Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0013344

Physical Location & Seq

Genomic Coordinates Forward (+)

71589215 .. 71593702

Gene Structure 4488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG512900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGACGATGACGTGTCCGCCCCCTTCCGCCGATCCTCGAGTCGGAATCGTAAGGTCGCGTCGAAAATGGCTGCTGCCCTTATGAGCACTGATAACCGCACCCAGGCTGCCCTTGCTAGGCTTGAAGCTTTGGAAAACGACAATACTGGGTTGGAAACTGTGGAGGTTAATGACGACGATGAAGCTTCTCTTGATGATGAGGATCAAGGATATATACAAAAGAAGCAGCCTAAGGGCACCAAGCGTAAAACCCGGCAGGCAAAAGCTCTTGAGGCCAGGAAGGCACCCAGAACATTCCTTGAGCTTTTACATGAGCAGTGGGACCTCCAAGCTCTACCTCCCGTCGCCATTTCTGCACTGTTTGTGGTTCGGCTGCCAACTATACATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009909 GO:0009987 GO:0016043 GO:0019222 GO:0019899 GO:0031056 GO:0031063 GO:0031323 GO:0031399 GO:0031491 GO:0031974 GO:0031981 GO:0032268 GO:0032991 GO:0033043 GO:0033044 GO:0034728 GO:0040008 GO:0042742 GO:0042802 GO:0042826 GO:0043044 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043486 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0048580 GO:0048638 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051239 GO:0051246 GO:0051276 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0070013 GO:0070603 GO:0071824 GO:0071840 GO:0080090 GO:0090311 GO:0097346 GO:0098542 GO:1902275 GO:1902494 GO:1904949 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-HIT

Protein Analysis

130

Amino Acids

14.54

Weight (kDa)

6.13

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37055
fragaria_vesca	FvH4_3g39740
malus_domestica	MD03G1056300.v1.1 MD11G1057500.v1.1
prunus_persica	Prupe.6G048500_v2.0.a1 Prupe.6G048500_v2.0.a1
pyrus_communis	pycom03g04460
rosa_chinensis	RchiOBHm_Chr5g0071621
rosa_laevigata	RLG00000036233
rosa_multiflora	Rmu_co7965106.1_g000001 Rmu_sc0005745.1_g000030
rosa_roxburghii	Rroxscaffold_1G00009560
rosa_rugosa	Rorug05G0413600
rosa_samantha	Rh5AG469600 Rh5BG489000 Rh5CG512900 Rh5DG499600
rosa_wichuraiana	Rw5G043630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	236, 283
AccII	CGCG	1 cut(s)	59
AciI	CCGC	3 cut(s)	18, 28, 97
AclWI	GGATC	2 cut(s)	27, 210
AfiI	CCNNNNNNNGG	3 cut(s)	42, 103, 117
AflIII	ACRYGT	2 cut(s)	12, 385
AgsI	TTSAA	1 cut(s)	125
AjiI	CACGTC	1 cut(s)	13
AjnI	CCWGG	2 cut(s)	102, 275
AluBI	AGCT	5 cut(s)	128, 185, 266, 304, 332
AluI	AGCT	5 cut(s)	128, 185, 266, 304, 332
Alw21I	GWGCWC	1 cut(s)	89
AlwI	GGATC	2 cut(s)	27, 210
Ama87I	CYCGRG	1 cut(s)	37
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	5 cut(s)	71, 74, 107, 226, 373
AspS9I	GGNCC	1 cut(s)	322
AsuC2I	CCSGG	1 cut(s)	253
AvaI	CYCGRG	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	322
AxyI	CCTNAGG	1 cut(s)	231
BaeGI	GKGCMC	1 cut(s)	239
BanI	GGYRCC	2 cut(s)	236, 283
Bbv12I	GWGCWC	1 cut(s)	89
BbvI	GCAGC	5 cut(s)	58, 61, 94, 238, 360
BciT130I	CCWGG	2 cut(s)	104, 277
BcnI	CCSGG	1 cut(s)	253
BfaI	CTAG	1 cut(s)	117
BglI	GCCNNNNNGGC	1 cut(s)	281
BisI	GCNGC	5 cut(s)	72, 75, 108, 227, 374
BlsI	GCNGC	5 cut(s)	73, 76, 109, 228, 375
Bme1390I	CCNGG	3 cut(s)	104, 253, 277
Bme18I	GGWCC	1 cut(s)	322
BmeT110I	CYCGRG	1 cut(s)	37
BmgBI	CACGTC	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	3 cut(s)	238, 285, 323
BmrFI	CCNGG	3 cut(s)	104, 253, 277
BmrI	ACTGGG	1 cut(s)	156
BmuI	ACTGGG	1 cut(s)	156
BpuEI	CTTGAG	2 cut(s)	290, 320
BpuMI	CCSGG	1 cut(s)	253
BsaBI	GATNNNNATC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 103, 117
Bse1I	ACTGG	1 cut(s)	151
Bse21I	CCTNAGG	1 cut(s)	231
Bse8I	GATNNNNATC	1 cut(s)	201
BseBI	CCWGG	2 cut(s)	104, 277
BseDI	CCNNGG	1 cut(s)	102
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	3 cut(s)	42, 103, 117
BseNI	ACTGG	1 cut(s)	151
BseSI	GKGCMC	1 cut(s)	239
BseXI	GCAGC	5 cut(s)	58, 61, 94, 238, 360
BsgI	GTGCAG	1 cut(s)	339
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	1 cut(s)	275
BshNI	GGYRCC	2 cut(s)	236, 283
BsiHKAI	GWGCWC	1 cut(s)	89
BsiHKCI	CYCGRG	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	253
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	3 cut(s)	42, 103, 117
BsmFI	GGGAC	1 cut(s)	335
BsnI	GGCC	1 cut(s)	275
BsoBI	CYCGRG	1 cut(s)	37
Bsp1286I	GDGCHC	2 cut(s)	89, 239
Bsp143I	GATC	2 cut(s)	32, 202
BspACI	CCGC	3 cut(s)	18, 28, 97
BspANI	GGCC	1 cut(s)	275
BspFNI	CGCG	1 cut(s)	59
BspLI	GGNNCC	3 cut(s)	238, 285, 323
BspPI	GGATC	2 cut(s)	27, 210
BspT107I	GGYRCC	2 cut(s)	236, 283
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	2 cut(s)	32, 202
Bst2UI	CCWGG	2 cut(s)	104, 277
Bst4CI	ACNGT	2 cut(s)	160, 360
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	1 cut(s)	231
BstFNI	CGCG	1 cut(s)	59
BstKTI	GATC	2 cut(s)	35, 205
BstMBI	GATC	2 cut(s)	32, 202
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 272, 281, 353
BstNI	CCWGG	2 cut(s)	104, 277
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	3 cut(s)	102, 251, 275
BstSLI	GKGCMC	1 cut(s)	239
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	5 cut(s)	58, 61, 94, 238, 360
Bsu36I	CCTNAGG	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	275
BtrI	CACGTC	1 cut(s)	13
BtsI	GCAGTG	1 cut(s)	323
BtsIMutI	CAGTG	3 cut(s)	87, 323, 356
Cac8I	GCNNGC	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	322
CseI	GACGC	1 cut(s)	48
CviAII	CATG	2 cut(s)	311, 386
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	2 cut(s)	34, 204
DpnII	GATC	2 cut(s)	32, 202
EciI	GGCGGA	2 cut(s)	7, 17
Eco47I	GGWCC	1 cut(s)	322
Eco81I	CCTNAGG	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	37
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRII	CCWGG	2 cut(s)	102, 275
FaeI	CATG	2 cut(s)	314, 389
FaiI	YATR	6 cut(s)	83, 213, 215, 312, 383, 387
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	2 cut(s)	310, 385
Fnu4HI	GCNGC	5 cut(s)	72, 75, 108, 227, 374
Fsp4HI	GCNGC	5 cut(s)	72, 75, 108, 227, 374
FspBI	CTAG	1 cut(s)	117
GluI	GCNGC	5 cut(s)	72, 75, 108, 227, 374
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	1 cut(s)	253
HgaI	GACGC	1 cut(s)	48
Hin1II	CATG	2 cut(s)	314, 389
HindIII	AAGCTT	2 cut(s)	126, 183
HinfI	GANTC	2 cut(s)	40, 46
HpaII	CCGG	1 cut(s)	253
Hpy188I	TCNGA	1 cut(s)	45
Hpy188III	TCNNGA	2 cut(s)	191, 269
Hpy99I	CGWCG	3 cut(s)	64, 179, 347
HpyAV	CCTTC	2 cut(s)	34, 274
HpyCH4III	ACNGT	2 cut(s)	160, 360
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	1 cut(s)	356
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 272, 281, 353
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	2 cut(s)	314, 389
Kzo9I	GATC	2 cut(s)	32, 202
LpnPI	CCDG	8 cut(s)	89, 116, 132, 242, 262, 266, 289, 301
Lsp1109I	GCAGC	5 cut(s)	58, 61, 94, 238, 360
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	12
MalI	GATC	2 cut(s)	34, 204
MboI	GATC	2 cut(s)	32, 202
MhlI	GDGCHC	2 cut(s)	89, 239
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	2 cut(s)	23, 132
MnlI	CCTC	6 cut(s)	46, 157, 193, 265, 335, 348
MseI	TTAA	1 cut(s)	168
MspI	CCGG	1 cut(s)	253
MspR9I	CCNGG	3 cut(s)	104, 253, 277
MvaI	CCWGG	2 cut(s)	104, 277
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	4 cut(s)	113, 272, 281, 353
NciI	CCSGG	1 cut(s)	253
NdeII	GATC	2 cut(s)	32, 202
NlaIII	CATG	2 cut(s)	314, 389
NlaIV	GGNNCC	3 cut(s)	238, 285, 323
NspI	RCATGY	1 cut(s)	389
PaeR7I	CTCGAG	1 cut(s)	37
PciI	ACATGT	1 cut(s)	385
PfeI	GAWTC	1 cut(s)	46
PkrI	GCNGC	5 cut(s)	73, 76, 109, 228, 375
PleI	GAGTC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	48
PpuMI	RGGWCCY	1 cut(s)	322
PscI	ACATGT	1 cut(s)	385
Psp5II	RGGWCCY	1 cut(s)	322
Psp6I	CCWGG	2 cut(s)	102, 275
PspGI	CCWGG	2 cut(s)	102, 275
PspN4I	GGNNCC	3 cut(s)	238, 285, 323
PspPI	GGNCC	1 cut(s)	322
PspPPI	RGGWCCY	1 cut(s)	322
PspXI	VCTCGAGB	1 cut(s)	37
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	5 cut(s)	72, 75, 108, 227, 374
Sau3AI	GATC	2 cut(s)	32, 202
Sau96I	GGNCC	1 cut(s)	322
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	3 cut(s)	104, 253, 277
SduI	GDGCHC	2 cut(s)	89, 239
Sfr274I	CTCGAG	1 cut(s)	37
SinI	GGWCC	1 cut(s)	322
SlaI	CTCGAG	1 cut(s)	37
SmlI	CTYRAG	3 cut(s)	37, 269, 299
SmoI	CTYRAG	3 cut(s)	37, 269, 299
SsiI	CCGC	3 cut(s)	18, 28, 97
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	3 cut(s)	102, 251, 275
TaaI	ACNGT	2 cut(s)	160, 360
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	2 cut(s)	38, 62
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	3 cut(s)	94, 323, 363
TseI	GCWGC	5 cut(s)	71, 74, 107, 226, 373
TspDTI	ATGAA	1 cut(s)	195
TspRI	CASTG	3 cut(s)	94, 323, 363
VpaK11BI	GGWCC	1 cut(s)	322
XceI	RCATGY	1 cut(s)	389
XhoI	CTCGAG	1 cut(s)	37
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.