Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0013344

Physical Location & Seq

Genomic Coordinates Forward (+)

33702239 .. 33703877

Gene Structure 1639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g39740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGATGATGACGTGTCCGCCCCCTTCCGCCGGTCGTCGAGCCGGAATCGTAAGGTGGCTTCCAAAATGGCTGCCGCCCTTATGAGCACTGATAACCGCACCCAGGCTGCTCTTGCTAGACTTGAAGCTTTGGAAAATGACAATGCTGGGTTGGAAACTGTGGAGGTCAATGACGACGATGAGGCTTCTCTTGATGATGAGGATCAAGGATATATACAGAAGAAGCAGCCTAAAGGCACCAAGCGTAAAACCCGGCAGGCAAAAGCTCTTGAGGCCAGGAAGGCACCGAGGACATTCCTTGAGCTTTTACAAGAGGCAAATCTTGAATCTTTGCCGCCTCATGTCCCCTCCTATCTGAAGGCAGCAGTAGGACCTCCGAGCTCTACCTCCCGCCGCCATTTCTGCACTGTTTGTGGTTCGGCTACCAACTATACGTGTGTGAGGTGTGGTATGCGCTTCTGTTCGTGTCGTTGCCAGAATATCCATAATGATACTCGTTGTCAGAAATTTGTTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009909 GO:0009987 GO:0016043 GO:0019222 GO:0019899 GO:0031056 GO:0031063 GO:0031323 GO:0031399 GO:0031491 GO:0031974 GO:0031981 GO:0032268 GO:0032991 GO:0033043 GO:0033044 GO:0034728 GO:0040008 GO:0042742 GO:0042802 GO:0042826 GO:0043044 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043486 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0048580 GO:0048638 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051239 GO:0051246 GO:0051276 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0070013 GO:0070603 GO:0071824 GO:0071840 GO:0080090 GO:0090311 GO:0097346 GO:0098542 GO:1902275 GO:1902494 GO:1904949 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-HIT

Protein Analysis

173

Amino Acids

19.1

Weight (kDa)

8.81

Isoelectric Point (pI)

53.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-HIT	PF04438	131 - 159	5.4e-09	HIT zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37055
fragaria_vesca	FvH4_3g39740
malus_domestica	MD03G1056300.v1.1 MD11G1057500.v1.1
prunus_persica	Prupe.6G048500_v2.0.a1 Prupe.6G048500_v2.0.a1
pyrus_communis	pycom03g04460
rosa_chinensis	RchiOBHm_Chr5g0071621
rosa_laevigata	RLG00000036233
rosa_multiflora	Rmu_co7965106.1_g000001 Rmu_sc0005745.1_g000030
rosa_roxburghii	Rroxscaffold_1G00009560
rosa_rugosa	Rorug05G0413600
rosa_samantha	Rh5AG469600 Rh5BG489000 Rh5CG512900 Rh5DG499600
rosa_wichuraiana	Rw5G043630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	236, 283
AciI	CCGC	7 cut(s)	18, 28, 75, 97, 335, 391, 394
AclWI	GGATC	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	506
AcuI	CTGAAG	1 cut(s)	377
AfiI	CCNNNNNNNGG	2 cut(s)	30, 103
AflIII	ACRYGT	2 cut(s)	12, 434
AgsI	TTSAA	2 cut(s)	125, 326
AjiI	CACGTC	1 cut(s)	13
AjnI	CCWGG	2 cut(s)	102, 275
AluBI	AGCT	4 cut(s)	128, 266, 304, 381
AluI	AGCT	4 cut(s)	128, 266, 304, 381
Alw21I	GWGCWC	2 cut(s)	89, 383
AlwI	GGATC	1 cut(s)	210
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	4 cut(s)	71, 107, 226, 362
ApoI	RAATTY	1 cut(s)	506
AspLEI	GCGC	1 cut(s)	456
AspS9I	GGNCC	1 cut(s)	371
AsuC2I	CCSGG	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	371
BanI	GGYRCC	2 cut(s)	236, 283
BanII	GRGCYC	1 cut(s)	383
BarI	GAAGNNNNNNTAC	2 cut(s)	43, 75
Bbv12I	GWGCWC	2 cut(s)	89, 383
BbvI	GCAGC	4 cut(s)	58, 94, 238, 374
BciT130I	CCWGG	2 cut(s)	104, 277
BcnI	CCSGG	1 cut(s)	253
BfaI	CTAG	1 cut(s)	117
BglI	GCCNNNNNGGC	1 cut(s)	281
BisI	GCNGC	7 cut(s)	72, 75, 108, 227, 335, 363, 394
BlsI	GCNGC	7 cut(s)	73, 76, 109, 228, 336, 364, 395
Bme1390I	CCNGG	3 cut(s)	104, 253, 277
Bme18I	GGWCC	1 cut(s)	371
BmgBI	CACGTC	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	2 cut(s)	238, 285
BmrFI	CCNGG	3 cut(s)	104, 253, 277
BpuEI	CTTGAG	2 cut(s)	290, 320
BpuMI	CCSGG	1 cut(s)	253
BsaAI	YACGTR	1 cut(s)	435
BsaBI	GATNNNNATC	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	102, 287
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 103
Bse118I	RCCGGY	1 cut(s)	30
Bse8I	GATNNNNATC	1 cut(s)	201
BseBI	CCWGG	2 cut(s)	104, 277
BseDI	CCNNGG	2 cut(s)	102, 287
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	2 cut(s)	30, 103
BseXI	GCAGC	4 cut(s)	58, 94, 238, 374
BseYI	CCCAGC	1 cut(s)	146
BsgI	GTGCAG	1 cut(s)	388
Bsh1285I	CGRYCG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	275
BshNI	GGYRCC	2 cut(s)	236, 283
BsiEI	CGRYCG	1 cut(s)	35
BsiHKAI	GWGCWC	2 cut(s)	89, 383
BsiSI	CCGG	3 cut(s)	31, 43, 253
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	2 cut(s)	30, 103
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	275
Bsp1286I	GDGCHC	2 cut(s)	89, 383
Bsp143I	GATC	1 cut(s)	202
BspACI	CCGC	7 cut(s)	18, 28, 75, 97, 335, 391, 394
BspANI	GGCC	1 cut(s)	275
BspLI	GGNNCC	2 cut(s)	238, 285
BspPI	GGATC	1 cut(s)	210
BspT107I	GGYRCC	2 cut(s)	236, 283
BsrFI	RCCGGY	1 cut(s)	30
BssAI	RCCGGY	1 cut(s)	30
BssECI	CCNNGG	2 cut(s)	102, 287
BssMI	GATC	1 cut(s)	202
Bst2UI	CCWGG	2 cut(s)	104, 277
Bst4CI	ACNGT	2 cut(s)	160, 409
BstBAI	YACGTR	1 cut(s)	435
BstC8I	GCNNGC	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	456
BstKTI	GATC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	202
BstMCI	CGRYCG	1 cut(s)	35
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 272, 281, 402
BstNI	CCWGG	2 cut(s)	104, 277
BstSCI	CCNGG	3 cut(s)	102, 251, 275
BstV1I	GCAGC	4 cut(s)	58, 94, 238, 374
BsuRI	GGCC	1 cut(s)	275
BtrI	CACGTC	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	2 cut(s)	87, 405
Cac8I	GCNNGC	1 cut(s)	258
CfoI	GCGC	1 cut(s)	456
Cfr10I	RCCGGY	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	371
CviAII	CATG	1 cut(s)	341
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
EciI	GGCGGA	2 cut(s)	7, 17
Ecl136II	GAGCTC	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	371
Eco53kI	GAGCTC	1 cut(s)	381
Eco57I	CTGAAG	1 cut(s)	377
EcoICRI	GAGCTC	1 cut(s)	381
EcoO109I	RGGNCCY	1 cut(s)	371
EcoRII	CCWGG	2 cut(s)	102, 275
EcoT38I	GRGCYC	1 cut(s)	383
FaeI	CATG	1 cut(s)	344
FaiI	YATR	7 cut(s)	83, 213, 215, 342, 432, 452, 486
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	1 cut(s)	340
FauI	CCCGC	1 cut(s)	398
Fnu4HI	GCNGC	7 cut(s)	72, 75, 108, 227, 335, 363, 394
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	383
Fsp4HI	GCNGC	7 cut(s)	72, 75, 108, 227, 335, 363, 394
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	455
GluI	GCNGC	7 cut(s)	72, 75, 108, 227, 335, 363, 394
GsaI	CCCAGC	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	3 cut(s)	31, 43, 253
HhaI	GCGC	1 cut(s)	456
Hin1II	CATG	1 cut(s)	344
Hin6I	GCGC	1 cut(s)	454
HinP1I	GCGC	1 cut(s)	454
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	2 cut(s)	46, 326
HpaII	CCGG	3 cut(s)	31, 43, 253
Hpy188I	TCNGA	3 cut(s)	357, 378, 504
Hpy188III	TCNNGA	3 cut(s)	191, 269, 323
Hpy99I	CGWCG	2 cut(s)	40, 179
HpyAV	CCTTC	3 cut(s)	34, 274, 352
HpyCH4III	ACNGT	2 cut(s)	160, 409
HpyCH4IV	ACGT	2 cut(s)	12, 434
HpyCH4V	TGCA	1 cut(s)	405
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 272, 281, 402
HpySE526I	ACGT	2 cut(s)	12, 434
Hsp92II	CATG	1 cut(s)	344
HspAI	GCGC	1 cut(s)	454
Kzo9I	GATC	1 cut(s)	202
Lsp1109I	GCAGC	4 cut(s)	58, 94, 238, 374
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	2 cut(s)	12, 434
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	1 cut(s)	232
MhlI	GDGCHC	2 cut(s)	89, 383
MluCI	AATT	1 cut(s)	506
MmeI	TCCRAC	1 cut(s)	132
MspI	CCGG	3 cut(s)	31, 43, 253
MspR9I	CCNGG	3 cut(s)	104, 253, 277
MvaI	CCWGG	2 cut(s)	104, 277
MwoI	GCNNNNNNNGC	4 cut(s)	113, 272, 281, 402
NciI	CCSGG	1 cut(s)	253
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	1 cut(s)	344
NlaIV	GGNNCC	2 cut(s)	238, 285
PfeI	GAWTC	2 cut(s)	46, 326
PkrI	GCNGC	7 cut(s)	73, 76, 109, 228, 336, 364, 395
Ppu21I	YACGTR	1 cut(s)	435
PpuMI	RGGWCCY	1 cut(s)	371
Psp124BI	GAGCTC	1 cut(s)	383
Psp5II	RGGWCCY	1 cut(s)	371
Psp6I	CCWGG	2 cut(s)	102, 275
PspFI	CCCAGC	1 cut(s)	146
PspGI	CCWGG	2 cut(s)	102, 275
PspN4I	GGNNCC	2 cut(s)	238, 285
PspPI	GGNCC	1 cut(s)	371
PspPPI	RGGWCCY	1 cut(s)	371
SacI	GAGCTC	1 cut(s)	383
SatI	GCNGC	7 cut(s)	72, 75, 108, 227, 335, 363, 394
Sau3AI	GATC	1 cut(s)	202
Sau96I	GGNCC	1 cut(s)	371
ScrFI	CCNGG	3 cut(s)	104, 253, 277
SduI	GDGCHC	2 cut(s)	89, 383
SinI	GGWCC	1 cut(s)	371
SmlI	CTYRAG	2 cut(s)	269, 299
SmoI	CTYRAG	2 cut(s)	269, 299
Sse9I	AATT	1 cut(s)	506
SsiI	CCGC	7 cut(s)	18, 28, 75, 97, 335, 391, 394
SspMI	CTAG	1 cut(s)	117
SstI	GAGCTC	1 cut(s)	383
StyD4I	CCNGG	3 cut(s)	102, 251, 275
TaaI	ACNGT	2 cut(s)	160, 409
TaiI	ACGT	2 cut(s)	15, 437
TaqI	TCGA	1 cut(s)	38
TasI	AATT	1 cut(s)	506
TauI	GCSGC	3 cut(s)	77, 337, 396
TfiI	GAWTC	2 cut(s)	46, 326
TscAI	CASTG	2 cut(s)	94, 412
TseI	GCWGC	4 cut(s)	71, 107, 226, 362
TspRI	CASTG	2 cut(s)	94, 412
VpaK11BI	GGWCC	1 cut(s)	371
XapI	RAATTY	1 cut(s)	506
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.