Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013344

Physical Location & Seq

Genomic Coordinates Reverse (-)

14641442 .. 14642513

Gene Structure 1072 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G37055.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGAGGAAGAGATGTCGAACCGTCGAGTATCAAATCGGACTCGTAAGGTCGCTACGAAGATGGCGGCGGCTCTTACAAGCAACGACAATCGAACTCAGGCTGCTATAGCTAGGCTAGAGGCTTTAGAGAACGATAATGGTGCTATTGAAGTGATAGATTTGAACGATGATGAAGAAGCTTCTCTTGATGAAGATGATGATCTCGGTTACTTACAGAAGAAGCAACACAAAGGATCAAAGCGTAAAACTCGACAAGCGAAAGCTTTAGAAGCTCGTAAAGCTCCTAAATCCTTCCTTGAGCTATTGCAAGAGGCAAATTTGGAGTCTTTACCGTCGCATGTACCGACTTACTTGAAAGCAGCAGTTGGACCTCCGAGTTCGTCTTCTCGTCGCTATTTTTGCTCGGTTTGTGGTTACATTGCAGGTTACAATTGTTGTTTATGTGGGATGAGGTTTTGTTCTATTCGTTGTCAAAATATTCACAAGGATACTCGTTGTCAGAAATTTGTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009909 GO:0009987 GO:0016043 GO:0019222 GO:0019899 GO:0031056 GO:0031063 GO:0031323 GO:0031399 GO:0031491 GO:0031974 GO:0031981 GO:0032268 GO:0032991 GO:0033043 GO:0033044 GO:0034728 GO:0040008 GO:0042742 GO:0042802 GO:0042826 GO:0043044 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043486 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0048580 GO:0048638 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051239 GO:0051246 GO:0051276 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0070013 GO:0070603 GO:0071824 GO:0071840 GO:0080090 GO:0090311 GO:0097346 GO:0098542 GO:1902275 GO:1902494 GO:1904949 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-HIT

Protein Analysis

171

Amino Acids

19.14

Weight (kDa)

8.61

Isoelectric Point (pI)

52.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-HIT	PF04438	131 - 158	1.1e-07	HIT zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Orthologous Genes (Group: OG0013344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37055
fragaria_vesca	FvH4_3g39740
malus_domestica	MD03G1056300.v1.1 MD11G1057500.v1.1
prunus_persica	Prupe.6G048500_v2.0.a1 Prupe.6G048500_v2.0.a1
pyrus_communis	pycom03g04460
rosa_chinensis	RchiOBHm_Chr5g0071621
rosa_laevigata	RLG00000036233
rosa_multiflora	Rmu_co7965106.1_g000001 Rmu_sc0005745.1_g000030
rosa_roxburghii	Rroxscaffold_1G00009560
rosa_rugosa	Rorug05G0413600
rosa_samantha	Rh5AG469600 Rh5BG489000 Rh5CG512900 Rh5DG499600
rosa_wichuraiana	Rw5G043630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	413
AciI	CCGC	2 cut(s)	65, 68
AclWI	GGATC	1 cut(s)	241
AcsI	RAATTY	2 cut(s)	316, 503
AfaI	GTAC	1 cut(s)	342
AgsI	TTSAA	3 cut(s)	149, 163, 355
AluBI	AGCT	6 cut(s)	110, 179, 263, 272, 281, 301
AluI	AGCT	6 cut(s)	110, 179, 263, 272, 281, 301
AlwI	GGATC	1 cut(s)	241
ApeKI	GCWGC	2 cut(s)	101, 359
ApoI	RAATTY	2 cut(s)	316, 503
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
AspS9I	GGNCC	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	375
BbvI	GCAGC	2 cut(s)	88, 371
BccI	CCATC	1 cut(s)	55
BcgI	CGANNNNNNTGC	2 cut(s)	122, 156
BciVI	GTATCC	1 cut(s)	481
BfaI	CTAG	2 cut(s)	111, 116
BfmI	CTRYAG	1 cut(s)	105
BfuAI	ACCTGC	1 cut(s)	413
BfuI	GTATCC	1 cut(s)	481
BisI	GCNGC	4 cut(s)	66, 69, 102, 360
BlsI	GCNGC	4 cut(s)	67, 70, 103, 361
Bme18I	GGWCC	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	368
BpiI	GAAGAC	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	317
BsaBI	GATNNNNATC	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	417
Bse8I	GATNNNNATC	1 cut(s)	198
BseGI	GGATG	1 cut(s)	453
BseJI	GATNNNNATC	1 cut(s)	198
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	1 cut(s)	110
BseXI	GCAGC	2 cut(s)	88, 371
Bsp143I	GATC	2 cut(s)	199, 233
BspACI	CCGC	2 cut(s)	65, 68
BspCNI	CTCAG	1 cut(s)	109
BspMI	ACCTGC	1 cut(s)	413
BspPI	GGATC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	417
BssMI	GATC	2 cut(s)	199, 233
Bst4CI	ACNGT	2 cut(s)	23, 333
Bst6I	CTCTTC	1 cut(s)	3
BstDEI	CTNAG	1 cut(s)	96
BstF5I	GGATG	1 cut(s)	453
BstKTI	GATC	2 cut(s)	202, 236
BstMBI	GATC	2 cut(s)	199, 233
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 269, 278, 399
BstNSI	RCATGY	1 cut(s)	341
BstSFI	CTRYAG	1 cut(s)	105
BstV1I	GCAGC	2 cut(s)	88, 371
BstV2I	GAAGAC	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	481
BtsCI	GGATG	1 cut(s)	453
BveI	ACCTGC	1 cut(s)	413
Cfr13I	GGNCC	1 cut(s)	368
Csp6I	GTAC	1 cut(s)	341
CviAII	CATG	1 cut(s)	338
CviQI	GTAC	1 cut(s)	341
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	2 cut(s)	201, 235
DpnII	GATC	2 cut(s)	199, 233
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	368
FaeI	CATG	1 cut(s)	341
FaiI	YATR	4 cut(s)	107, 339, 442, 514
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FatI	CATG	1 cut(s)	337
Fnu4HI	GCNGC	4 cut(s)	66, 69, 102, 360
FokI	GGATG	1 cut(s)	460
Fsp4HI	GCNGC	4 cut(s)	66, 69, 102, 360
FspBI	CTAG	2 cut(s)	111, 116
GluI	GCNGC	4 cut(s)	66, 69, 102, 360
Hin1II	CATG	1 cut(s)	341
HindIII	AAGCTT	2 cut(s)	177, 261
HinfI	GANTC	2 cut(s)	40, 323
Hpy188I	TCNGA	3 cut(s)	39, 375, 501
Hpy188III	TCNNGA	1 cut(s)	185
Hpy99I	CGWCG	3 cut(s)	27, 337, 393
HpyAV	CCTTC	1 cut(s)	301
HpyCH4III	ACNGT	2 cut(s)	23, 333
HpyCH4V	TGCA	3 cut(s)	307, 422, 512
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 269, 278, 399
HpyF3I	CTNAG	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	341
Kzo9I	GATC	2 cut(s)	199, 233
LmnI	GCTCC	1 cut(s)	286
LpnPI	CCDG	2 cut(s)	83, 408
Lsp1109I	GCAGC	2 cut(s)	88, 371
MaeI	CTAG	2 cut(s)	111, 116
MaeIII	GTNAC	3 cut(s)	206, 413, 425
MalI	GATC	2 cut(s)	201, 235
MboI	GATC	2 cut(s)	199, 233
MboII	GAAGA	6 cut(s)	20, 70, 185, 203, 229, 375
MfeI	CAATTG	1 cut(s)	430
MluCI	AATT	3 cut(s)	316, 430, 503
MlyI	GAGTC	2 cut(s)	34, 332
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	4 cut(s)	112, 304, 381, 444
MunI	CAATTG	1 cut(s)	430
MwoI	GCNNNNNNNGC	4 cut(s)	107, 269, 278, 399
NdeII	GATC	2 cut(s)	199, 233
NlaIII	CATG	1 cut(s)	341
NspI	RCATGY	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	1 cut(s)	341
PkrI	GCNGC	4 cut(s)	67, 70, 103, 361
PleI	GAGTC	2 cut(s)	34, 331
PpsI	GAGTC	2 cut(s)	34, 331
PspPI	GGNCC	1 cut(s)	368
RsaI	GTAC	1 cut(s)	342
RsaNI	GTAC	1 cut(s)	341
SatI	GCNGC	4 cut(s)	66, 69, 102, 360
Sau3AI	GATC	2 cut(s)	199, 233
Sau96I	GGNCC	1 cut(s)	368
SchI	GAGTC	2 cut(s)	34, 332
SfcI	CTRYAG	1 cut(s)	105
SinI	GGWCC	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	3 cut(s)	316, 430, 503
SsiI	CCGC	2 cut(s)	65, 68
SspI	AATATT	1 cut(s)	478
SspMI	CTAG	2 cut(s)	111, 116
TaaI	ACNGT	2 cut(s)	23, 333
TaqI	TCGA	4 cut(s)	17, 25, 91, 250
TasI	AATT	3 cut(s)	316, 430, 503
TauI	GCSGC	2 cut(s)	68, 71
TseI	GCWGC	2 cut(s)	101, 359
TspDTI	ATGAA	2 cut(s)	186, 204
VpaK11BI	GGWCC	1 cut(s)	368
XapI	RAATTY	2 cut(s)	316, 503
XceI	RCATGY	1 cut(s)	341
XspI	CTAG	2 cut(s)	111, 116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.