Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009447

Physical Location & Seq

Genomic Coordinates Reverse (-)

9902241 .. 9902890

Gene Structure 650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0059900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTGGAAGTTCATGGTTCAAATTGCTACCCAGTTGAGCTGGTTATTCAACTATTTGCTTTTCTGTTCGTTTGCCAAACCCTACTATGAGTTTGAATTACCTGCAAAAGCTATAGAGACTCTTAGTAGTACAGTCCACTACAAAAGCTCCAACCCTGCTGTGAGGTGCTCTGAAGAAGAATGTGCTGTGTGTCTATGCAAAATTGAGGAAGGAGAAGAGATGAGAGAATTGAGATGTGCTCATCTCTTTCATAAAACATGCTTGGACCGTTGGACAGGTCTTAAACATGTCACGTGTCCCCTTTGCCGGAGTTTCCTAGCTCCCCCAGTAAGTTCAGAATCCCGGTTTCAAATTGAAGTGCTTCATTTCAGATTCTGCTCTTTCCAGTCGGATAAAGATCGTGATACATGGTGCATGGTTGTGCTAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

16.8

Weight (kDa)

6.5

Isoelectric Point (pI)

61.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	60 - 103	5e-12	Ring finger domain
zf-RING_11	PF17123	60 - 88	5.7e-09	RING-like zinc finger
zf-C3HC4	PF00097	61 - 102	7.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04795 AT5G35732 AT5G35732
fragaria_vesca	FvH4_6g41440
malus_domestica	MD09G1119700.v1.1 MD17G1110500.v1.1
prunus_persica	Prupe.3G204400_v2.0.a1
pyrus_communis	pycom09g04450 pycom17g10280
rosa_chinensis	RchiOBHm_Chr2g0156971
rosa_multiflora	Rmu_ssc0000408.1_g000011
rosa_roxburghii	Rroxscaffold_2G00092540
rosa_rugosa	Rorug01G0059900 Rorug02G0457400 Rorug07G0215600
rosa_samantha	Rh1BG061300 Rh2AG523100 Rh2BG536300 Rh2CG508000 Rh2DG545300 Rh7BG348900
rosa_wichuraiana	Rw2G043180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	192
AcvI	CACGTG	1 cut(s)	294
AfaI	GTAC	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	306
AflIII	ACRYGT	2 cut(s)	286, 293
AgsI	TTSAA	5 cut(s)	20, 49, 95, 350, 356
AluBI	AGCT	4 cut(s)	39, 110, 147, 320
AluI	AGCT	4 cut(s)	39, 110, 147, 320
Alw21I	GWGCWC	2 cut(s)	170, 241
Alw26I	GTCTC	1 cut(s)	110
AlwNI	CAGNNNCTG	1 cut(s)	375
Asp700I	GAANNNNTTC	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	265
AsuC2I	CCSGG	1 cut(s)	343
AvaII	GGWCC	1 cut(s)	265
BbrPI	CACGTG	1 cut(s)	294
Bbv12I	GWGCWC	2 cut(s)	170, 241
BcnI	CCSGG	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	2 cut(s)	317, 430
BfmI	CTRYAG	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	343
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	343
BmrI	ACTGGG	2 cut(s)	25, 320
BmuI	ACTGGG	2 cut(s)	25, 320
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
BpuMI	CCSGG	1 cut(s)	343
BsaAI	YACGTR	1 cut(s)	294
BsaBI	GATNNNNATC	1 cut(s)	396
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse1I	ACTGG	3 cut(s)	31, 326, 385
Bse8I	GATNNNNATC	1 cut(s)	396
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseNI	ACTGG	3 cut(s)	31, 326, 385
BsiHKAI	GWGCWC	2 cut(s)	170, 241
BsiSI	CCGG	2 cut(s)	307, 343
BslFI	GGGAC	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmAI	GTCTC	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	282
Bsp1286I	GDGCHC	2 cut(s)	170, 241
Bsp143I	GATC	1 cut(s)	397
BspMI	ACCTGC	1 cut(s)	109
BsrI	ACTGG	3 cut(s)	31, 326, 385
BssMI	GATC	1 cut(s)	397
Bst4CI	ACNGT	2 cut(s)	133, 269
Bst6I	CTCTTC	1 cut(s)	210
BstBAI	YACGTR	1 cut(s)	294
BstDEI	CTNAG	1 cut(s)	122
BstKTI	GATC	1 cut(s)	400
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	1 cut(s)	397
BstNSI	RCATGY	2 cut(s)	261, 290
BstSCI	CCNGG	1 cut(s)	341
BstSFI	CTRYAG	1 cut(s)	111
BveI	ACCTGC	1 cut(s)	109
CaiI	CAGNNNCTG	1 cut(s)	375
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	129
CviAII	CATG	5 cut(s)	13, 258, 287, 408, 415
CviJI	RGCY	4 cut(s)	39, 110, 147, 320
CviKI_1	RGCY	4 cut(s)	39, 110, 147, 320
CviQI	GTAC	1 cut(s)	129
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	1 cut(s)	399
DpnII	GATC	1 cut(s)	397
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	192
Eco72I	CACGTG	1 cut(s)	294
FaeI	CATG	5 cut(s)	16, 261, 290, 411, 418
FaiI	YATR	9 cut(s)	14, 87, 113, 196, 252, 259, 288, 409, 416
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	5 cut(s)	12, 257, 286, 407, 414
FspBI	CTAG	2 cut(s)	317, 430
HapII	CCGG	2 cut(s)	307, 343
Hin1II	CATG	5 cut(s)	16, 261, 290, 411, 418
HinfI	GANTC	3 cut(s)	118, 338, 372
HpaII	CCGG	2 cut(s)	307, 343
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	4 cut(s)	172, 337, 371, 391
Hpy188III	TCNNGA	1 cut(s)	401
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	2 cut(s)	133, 269
HpyCH4IV	ACGT	1 cut(s)	293
HpyCH4V	TGCA	3 cut(s)	104, 198, 414
HpyF3I	CTNAG	1 cut(s)	122
HpySE526I	ACGT	1 cut(s)	293
Hsp92II	CATG	5 cut(s)	16, 261, 290, 411, 418
Kzo9I	GATC	1 cut(s)	397
LmnI	GCTCC	2 cut(s)	152, 325
LpnPI	CCDG	9 cut(s)	25, 44, 114, 168, 261, 320, 339, 356, 398
MaeI	CTAG	2 cut(s)	317, 430
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	1 cut(s)	399
MboI	GATC	1 cut(s)	397
MboII	GAAGA	3 cut(s)	185, 188, 227
MhlI	GDGCHC	2 cut(s)	170, 241
MluCI	AATT	5 cut(s)	21, 95, 201, 227, 351
MlyI	GAGTC	1 cut(s)	112
MmeI	TCCRAC	3 cut(s)	174, 251, 369
MnlI	CCTC	2 cut(s)	156, 199
MroXI	GAANNNNTTC	1 cut(s)	360
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	419
MspI	CCGG	2 cut(s)	307, 343
MspR9I	CCNGG	1 cut(s)	343
NciI	CCSGG	1 cut(s)	343
NdeII	GATC	1 cut(s)	397
NlaIII	CATG	5 cut(s)	16, 261, 290, 411, 418
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	2 cut(s)	261, 290
PciI	ACATGT	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	2 cut(s)	338, 372
PleI	GAGTC	1 cut(s)	112
PmaCI	CACGTG	1 cut(s)	294
PmlI	CACGTG	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	112
Ppu21I	YACGTR	1 cut(s)	294
PscI	ACATGT	1 cut(s)	286
PspCI	CACGTG	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	375
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
RseI	CAYNNNNRTG	1 cut(s)	419
SaqAI	TTAA	1 cut(s)	282
Sau3AI	GATC	1 cut(s)	397
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	1 cut(s)	112
ScrFI	CCNGG	1 cut(s)	343
SduI	GDGCHC	2 cut(s)	170, 241
SetI	ASST	8 cut(s)	41, 103, 112, 149, 167, 280, 296, 322
SfcI	CTRYAG	1 cut(s)	111
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	419
Sse9I	AATT	5 cut(s)	21, 95, 201, 227, 351
SspMI	CTAG	2 cut(s)	317, 430
StyD4I	CCNGG	1 cut(s)	341
TaaI	ACNGT	2 cut(s)	133, 269
TaiI	ACGT	1 cut(s)	296
TasI	AATT	5 cut(s)	21, 95, 201, 227, 351
TatI	WGTACW	1 cut(s)	128
TfiI	GAWTC	2 cut(s)	338, 372
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	239, 353
VpaK11BI	GGWCC	1 cut(s)	265
XceI	RCATGY	2 cut(s)	261, 290
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	2 cut(s)	317, 430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.