Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7965106.1

Orthogroup ID

OG0013344

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 485

Gene Structure 485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7965106.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 208 bp

atggacgatgacctgtccgcccccttccgccgatcctcgagtcggaatcgtaaggtcgcgtcgaaaatggctgctgcccttatgagcactgataaccgcacccaggctgcccttgctaggcttgaagctttggaaaacgacaatgctgggttggaaactgtggaggttaatgacgacgatgaagcttctcttgatgatgaggatcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009909 GO:0009987 GO:0016043 GO:0019222 GO:0019899 GO:0031056 GO:0031063 GO:0031323 GO:0031399 GO:0031491 GO:0031974 GO:0031981 GO:0032268 GO:0032991 GO:0033043 GO:0033044 GO:0034728 GO:0040008 GO:0042742 GO:0042802 GO:0042826 GO:0043044 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043486 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0048580 GO:0048638 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051239 GO:0051246 GO:0051276 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0070013 GO:0070603 GO:0071824 GO:0071840 GO:0080090 GO:0090311 GO:0097346 GO:0098542 GO:1902275 GO:1902494 GO:1904949 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-HIT

Protein Analysis

69

Amino Acids

7.56

Weight (kDa)

4.16

Isoelectric Point (pI)

53.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37055
fragaria_vesca	FvH4_3g39740
malus_domestica	MD03G1056300.v1.1 MD11G1057500.v1.1
prunus_persica	Prupe.6G048500_v2.0.a1 Prupe.6G048500_v2.0.a1
pyrus_communis	pycom03g04460
rosa_chinensis	RchiOBHm_Chr5g0071621
rosa_laevigata	RLG00000036233
rosa_multiflora	Rmu_co7965106.1_g000001 Rmu_sc0005745.1_g000030
rosa_roxburghii	Rroxscaffold_1G00009560
rosa_rugosa	Rorug05G0413600
rosa_samantha	Rh5AG469600 Rh5BG489000 Rh5CG512900 Rh5DG499600
rosa_wichuraiana	Rw5G043630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	59
AciI	CCGC	3 cut(s)	18, 28, 97
AclWI	GGATC	1 cut(s)	27
AfiI	CCNNNNNNNGG	3 cut(s)	42, 103, 117
AgsI	TTSAA	1 cut(s)	125
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	2 cut(s)	128, 185
AluI	AGCT	2 cut(s)	128, 185
Alw21I	GWGCWC	1 cut(s)	89
AlwI	GGATC	1 cut(s)	27
Ama87I	CYCGRG	1 cut(s)	37
ApeKI	GCWGC	3 cut(s)	71, 74, 107
AvaI	CYCGRG	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	89
BbvI	GCAGC	3 cut(s)	58, 61, 94
BciT130I	CCWGG	1 cut(s)	104
BfaI	CTAG	1 cut(s)	117
BisI	GCNGC	3 cut(s)	72, 75, 108
BlsI	GCNGC	3 cut(s)	73, 76, 109
Bme1390I	CCNGG	1 cut(s)	104
BmeT110I	CYCGRG	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 103, 117
Bse8I	GATNNNNATC	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	102
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	3 cut(s)	42, 103, 117
BseXI	GCAGC	3 cut(s)	58, 61, 94
BseYI	CCCAGC	1 cut(s)	146
Bsh1236I	CGCG	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	89
BsiHKCI	CYCGRG	1 cut(s)	37
BslI	CCNNNNNNNGG	3 cut(s)	42, 103, 117
BsoBI	CYCGRG	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	32, 202
BspACI	CCGC	3 cut(s)	18, 28, 97
BspFNI	CGCG	1 cut(s)	59
BspPI	GGATC	1 cut(s)	27
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	2 cut(s)	32, 202
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	160
BstFNI	CGCG	1 cut(s)	59
BstKTI	GATC	2 cut(s)	35, 205
BstMBI	GATC	2 cut(s)	32, 202
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	102
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	3 cut(s)	58, 61, 94
BtsIMutI	CAGTG	1 cut(s)	87
CseI	GACGC	1 cut(s)	48
CviJI	RGCY	5 cut(s)	71, 107, 121, 128, 185
CviKI_1	RGCY	5 cut(s)	71, 107, 121, 128, 185
DpnI	GATC	2 cut(s)	34, 204
DpnII	GATC	2 cut(s)	32, 202
EciI	GGCGGA	2 cut(s)	7, 17
Eco88I	CYCGRG	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	102
FaiI	YATR	1 cut(s)	83
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
Fnu4HI	GCNGC	3 cut(s)	72, 75, 108
Fsp4HI	GCNGC	3 cut(s)	72, 75, 108
FspBI	CTAG	1 cut(s)	117
GluI	GCNGC	3 cut(s)	72, 75, 108
GsaI	CCCAGC	1 cut(s)	150
HgaI	GACGC	1 cut(s)	48
HindIII	AAGCTT	2 cut(s)	126, 183
HinfI	GANTC	2 cut(s)	40, 46
Hpy188I	TCNGA	1 cut(s)	45
Hpy188III	TCNNGA	1 cut(s)	191
Hpy99I	CGWCG	2 cut(s)	64, 179
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
Kzo9I	GATC	2 cut(s)	32, 202
LpnPI	CCDG	4 cut(s)	26, 89, 116, 132
Lsp1109I	GCAGC	3 cut(s)	58, 61, 94
MaeI	CTAG	1 cut(s)	117
MalI	GATC	2 cut(s)	34, 204
MboI	GATC	2 cut(s)	32, 202
MhlI	GDGCHC	1 cut(s)	89
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	2 cut(s)	23, 132
MnlI	CCTC	3 cut(s)	46, 157, 193
MseI	TTAA	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeII	GATC	2 cut(s)	32, 202
PaeR7I	CTCGAG	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	46
PkrI	GCNGC	3 cut(s)	73, 76, 109
PleI	GAGTC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	102
PspFI	CCCAGC	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	102
PspXI	VCTCGAGB	1 cut(s)	37
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	3 cut(s)	72, 75, 108
Sau3AI	GATC	2 cut(s)	32, 202
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	89
SetI	ASST	5 cut(s)	15, 57, 130, 168, 187
Sfr274I	CTCGAG	1 cut(s)	37
SlaI	CTCGAG	1 cut(s)	37
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
SsiI	CCGC	3 cut(s)	18, 28, 97
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	2 cut(s)	38, 62
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	3 cut(s)	71, 74, 107
TspDTI	ATGAA	1 cut(s)	195
TspRI	CASTG	1 cut(s)	94
XhoI	CTCGAG	1 cut(s)	37
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.