	79, 972
AfaI	GTAC	4 cut(s)	118, 470, 588, 1106
AfiI	CCNNNNNNNGG	8 cut(s)	197, 220, 296, 427, 428, 873, 1218, 1219
AgsI	TTSAA	4 cut(s)	622, 790, 1040, 1058
AleI	CACNNNNGTG	1 cut(s)	843
AlwI	GGATC	3 cut(s)	376, 389, 667
AlwNI	CAGNNNCTG	1 cut(s)	584
Ama87I	CYCGRG	1 cut(s)	325
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	6 cut(s)	14, 41, 318, 662, 896, 929
ApoI	RAATTY	5 cut(s)	204, 399, 436, 784, 794
Asp700I	GAANNNNTTC	4 cut(s)	436, 794, 1044, 1118
AspLEI	GCGC	1 cut(s)	1208
AspS9I	GGNCC	3 cut(s)	188, 331, 817
AsuC2I	CCSGG	2 cut(s)	230, 1196
AsuHPI	GGTGA	2 cut(s)	483, 1201
AvaI	CYCGRG	1 cut(s)	325
AvaII	GGWCC	2 cut(s)	331, 817
AxyI	CCTNAGG	2 cut(s)	219, 868
BaeI	ACNNNNGTAYC	2 cut(s)	322, 355
BamHI	GGATCC	1 cut(s)	381
BanII	GRGCYC	1 cut(s)	656
BauI	CACGAG	2 cut(s)	183, 363
BbsI	GAAGAC	1 cut(s)	275
BbvI	GCAGC	6 cut(s)	26, 53, 305, 674, 883, 916
BccI	CCATC	2 cut(s)	128, 222
BcnI	CCSGG	2 cut(s)	230, 1196
BfaI	CTAG	1 cut(s)	248
BfmI	CTRYAG	1 cut(s)	495
BfuAI	ACCTGC	1 cut(s)	502
BisI	GCNGC	6 cut(s)	15, 42, 319, 663, 897, 930
BlsI	GCNGC	6 cut(s)	16, 43, 320, 664, 898, 931
BmcAI	AGTACT	1 cut(s)	470
Bme1390I	CCNGG	2 cut(s)	230, 1196
Bme18I	GGWCC	2 cut(s)	331, 817
BmeT110I	CYCGRG	1 cut(s)	325
BmgT120I	GGNCC	3 cut(s)	188, 331, 817
BmiI	GGNNCC	3 cut(s)	332, 383, 819
BmrFI	CCNGG	2 cut(s)	230, 1196
BpiI	GAAGAC	1 cut(s)	275
Bpu10I	CCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	92
BpuMI	CCSGG	2 cut(s)	230, 1196
BsaJI	CCNNGG	3 cut(s)	326, 799, 1183
Bsc4I	CCNNNNNNNGG	8 cut(s)	197, 220, 296, 427, 428, 873, 1218, 1219
Bse1I	ACTGG	1 cut(s)	559
Bse21I	CCTNAGG	2 cut(s)	219, 868
Bse3DI	GCAATG	2 cut(s)	696, 784
BseDI	CCNNGG	3 cut(s)	326, 799, 1183
BseGI	GGATG	4 cut(s)	67, 214, 238, 415
BseLI	CCNNNNNNNGG	8 cut(s)	197, 220, 296, 427, 428, 873, 1218, 1219
BseMI	GCAATG	2 cut(s)	696, 784
BseMII	CTCAG	4 cut(s)	210, 326, 389, 585
BseNI	ACTGG	1 cut(s)	559
BseXI	GCAGC	6 cut(s)	26, 53, 305, 674, 883, 916
BseYI	CCCAGC	2 cut(s)	751, 1224
BsgI	GTGCAG	1 cut(s)	825
Bsh1236I	CGCG	1 cut(s)	1206
BshFI	GGCC	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	325
BsiSI	CCGG	2 cut(s)	230, 1195
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	8 cut(s)	197, 220, 296, 427, 428, 873, 1218, 1219
BsmFI	GGGAC	1 cut(s)	344
BsmI	GAATGC	4 cut(s)	10, 48, 247, 487
BsnI	GGCC	1 cut(s)	189
BsoBI	CYCGRG	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	656
Bsp143I	GATC	4 cut(s)	381, 388, 520, 672
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	4 cut(s)	211, 327, 388, 586
BspFNI	CGCG	1 cut(s)	1206
BspHI	TCATGA	1 cut(s)	1150
BspLI	GGNNCC	3 cut(s)	332, 383, 819
BspMAI	CTGCAG	1 cut(s)	499
BspMI	ACCTGC	1 cut(s)	502
BspPI	GGATC	3 cut(s)	376, 389, 667
BsrDI	GCAATG	2 cut(s)	696, 784
BsrI	ACTGG	1 cut(s)	559
BssECI	CCNNGG	3 cut(s)	326, 799, 1183
BssMI	GATC	4 cut(s)	381, 388, 520, 672
BssSI	CACGAG	2 cut(s)	183, 363
BssT1I	CCWWGG	2 cut(s)	799, 1183
Bst2BI	CACGAG	2 cut(s)	183, 363
Bst4CI	ACNGT	2 cut(s)	1027, 1091
Bst6I	CTCTTC	2 cut(s)	71, 1071
BstC8I	GCNNGC	2 cut(s)	46, 1204
BstDEI	CTNAG	6 cut(s)	219, 303, 335, 375, 594, 868
BstF5I	GGATG	4 cut(s)	67, 214, 238, 415
BstFNI	CGCG	1 cut(s)	1206
BstHHI	GCGC	1 cut(s)	1208
BstKTI	GATC	4 cut(s)	384, 391, 523, 675
BstMBI	GATC	4 cut(s)	381, 388, 520, 672
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 33, 581, 590
BstNSI	RCATGY	1 cut(s)	1111
BstSCI	CCNGG	2 cut(s)	228, 1194
BstSFI	CTRYAG	1 cut(s)	495
BstUI	CGCG	1 cut(s)	1206
BstV1I	GCAGC	6 cut(s)	26, 53, 305, 674, 883, 916
BstV2I	GAAGAC	1 cut(s)	275
BstX2I	RGATCY	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	381
Bsu36I	CCTNAGG	2 cut(s)	219, 868
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	4 cut(s)	67, 214, 238, 415
BtsIMutI	CAGTG	2 cut(s)	721, 942
BveI	ACCTGC	1 cut(s)	502
Cac8I	GCNNGC	2 cut(s)	46, 1204
CaiI	CAGNNNCTG	1 cut(s)	584
CciI	TCATGA	1 cut(s)	1150
CfoI	GCGC	1 cut(s)	1208
Cfr13I	GGNCC	3 cut(s)	188, 331, 817
Csp6I	GTAC	4 cut(s)	117, 469, 587, 1105
CspCI	CAANNNNNGTGG	2 cut(s)	166, 201
CviQI	GTAC	4 cut(s)	117, 469, 587, 1105
DdeI	CTNAG	6 cut(s)	219, 303, 335, 375, 594, 868
DpnI	GATC	4 cut(s)	383, 390, 522, 674
DpnII	GATC	4 cut(s)	381, 388, 520, 672
Eam1104I	CTCTTC	2 cut(s)	71, 1071
EarI	CTCTTC	2 cut(s)	71, 1071
Eco130I	CCWWGG	2 cut(s)	799, 1183
Eco24I	GRGCYC	1 cut(s)	656
Eco32I	GATATC	1 cut(s)	748
Eco47I	GGWCC	2 cut(s)	331, 817
Eco57I	CTGAAG	2 cut(s)	79, 972
Eco81I	CCTNAGG	2 cut(s)	219, 868
Eco88I	CYCGRG	1 cut(s)	325
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRI	GAATTC	3 cut(s)	204, 399, 794
EcoRV	GATATC	1 cut(s)	748
EcoT14I	CCWWGG	2 cut(s)	799, 1183
EcoT38I	GRGCYC	1 cut(s)	656
ErhI	CCWWGG	2 cut(s)	799, 1183
FalI	AAGNNNNNCTT	4 cut(s)	573, 605, 1107, 1139
FaqI	GGGAC	1 cut(s)	344
Fnu4HI	GCNGC	6 cut(s)	15, 42, 319, 663, 897, 930
FokI	GGATG	4 cut(s)	74, 201, 245, 422
FriOI	GRGCYC	1 cut(s)	656
Fsp4HI	GCNGC	6 cut(s)	15, 42, 319, 663, 897, 930
FspBI	CTAG	1 cut(s)	248
GlaI	GCGC	1 cut(s)	1207
GluI	GCNGC	6 cut(s)	15, 42, 319, 663, 897, 930
GsaI	CCCAGC	2 cut(s)	755, 1228
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	2 cut(s)	230, 1195
HhaI	GCGC	1 cut(s)	1208
Hin6I	GCGC	1 cut(s)	1206
HinP1I	GCGC	1 cut(s)	1206
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HindIII	AAGCTT	2 cut(s)	68, 1116
HinfI	GANTC	6 cut(s)	79, 88, 165, 361, 457, 545
HpaII	CCGG	2 cut(s)	230, 1195
HphI	GGTGA	2 cut(s)	483, 1201
Hpy166II	GTNNAC	5 cut(s)	117, 226, 533, 1087, 1192
Hpy188I	TCNGA	4 cut(s)	98, 378, 398, 1050
Hpy188III	TCNNGA	6 cut(s)	218, 461, 839, 1132, 1151, 1216
Hpy8I	GTNNAC	5 cut(s)	117, 226, 533, 1087, 1192
HpyAV	CCTTC	4 cut(s)	103, 534, 784, 970
HpyCH4III	ACNGT	2 cut(s)	1027, 1091
HpyCH4IV	ACGT	1 cut(s)	355
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 33, 581, 590
HpyF3I	CTNAG	6 cut(s)	219, 303, 335, 375, 594, 868
HpySE526I	ACGT	1 cut(s)	355
HspAI	GCGC	1 cut(s)	1206
Kzo9I	GATC	4 cut(s)	381, 388, 520, 672
LmnI	GCTCC	2 cut(s)	299, 1172
Lsp1109I	GCAGC	6 cut(s)	26, 53, 305, 674, 883, 916
MaeI	CTAG	1 cut(s)	248
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	4 cut(s)	209, 502, 707, 1021
MalI	GATC	4 cut(s)	383, 390, 522, 674
MboI	GATC	4 cut(s)	381, 388, 520, 672
MboII	GAAGA	5 cut(s)	88, 280, 827, 1085, 1088
MflI	RGATCY	1 cut(s)	381
MhlI	GDGCHC	1 cut(s)	656
MluCI	AATT	9 cut(s)	28, 204, 399, 436, 609, 723, 741, 784, 794
MlyI	GAGTC	3 cut(s)	88, 355, 554
MmeI	TCCRAC	1 cut(s)	193
MroXI	GAANNNNTTC	4 cut(s)	436, 794, 1044, 1118
MseI	TTAA	3 cut(s)	882, 906, 1098
MslI	CAYNNNNRTG	3 cut(s)	177, 408, 843
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	2 cut(s)	230, 1195
MspR9I	CCNGG	2 cut(s)	230, 1196
Mva1269I	GAATGC	4 cut(s)	10, 48, 247, 487
MvnI	CGCG	1 cut(s)	1206
MwoI	GCNNNNNNNGC	4 cut(s)	14, 33, 581, 590
NciI	CCSGG	2 cut(s)	230, 1196
NdeII	GATC	4 cut(s)	381, 388, 520, 672
NlaIV	GGNNCC	3 cut(s)	332, 383, 819
NmuCI	GTSAC	3 cut(s)	502, 707, 1021
NspI	RCATGY	1 cut(s)	1111
OliI	CACNNNNGTG	1 cut(s)	843
PagI	TCATGA	1 cut(s)	1150
PaqCI	CACCTGC	1 cut(s)	502
PcsI	WCGNNNNNNNCGW	1 cut(s)	361
PctI	GAATGC	4 cut(s)	10, 48, 247, 487
PdmI	GAANNNNTTC	4 cut(s)	436, 794, 1044, 1118
PfeI	GAWTC	3 cut(s)	88, 165, 457
PkrI	GCNGC	6 cut(s)	16, 43, 320, 664, 898, 931
PleI	GAGTC	3 cut(s)	87, 355, 553
PpsI	GAGTC	3 cut(s)	87, 355, 553
PpuMI	RGGWCCY	1 cut(s)	331
Psp1406I	AACGTT	1 cut(s)	355
Psp5II	RGGWCCY	1 cut(s)	331
PspFI	CCCAGC	2 cut(s)	751, 1224
PspN4I	GGNNCC	3 cut(s)	332, 383, 819
PspPI	GGNCC	3 cut(s)	188, 331, 817
PspPPI	RGGWCCY	1 cut(s)	331
PstI	CTGCAG	1 cut(s)	499
PstNI	CAGNNNCTG	1 cut(s)	584
PsuI	RGATCY	1 cut(s)	381
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	4 cut(s)	118, 470, 588, 1106
RsaNI	GTAC	4 cut(s)	117, 469, 587, 1105
RseI	CAYNNNNRTG	3 cut(s)	177, 408, 843
SaqAI	TTAA	3 cut(s)	882, 906, 1098
SatI	GCNGC	6 cut(s)	15, 42, 319, 663, 897, 930
Sau3AI	GATC	4 cut(s)	381, 388, 520, 672
Sau96I	GGNCC	3 cut(s)	188, 331, 817
ScaI	AGTACT	1 cut(s)	470
SchI	GAGTC	3 cut(s)	88, 355, 554
ScrFI	CCNGG	2 cut(s)	230, 1196
SduI	GDGCHC	1 cut(s)	656
SfcI	CTRYAG	1 cut(s)	495
SinI	GGWCC	2 cut(s)	331, 817
SmiMI	CAYNNNNRTG	3 cut(s)	177, 408, 843
SmlI	CTYRAG	2 cut(s)	71, 1216
SmoI	CTYRAG	2 cut(s)	71, 1216
Sse9I	AATT	9 cut(s)	28, 204, 399, 436, 609, 723, 741, 784, 794
SsiI	CCGC	1 cut(s)	25
SspI	AATATT	2 cut(s)	286, 1054
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	2 cut(s)	228, 1194
StyI	CCWWGG	2 cut(s)	799, 1183
TaaI	ACNGT	2 cut(s)	1027, 1091
TaiI	ACGT	1 cut(s)	358
TasI	AATT	9 cut(s)	28, 204, 399, 436, 609, 723, 741, 784, 794
TatI	WGTACW	3 cut(s)	116, 468, 586
TfiI	GAWTC	3 cut(s)	88, 165, 457
Tru1I	TTAA	3 cut(s)	882, 906, 1098
Tru9I	TTAA	3 cut(s)	882, 906, 1098
TscAI	CASTG	2 cut(s)	721, 949
TseFI	GTSAC	3 cut(s)	502, 707, 1021
TseI	GCWGC	6 cut(s)	14, 41, 318, 662, 896, 929
Tsp45I	GTSAC	3 cut(s)	502, 707, 1021
TspDTI	ATGAA	5 cut(s)	17, 209, 249, 470, 907
TspRI	CASTG	2 cut(s)	721, 949
VpaK11BI	GGWCC	2 cut(s)	331, 817
XapI	RAATTY	5 cut(s)	204, 399, 436, 784, 794
XceI	RCATGY	1 cut(s)	1111
XmnI	GAANNNNTTC	4 cut(s)	436, 794, 1044, 1118
XspI	CTAG	1 cut(s)	248
ZrmI	AGTACT	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.