Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011227

Physical Location & Seq

Genomic Coordinates Forward (+)

15724477 .. 15727206

Gene Structure 2730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G39250.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTTTAGTGAAGAAGTATTGAAGAATGTGTTTCCATTGCTAGAAGGCGAAGATCTCGCGTCATGTATGGGTGTTTGCAAACAATGGAGAGATATCGCAAGAGACGATTTCTACTGGAAATGTCAATGTGCAAAGAAATGGCCATCGGTTTGCAAACGGCACAAACCTCCTACTGAAACATACTACAAAATGTATCAAACGTTTAGTAAGCGGCGGTTAAACCGCGCGCTTCCTCCTCCGCGATTGTCGTTCGAAAACTTGGAGTTTTTCATCGATATTTGGTCGGAAGAGAGGCTCGTGTTCTCGGGGTTAATACCCGGTGTTGCGTTGGAAAATGGTATCGAAACGTTACCGTTAGGGATCAGTAATGTTCTTAGAACTCATCTTGGTAGACCTGATTACAAGATGGTTGTTCCTGCTGAGCCTAGGTTCACTATTCCGTTAAACCAGTCTGTTAGTGTCTCTGTTCTTGTGGCGAGGAATGATTCTGATAAGGTCGCTCGGATAATCAACCGGTCTGTGTTCGATTATATAGACCGGTCATCGTATAGAGCGCTTGCGTTTGAGTATCTTGACTTGTCTCCTTGTTATCCTTTTATCTCCGGTATACGAGCTTGGATCTCTTTGCTGTTTATGGATGTTGAGGATATGAATGATGATGGGTTACTCGATGTTTTCGGGATTCAGTTGGATTTCAATGATGTTGCTGACACTAAAGAAGAGGTTTTGTGGCTTCTAGATATGCTTGATTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

252

Amino Acids

29.3

Weight (kDa)

5.04

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	4 - 43	1.3e-09	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39250 AT5G39250
fragaria_vesca	FvH4_6g47020 FvH4_6g47020
malus_domestica	MD09G1064500.v1.1
prunus_persica	Prupe.3G256500_v2.0.a1 Prupe.3G256500_v2.0.a1 Prupe.3G256500_v2.0.a1 Prupe.3G256500_v2.0.a1 Prupe.3G256500_v2.0.a1
pyrus_communis	pycom111g05420
rosa_chinensis	RchiOBHm_Chr2g0166081
rosa_laevigata	RLG00000021583
rosa_multiflora	Rmu_sc0006218.1_g000024
rosa_roxburghii	Rroxscaffold_2G00085220
rosa_samantha	Rh2AG586000 Rh2BG597800 Rh2CG568500 Rh2DG607900
rosa_wichuraiana	Rw2G048860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	391, 607
AccII	CGCG	4 cut(s)	59, 225, 227, 241
AciI	CCGC	4 cut(s)	211, 214, 223, 239
AclI	AACGTT	2 cut(s)	200, 347
AclWI	GGATC	2 cut(s)	368, 626
AcoI	YGGCCR	1 cut(s)	140
AfeI	AGCGCT	1 cut(s)	555
AgeI	ACCGGT	2 cut(s)	513, 537
AgsI	TTSAA	2 cut(s)	22, 697
AluBI	AGCT	1 cut(s)	614
AluI	AGCT	1 cut(s)	614
Alw26I	GTCTC	3 cut(s)	96, 466, 585
AlwI	GGATC	2 cut(s)	368, 626
Ama87I	CYCGRG	1 cut(s)	304
Aor51HI	AGCGCT	1 cut(s)	555
AoxI	GGCC	1 cut(s)	140
AsiGI	ACCGGT	2 cut(s)	513, 537
AspA2I	CCTAGG	1 cut(s)	425
AspLEI	GCGC	3 cut(s)	227, 229, 556
AsuC2I	CCSGG	1 cut(s)	318
AsuII	TTCGAA	1 cut(s)	252
AvaI	CYCGRG	1 cut(s)	304
AvrII	CCTAGG	1 cut(s)	425
BalI	TGGCCA	1 cut(s)	142
BauI	CACGAG	1 cut(s)	296
BccI	CCATC	3 cut(s)	151, 400, 653
BceAI	ACGGC	1 cut(s)	173
BcnI	CCSGG	1 cut(s)	318
BcoDI	GTCTC	3 cut(s)	96, 466, 585
BfaI	CTAG	3 cut(s)	41, 426, 737
BfoI	RGCGCY	1 cut(s)	557
BglII	AGATCT	1 cut(s)	52
BisI	GCNGC	1 cut(s)	212
BlnI	CCTAGG	1 cut(s)	425
BlpI	GCTNAGC	1 cut(s)	420
BlsI	GCNGC	1 cut(s)	213
Bme1390I	CCNGG	1 cut(s)	318
BmeT110I	CYCGRG	1 cut(s)	304
BmrFI	CCNGG	1 cut(s)	318
Bpu1102I	GCTNAGC	1 cut(s)	420
Bpu14I	TTCGAA	1 cut(s)	252
BpuMI	CCSGG	1 cut(s)	318
Bsa29I	ATCGAT	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	425
BsaWI	WCCGGW	3 cut(s)	513, 537, 602
Bse118I	RCCGGY	2 cut(s)	513, 537
Bse1I	ACTGG	2 cut(s)	119, 448
Bse3DI	GCAATG	1 cut(s)	35
BseCI	ATCGAT	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	425
BseGI	GGATG	1 cut(s)	643
BseMI	GCAATG	1 cut(s)	35
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	2 cut(s)	119, 448
BsePI	GCGCGC	1 cut(s)	225
BseRI	GAGGAG	1 cut(s)	225
Bsh1236I	CGCG	4 cut(s)	59, 225, 227, 241
BshFI	GGCC	1 cut(s)	142
BshTI	ACCGGT	2 cut(s)	513, 537
BshVI	ATCGAT	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	304
BsiSI	CCGG	4 cut(s)	318, 514, 538, 603
BsmAI	GTCTC	3 cut(s)	96, 466, 585
BsmBI	CGTCTC	1 cut(s)	96
BsnI	GGCC	1 cut(s)	142
BsoBI	CYCGRG	1 cut(s)	304
Bsp119I	TTCGAA	1 cut(s)	252
Bsp143I	GATC	3 cut(s)	52, 360, 618
Bsp1720I	GCTNAGC	1 cut(s)	420
BspACI	CCGC	4 cut(s)	211, 214, 223, 239
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	1 cut(s)	412
BspDI	ATCGAT	1 cut(s)	273
BspFNI	CGCG	4 cut(s)	59, 225, 227, 241
BspPI	GGATC	2 cut(s)	368, 626
BspT104I	TTCGAA	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	35
BsrFI	RCCGGY	2 cut(s)	513, 537
BsrI	ACTGG	2 cut(s)	119, 448
BssAI	RCCGGY	2 cut(s)	513, 537
BssECI	CCNNGG	1 cut(s)	425
BssHII	GCGCGC	1 cut(s)	225
BssMI	GATC	3 cut(s)	52, 360, 618
BssNAI	GTATAC	1 cut(s)	608
BssSI	CACGAG	1 cut(s)	296
BssT1I	CCWWGG	1 cut(s)	425
Bst1107I	GTATAC	1 cut(s)	608
Bst2BI	CACGAG	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	354
Bst6I	CTCTTC	2 cut(s)	282, 714
BstBI	TTCGAA	1 cut(s)	252
BstC8I	GCNNGC	2 cut(s)	227, 558
BstDEI	CTNAG	2 cut(s)	374, 420
BstF5I	GGATG	1 cut(s)	643
BstFNI	CGCG	4 cut(s)	59, 225, 227, 241
BstH2I	RGCGCY	1 cut(s)	557
BstHHI	GCGC	3 cut(s)	227, 229, 556
BstKTI	GATC	3 cut(s)	55, 363, 621
BstMAI	GTCTC	3 cut(s)	96, 466, 585
BstMBI	GATC	3 cut(s)	52, 360, 618
BstSCI	CCNGG	1 cut(s)	316
BstUI	CGCG	4 cut(s)	59, 225, 227, 241
BstX2I	RGATCY	2 cut(s)	52, 618
BstYI	RGATCY	2 cut(s)	52, 618
BstZ17I	GTATAC	1 cut(s)	608
Bsu15I	ATCGAT	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	142
BsuTUI	ATCGAT	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	643
Cac8I	GCNNGC	2 cut(s)	227, 558
CfoI	GCGC	3 cut(s)	227, 229, 556
Cfr10I	RCCGGY	2 cut(s)	513, 537
ClaI	ATCGAT	1 cut(s)	273
CseI	GACGC	1 cut(s)	48
CspAI	ACCGGT	2 cut(s)	513, 537
CviAII	CATG	1 cut(s)	63
CviJI	RGCY	5 cut(s)	142, 295, 424, 614, 733
CviKI_1	RGCY	5 cut(s)	142, 295, 424, 614, 733
DdeI	CTNAG	2 cut(s)	374, 420
DpnI	GATC	3 cut(s)	54, 362, 620
DpnII	GATC	3 cut(s)	52, 360, 618
EaeI	YGGCCR	1 cut(s)	140
Eam1104I	CTCTTC	2 cut(s)	282, 714
EarI	CTCTTC	2 cut(s)	282, 714
Eco130I	CCWWGG	1 cut(s)	425
Eco32I	GATATC	1 cut(s)	94
Eco47III	AGCGCT	1 cut(s)	555
Eco88I	CYCGRG	1 cut(s)	304
EcoRV	GATATC	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	425
ErhI	CCWWGG	1 cut(s)	425
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	1 cut(s)	66
FatI	CATG	1 cut(s)	62
FblI	GTMKAC	2 cut(s)	391, 607
Fnu4HI	GCNGC	1 cut(s)	212
FokI	GGATG	1 cut(s)	650
Fsp4HI	GCNGC	1 cut(s)	212
FspBI	CTAG	3 cut(s)	41, 426, 737
GlaI	GCGC	3 cut(s)	226, 228, 555
GluI	GCNGC	1 cut(s)	212
HaeII	RGCGCY	1 cut(s)	557
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	4 cut(s)	318, 514, 538, 603
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	3 cut(s)	227, 229, 556
Hin1II	CATG	1 cut(s)	66
Hin6I	GCGC	3 cut(s)	225, 227, 554
HinP1I	GCGC	3 cut(s)	225, 227, 554
HinfI	GANTC	2 cut(s)	485, 682
HpaII	CCGG	4 cut(s)	318, 514, 538, 603
Hpy166II	GTNNAC	3 cut(s)	392, 432, 608
Hpy188I	TCNGA	3 cut(s)	286, 490, 504
Hpy188III	TCNNGA	3 cut(s)	572, 679, 737
Hpy8I	GTNNAC	3 cut(s)	392, 432, 608
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	1 cut(s)	354
HpyCH4IV	ACGT	2 cut(s)	200, 347
HpyCH4V	TGCA	3 cut(s)	78, 131, 153
HpyF3I	CTNAG	2 cut(s)	374, 420
HpySE526I	ACGT	2 cut(s)	200, 347
Hsp92II	CATG	1 cut(s)	66
HspAI	GCGC	3 cut(s)	225, 227, 554
Kzo9I	GATC	3 cut(s)	52, 360, 618
LpnPI	CCDG	8 cut(s)	100, 331, 408, 429, 461, 527, 551, 616
MaeI	CTAG	3 cut(s)	41, 426, 737
MaeII	ACGT	2 cut(s)	200, 347
MaeIII	GTNAC	2 cut(s)	348, 663
MalI	GATC	3 cut(s)	54, 362, 620
MboI	GATC	3 cut(s)	52, 360, 618
MboII	GAAGA	5 cut(s)	23, 34, 62, 299, 731
MflI	RGATCY	2 cut(s)	52, 618
MlsI	TGGCCA	1 cut(s)	142
MluNI	TGGCCA	1 cut(s)	142
MmeI	TCCRAC	3 cut(s)	264, 309, 669
MnlI	CCTC	7 cut(s)	177, 243, 246, 285, 471, 637, 715
Mox20I	TGGCCA	1 cut(s)	142
MscI	TGGCCA	1 cut(s)	142
MseI	TTAA	3 cut(s)	218, 311, 443
Msp20I	TGGCCA	1 cut(s)	142
MspI	CCGG	4 cut(s)	318, 514, 538, 603
MspR9I	CCNGG	1 cut(s)	318
MvnI	CGCG	4 cut(s)	59, 225, 227, 241
NciI	CCSGG	1 cut(s)	318
NdeII	GATC	3 cut(s)	52, 360, 618
NlaIII	CATG	1 cut(s)	66
NspV	TTCGAA	1 cut(s)	252
PauI	GCGCGC	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	485, 682
PinAI	ACCGGT	2 cut(s)	513, 537
PkrI	GCNGC	1 cut(s)	213
Psp1406I	AACGTT	2 cut(s)	200, 347
PsuI	RGATCY	2 cut(s)	52, 618
PteI	GCGCGC	1 cut(s)	225
SaqAI	TTAA	3 cut(s)	218, 311, 443
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	3 cut(s)	52, 360, 618
ScrFI	CCNGG	1 cut(s)	318
SetI	ASST	8 cut(s)	169, 203, 350, 397, 431, 498, 616, 726
SfuI	TTCGAA	1 cut(s)	252
SsiI	CCGC	4 cut(s)	211, 214, 223, 239
SspMI	CTAG	3 cut(s)	41, 426, 737
StyD4I	CCNGG	1 cut(s)	316
StyI	CCWWGG	1 cut(s)	425
TaaI	ACNGT	1 cut(s)	354
TaiI	ACGT	2 cut(s)	203, 350
TaqI	TCGA	5 cut(s)	252, 273, 342, 525, 669
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	2 cut(s)	485, 682
Tru1I	TTAA	3 cut(s)	218, 311, 443
Tru9I	TTAA	3 cut(s)	218, 311, 443
TspDTI	ATGAA	2 cut(s)	259, 665
TspGWI	ACGGA	1 cut(s)	429
XbaI	TCTAGA	1 cut(s)	736
XmaJI	CCTAGG	1 cut(s)	425
XmiI	GTMKAC	2 cut(s)	391, 607
XspI	CTAG	3 cut(s)	41, 426, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.