Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0013344

Physical Location & Seq

Genomic Coordinates Reverse (-)

3471217 .. 3472971

Gene Structure 1755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G048500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGACGATGACGTTTCCAACCCAATGCGCCGAATGTCGAGTCGAACTCGCAAGGTTGCTTCGAAAATGACTGCTGCTCTTCAGAGTAGTGACAACCGCACGCAGGCTGCCCTTGCTCGGCTTGAAGCTTTAGAAAATGATAATGCGGGTTTGGAGATGGTAGAGGCTAATGACGACGATGAAGCTTCTCTTGATGATGATGACCAAGTGTATATACAAAAGAAGCACTCTAAGGGCACCAAGCGCAAAACTCGGCAGGCAAAAGCTCTTGAGGCCAGGAAGGCCCCAAGAACATTCCTTGAGCTTGTACATGAGGCAAATCTCGACTCCTTGCCTCCTCATGTTCCTTCCTATCTGAAGGCAGCAGTGGGACCTCCAAGCTCTACCTCCCGCCGCCACTTCTGCACTGTGTGTGGTTCTGCTGCCAACTATACATGTGTGAGGTGTGGGGTGCGCTTTTGTTCGTCTCGTTGCCAGAATATACATAATGATACTCGTTGTCTGAAATTTGTTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009909 GO:0009987 GO:0016043 GO:0019222 GO:0019899 GO:0031056 GO:0031063 GO:0031323 GO:0031399 GO:0031491 GO:0031974 GO:0031981 GO:0032268 GO:0032991 GO:0033043 GO:0033044 GO:0034728 GO:0040008 GO:0042742 GO:0042802 GO:0042826 GO:0043044 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043486 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0048580 GO:0048638 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051239 GO:0051246 GO:0051276 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0070013 GO:0070603 GO:0071824 GO:0071840 GO:0080090 GO:0090311 GO:0097346 GO:0098542 GO:1902275 GO:1902494 GO:1904949 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-HIT

Protein Analysis

173

Amino Acids

19.09

Weight (kDa)

8.88

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37055
fragaria_vesca	FvH4_3g39740
malus_domestica	MD03G1056300.v1.1 MD11G1057500.v1.1
prunus_persica	Prupe.6G048500_v2.0.a1 Prupe.6G048500_v2.0.a1
pyrus_communis	pycom03g04460
rosa_chinensis	RchiOBHm_Chr5g0071621
rosa_laevigata	RLG00000036233
rosa_multiflora	Rmu_co7965106.1_g000001 Rmu_sc0005745.1_g000030
rosa_roxburghii	Rroxscaffold_1G00009560
rosa_rugosa	Rorug05G0413600
rosa_samantha	Rh5AG469600 Rh5BG489000 Rh5CG512900 Rh5DG499600
rosa_wichuraiana	Rw5G043630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	236
AciI	CCGC	4 cut(s)	97, 146, 391, 394
AcsI	RAATTY	1 cut(s)	506
AcuI	CTGAAG	2 cut(s)	65, 377
AdeI	CACNNNGTG	1 cut(s)	411
AfaI	GTAC	1 cut(s)	309
AfiI	CCNNNNNNNGG	2 cut(s)	103, 117
AflIII	ACRYGT	1 cut(s)	434
AgsI	TTSAA	1 cut(s)	125
AjnI	CCWGG	1 cut(s)	275
AluBI	AGCT	5 cut(s)	128, 185, 266, 304, 381
AluI	AGCT	5 cut(s)	128, 185, 266, 304, 381
Alw26I	GTCTC	1 cut(s)	471
AoxI	GGCC	2 cut(s)	273, 282
ApeKI	GCWGC	4 cut(s)	74, 107, 362, 422
ApoI	RAATTY	1 cut(s)	506
ArsI	GACNNNNNNTTYG	2 cut(s)	25, 57
AspLEI	GCGC	3 cut(s)	30, 246, 456
AspS9I	GGNCC	2 cut(s)	283, 371
AsuII	TTCGAA	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	239
BanI	GGYRCC	1 cut(s)	236
BbvI	GCAGC	4 cut(s)	61, 94, 374, 409
BccI	CCATC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	471
BglI	GCCNNNNNGGC	1 cut(s)	281
BisI	GCNGC	5 cut(s)	75, 108, 363, 394, 423
BlsI	GCNGC	5 cut(s)	76, 109, 364, 395, 424
Bme1390I	CCNGG	1 cut(s)	277
Bme18I	GGWCC	1 cut(s)	371
BmgT120I	GGNCC	2 cut(s)	283, 371
BmiI	GGNNCC	3 cut(s)	238, 285, 372
BmrFI	CCNGG	1 cut(s)	277
BplI	GAGNNNNNCTC	2 cut(s)	31, 63
Bpu14I	TTCGAA	1 cut(s)	62
BpuEI	CTTGAG	2 cut(s)	290, 320
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 117
BseBI	CCWGG	1 cut(s)	277
BseLI	CCNNNNNNNGG	2 cut(s)	103, 117
BseRI	GAGGAG	1 cut(s)	327
BseSI	GKGCMC	1 cut(s)	239
BseXI	GCAGC	4 cut(s)	61, 94, 374, 409
BsgI	GTGCAG	1 cut(s)	388
BshFI	GGCC	2 cut(s)	275, 284
BshNI	GGYRCC	1 cut(s)	236
BslFI	GGGAC	1 cut(s)	384
BslI	CCNNNNNNNGG	2 cut(s)	103, 117
BsmAI	GTCTC	1 cut(s)	471
BsmBI	CGTCTC	1 cut(s)	471
BsmFI	GGGAC	1 cut(s)	384
BsnI	GGCC	2 cut(s)	275, 284
Bsp119I	TTCGAA	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	239
Bsp1407I	TGTACA	1 cut(s)	307
BspACI	CCGC	4 cut(s)	97, 146, 391, 394
BspANI	GGCC	2 cut(s)	275, 284
BspLI	GGNNCC	3 cut(s)	238, 285, 372
BspQI	GCTCTTC	1 cut(s)	84
BspT104I	TTCGAA	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	236
BsrGI	TGTACA	1 cut(s)	307
Bst2UI	CCWGG	1 cut(s)	277
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	1 cut(s)	84
BstAUI	TGTACA	1 cut(s)	307
BstBI	TTCGAA	1 cut(s)	62
BstC8I	GCNNGC	3 cut(s)	101, 105, 258
BstDEI	CTNAG	1 cut(s)	231
BstHHI	GCGC	3 cut(s)	30, 246, 456
BstMAI	GTCTC	1 cut(s)	471
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 243, 272, 281, 402
BstNI	CCWGG	1 cut(s)	277
BstNSI	RCATGY	1 cut(s)	438
BstSCI	CCNGG	1 cut(s)	275
BstSLI	GKGCMC	1 cut(s)	239
BstV1I	GCAGC	4 cut(s)	61, 94, 374, 409
BsuRI	GGCC	2 cut(s)	275, 284
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	372, 405
Cac8I	GCNNGC	3 cut(s)	101, 105, 258
CfoI	GCGC	3 cut(s)	30, 246, 456
Cfr13I	GGNCC	2 cut(s)	283, 371
Csp6I	GTAC	1 cut(s)	308
CviAII	CATG	3 cut(s)	311, 341, 435
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	1 cut(s)	231
DraIII	CACNNNGTG	1 cut(s)	411
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	371
Eco57I	CTGAAG	2 cut(s)	65, 377
EcoO109I	RGGNCCY	2 cut(s)	283, 371
EcoRII	CCWGG	1 cut(s)	275
Esp3I	CGTCTC	1 cut(s)	471
FaeI	CATG	3 cut(s)	314, 344, 438
FaiI	YATR	8 cut(s)	213, 215, 312, 342, 432, 436, 482, 486
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	1 cut(s)	384
FatI	CATG	3 cut(s)	310, 340, 434
FauI	CCCGC	2 cut(s)	139, 398
Fnu4HI	GCNGC	5 cut(s)	75, 108, 363, 394, 423
Fsp4HI	GCNGC	5 cut(s)	75, 108, 363, 394, 423
GlaI	GCGC	3 cut(s)	29, 245, 455
GluI	GCNGC	5 cut(s)	75, 108, 363, 394, 423
HaeIII	GGCC	2 cut(s)	275, 284
HhaI	GCGC	3 cut(s)	30, 246, 456
Hin1II	CATG	3 cut(s)	314, 344, 438
Hin6I	GCGC	3 cut(s)	28, 244, 454
HinP1I	GCGC	3 cut(s)	28, 244, 454
HindIII	AAGCTT	2 cut(s)	126, 183
HinfI	GANTC	2 cut(s)	40, 326
Hpy188I	TCNGA	3 cut(s)	84, 357, 504
Hpy188III	TCNNGA	3 cut(s)	191, 269, 323
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	3 cut(s)	274, 352, 357
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	1 cut(s)	405
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 243, 272, 281, 402
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	3 cut(s)	314, 344, 438
HspAI	GCGC	3 cut(s)	28, 244, 454
LguI	GCTCTTC	1 cut(s)	84
LpnPI	CCDG	5 cut(s)	89, 242, 262, 289, 488
Lsp1109I	GCAGC	4 cut(s)	61, 94, 374, 409
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	89
MboII	GAAGA	1 cut(s)	71
MhlI	GDGCHC	1 cut(s)	239
MluCI	AATT	1 cut(s)	506
MlyI	GAGTC	2 cut(s)	49, 320
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	8 cut(s)	157, 265, 307, 345, 348, 384, 397, 435
MspR9I	CCNGG	1 cut(s)	277
MvaI	CCWGG	1 cut(s)	277
MwoI	GCNNNNNNNGC	5 cut(s)	113, 243, 272, 281, 402
NlaIII	CATG	3 cut(s)	314, 344, 438
NlaIV	GGNNCC	3 cut(s)	238, 285, 372
NmeAIII	GCCGAG	2 cut(s)	97, 232
NmuCI	GTSAC	1 cut(s)	89
NspI	RCATGY	1 cut(s)	438
NspV	TTCGAA	1 cut(s)	62
PciI	ACATGT	1 cut(s)	434
PciSI	GCTCTTC	1 cut(s)	84
PkrI	GCNGC	5 cut(s)	76, 109, 364, 395, 424
PleI	GAGTC	2 cut(s)	48, 320
PpsI	GAGTC	2 cut(s)	48, 320
PpuMI	RGGWCCY	1 cut(s)	371
PscI	ACATGT	1 cut(s)	434
Psp5II	RGGWCCY	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	275
PspN4I	GGNNCC	3 cut(s)	238, 285, 372
PspPI	GGNCC	2 cut(s)	283, 371
PspPPI	RGGWCCY	1 cut(s)	371
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SapI	GCTCTTC	1 cut(s)	84
SatI	GCNGC	5 cut(s)	75, 108, 363, 394, 423
Sau96I	GGNCC	2 cut(s)	283, 371
SchI	GAGTC	2 cut(s)	49, 320
ScrFI	CCNGG	1 cut(s)	277
SduI	GDGCHC	1 cut(s)	239
SfiI	GGCCNNNNNGGCC	1 cut(s)	281
SfuI	TTCGAA	1 cut(s)	62
SinI	GGWCC	1 cut(s)	371
SmlI	CTYRAG	2 cut(s)	269, 299
SmoI	CTYRAG	2 cut(s)	269, 299
Sse9I	AATT	1 cut(s)	506
SsiI	CCGC	4 cut(s)	97, 146, 391, 394
StyD4I	CCNGG	1 cut(s)	275
TaaI	ACNGT	1 cut(s)	409
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	4 cut(s)	38, 43, 62, 324
TasI	AATT	1 cut(s)	506
TatI	WGTACW	1 cut(s)	307
TauI	GCSGC	1 cut(s)	396
TscAI	CASTG	2 cut(s)	372, 412
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	4 cut(s)	74, 107, 362, 422
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	195
TspRI	CASTG	2 cut(s)	372, 412
VpaK11BI	GGWCC	1 cut(s)	371
XapI	RAATTY	1 cut(s)	506
XceI	RCATGY	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.