Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000408.1

Orthogroup ID

OG0009447

Physical Location & Seq

Genomic Coordinates Reverse (-)

54923 .. 55225

Gene Structure 303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000408.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgaggcaaaatctccaaaacatgaggaaaagccccagagtagcagatgagagcatggttaacataggaggcgggaacttggcagtagaattgccaattataagaagatcatcatcccgcggttggaaaggattttcggttatagttagcgttgtgatcctgccattttcggttctttcttgcttctctcagcctcatgttcatggcgctgacggggtttgggcgtcgggtgattttgcgcagataacggagatgaatcatctaatggtaagtgacagcatgcgctatgccatcttgatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

100

Amino Acids

11.03

Weight (kDa)

9.18

Isoelectric Point (pI)

55.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04795 AT5G35732 AT5G35732
fragaria_vesca	FvH4_6g41440
malus_domestica	MD09G1119700.v1.1 MD17G1110500.v1.1
prunus_persica	Prupe.3G204400_v2.0.a1
pyrus_communis	pycom09g04450 pycom17g10280
rosa_chinensis	RchiOBHm_Chr2g0156971
rosa_multiflora	Rmu_ssc0000408.1_g000011
rosa_roxburghii	Rroxscaffold_2G00092540
rosa_rugosa	Rorug01G0059900 Rorug02G0457400 Rorug07G0215600
rosa_samantha	Rh1BG061300 Rh2AG523100 Rh2BG536300 Rh2CG508000 Rh2DG545300 Rh7BG348900
rosa_wichuraiana	Rw2G043180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	101
Acc16I	TGCGCA	1 cut(s)	240
AccII	CGCG	1 cut(s)	120
AciI	CCGC	3 cut(s)	72, 118, 120
AclWI	GGATC	1 cut(s)	151
AcyI	GRCGYC	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	123
AlwI	GGATC	1 cut(s)	151
AspLEI	GCGC	3 cut(s)	209, 241, 285
AsuHPI	GGTGA	1 cut(s)	242
BccI	CCATC	1 cut(s)	299
BfoI	RGCGCY	1 cut(s)	210
BsaBI	GATNNNNATC	1 cut(s)	112
BsaHI	GRCGYC	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse8I	GATNNNNATC	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	1 cut(s)	113
BseJI	GATNNNNATC	1 cut(s)	112
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	203
Bsh1236I	CGCG	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	107, 156
BspACI	CCGC	3 cut(s)	72, 118, 120
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	120
BspPI	GGATC	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	2 cut(s)	107, 156
BssNI	GRCGYC	1 cut(s)	224
BstACI	GRCGYC	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	281
BstDEI	CTNAG	1 cut(s)	189
BstDSI	CCRYGG	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	113
BstFNI	CGCG	1 cut(s)	120
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	3 cut(s)	209, 241, 285
BstKTI	GATC	2 cut(s)	110, 159
BstMBI	GATC	2 cut(s)	107, 156
BstNSI	RCATGY	1 cut(s)	283
BstUI	CGCG	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	113
Cac8I	GCNNGC	1 cut(s)	281
CfoI	GCGC	3 cut(s)	209, 241, 285
Cfr42I	CCGCGG	1 cut(s)	121
CseI	GACGC	1 cut(s)	213
CviAII	CATG	5 cut(s)	22, 55, 197, 203, 280
CviJI	RGCY	2 cut(s)	33, 193
CviKI_1	RGCY	2 cut(s)	33, 193
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	2 cut(s)	109, 158
DpnII	GATC	2 cut(s)	107, 156
FaeI	CATG	5 cut(s)	25, 58, 200, 206, 283
FaiI	YATR	9 cut(s)	23, 56, 65, 101, 143, 198, 204, 281, 288
FatI	CATG	5 cut(s)	21, 54, 196, 202, 279
FauI	CCCGC	2 cut(s)	65, 125
FokI	GGATG	1 cut(s)	100
FspI	TGCGCA	1 cut(s)	240
GlaI	GCGC	3 cut(s)	208, 240, 284
HaeII	RGCGCY	1 cut(s)	210
HgaI	GACGC	1 cut(s)	213
HhaI	GCGC	3 cut(s)	209, 241, 285
Hin1I	GRCGYC	1 cut(s)	224
Hin1II	CATG	5 cut(s)	25, 58, 200, 206, 283
Hin6I	GCGC	3 cut(s)	207, 239, 283
HinP1I	GCGC	3 cut(s)	207, 239, 283
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	1 cut(s)	256
HpaI	GTTAAC	1 cut(s)	61
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188III	TCNNGA	1 cut(s)	295
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	1 cut(s)	229
HpyF3I	CTNAG	1 cut(s)	189
Hsp92I	GRCGYC	1 cut(s)	224
Hsp92II	CATG	5 cut(s)	25, 58, 200, 206, 283
HspAI	GCGC	3 cut(s)	207, 239, 283
KspAI	GTTAAC	1 cut(s)	61
KspI	CCGCGG	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	107, 156
LpnPI	CCDG	2 cut(s)	49, 173
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	2 cut(s)	109, 158
MboI	GATC	2 cut(s)	107, 156
MboII	GAAGA	1 cut(s)	117
MluCI	AATT	2 cut(s)	89, 96
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	3 cut(s)	18, 62, 204
MseI	TTAA	1 cut(s)	60
MslI	CAYNNNNRTG	2 cut(s)	201, 296
MspA1I	CMGCKG	1 cut(s)	120
MvnI	CGCG	1 cut(s)	120
NdeII	GATC	2 cut(s)	107, 156
NlaIII	CATG	5 cut(s)	25, 58, 200, 206, 283
NmuCI	GTSAC	1 cut(s)	272
NsbI	TGCGCA	1 cut(s)	240
NspI	RCATGY	1 cut(s)	283
PaeI	GCATGC	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	256
PsiI	TTATAA	1 cut(s)	101
RseI	CAYNNNNRTG	2 cut(s)	201, 296
SacII	CCGCGG	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	60
Sau3AI	GATC	2 cut(s)	107, 156
Sfr303I	CCGCGG	1 cut(s)	121
SgrBI	CCGCGG	1 cut(s)	121
SmiMI	CAYNNNNRTG	2 cut(s)	201, 296
SphI	GCATGC	1 cut(s)	283
Sse9I	AATT	2 cut(s)	89, 96
SsiI	CCGC	3 cut(s)	72, 118, 120
TasI	AATT	2 cut(s)	89, 96
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TseFI	GTSAC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	2 cut(s)	191, 269
TspGWI	ACGGA	1 cut(s)	263
XceI	RCATGY	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.