Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0011227

Physical Location & Seq

Genomic Coordinates Forward (+)

74903030 .. 74907732

Gene Structure 4703 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG568500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGACATGTGATGAGGTTCTGAAGGCTGTTTTTCCTTATCTGGAGGGTGTGGATCTTGCATCATGTATGGGAGTGTGTATGCAGTGGAGAAACATTGCCCGAGATGATTTCTTTTGGAAATGCTTGTGTGCTAAGAGATGGCCTTCTATCTGCAAGCAACCTAACCCCCCAACTGTAACTTACTACAAGCTCTATCAAACCTTTAATAAGCGCAAGCAACATCGAACTCTTCTTCCCCCTAGACTGTCCTTTGATGACTTGGAGTTTTTCATTGATATCTGCACTGAAGATGGATTTATCTTTTCAGAAGTGGTTCCAGGACCTATCCTACAGAACGGTATTAAAATCCCACCACCAGGAGCATGTGACATGCTCAAGTTTCACCTGGAGGGTCCAGAGTACAGGATGAAACTCCCTGTTGACCCAAAATTTACTGTTCCTCTGAGCCAGACAGTGAGTGTTTCAGTCCTTGTGGGGCGCAAGGATTCTAATAGGGTTGCTTGTATCATCAATAAATCTATGTTTGATTACATTGATCGGACAGCATACCGAGCGATGGCAAATGACTACCTTGACTTCTCTCCTGTCTACCCCTTTGTTTCGGGTATCCGGGCATGGATCTCGTTGCTTTTCATGGAAGAAGGAAATGAAGGTGCTATTGATGTTTTTGGGATTGAAATGGATTTCTGTGATGCAGCCAACTCCAAGGAAGAGGTTTTGTGGCTTTTAGATATGCTTGATTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

249

Amino Acids

28.67

Weight (kDa)

5.08

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	4 - 44	1.7e-09	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39250 AT5G39250
fragaria_vesca	FvH4_6g47020 FvH4_6g47020
malus_domestica	MD09G1064500.v1.1
prunus_persica	Prupe.3G256500_v2.0.a1 Prupe.3G256500_v2.0.a1 Prupe.3G256500_v2.0.a1 Prupe.3G256500_v2.0.a1 Prupe.3G256500_v2.0.a1
pyrus_communis	pycom111g05420
rosa_chinensis	RchiOBHm_Chr2g0166081
rosa_laevigata	RLG00000021583
rosa_multiflora	Rmu_sc0006218.1_g000024
rosa_roxburghii	Rroxscaffold_2G00085220
rosa_samantha	Rh2AG586000 Rh2BG597800 Rh2CG568500 Rh2DG607900
rosa_wichuraiana	Rw2G048860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	588
AclWI	GGATC	2 cut(s)	60, 626
AcsI	RAATTY	1 cut(s)	428
AcuI	CTGAAG	2 cut(s)	41, 306
AfaI	GTAC	1 cut(s)	401
AfiI	CCNNNNNNNGG	2 cut(s)	356, 556
AflIII	ACRYGT	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	677
AjnI	CCWGG	3 cut(s)	316, 355, 384
AloI	GAACNNNNNNTCC	2 cut(s)	217, 249
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
AlwI	GGATC	2 cut(s)	60, 626
Ama87I	CYCGRG	1 cut(s)	99
AoxI	GGCC	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	695
ApoI	RAATTY	1 cut(s)	428
Asp700I	GAANNNNTTC	1 cut(s)	312
AspLEI	GCGC	2 cut(s)	213, 480
AspS9I	GGNCC	2 cut(s)	320, 392
AsuC2I	CCSGG	1 cut(s)	611
AsuHPI	GGTGA	1 cut(s)	374
AvaI	CYCGRG	1 cut(s)	99
AvaII	GGWCC	2 cut(s)	320, 392
BbvI	GCAGC	1 cut(s)	707
BccI	CCATC	3 cut(s)	132, 284, 550
BcgI	CGANNNNNNTGC	2 cut(s)	603, 637
BciT130I	CCWGG	3 cut(s)	318, 357, 386
BciVI	GTATCC	1 cut(s)	617
BcnI	CCSGG	1 cut(s)	611
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	329
BfuI	GTATCC	1 cut(s)	617
BisI	GCNGC	1 cut(s)	696
BlsI	GCNGC	1 cut(s)	697
Bme1390I	CCNGG	4 cut(s)	318, 357, 386, 611
Bme18I	GGWCC	2 cut(s)	320, 392
BmeT110I	CYCGRG	1 cut(s)	99
BmgT120I	GGNCC	2 cut(s)	320, 392
BmiI	GGNNCC	2 cut(s)	315, 393
BmrFI	CCNGG	4 cut(s)	318, 357, 386, 611
BmsI	GCATC	2 cut(s)	68, 682
BpmI	CTGGAG	2 cut(s)	62, 407
BpuEI	CTTGAG	1 cut(s)	359
BpuMI	CCSGG	1 cut(s)	611
BsaJI	CCNNGG	1 cut(s)	705
Bsc4I	CCNNNNNNNGG	2 cut(s)	356, 556
Bse3DI	GCAATG	1 cut(s)	93
BseBI	CCWGG	3 cut(s)	318, 357, 386
BseDI	CCNNGG	1 cut(s)	705
BseGI	GGATG	1 cut(s)	411
BseLI	CCNNNNNNNGG	2 cut(s)	356, 556
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	1 cut(s)	434
BseXI	GCAGC	1 cut(s)	707
BsgI	GTGCAG	1 cut(s)	265
BshFI	GGCC	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	610
BslI	CCNNNNNNNGG	2 cut(s)	356, 556
BsnI	GGCC	1 cut(s)	142
BsoBI	CYCGRG	1 cut(s)	99
Bsp143I	GATC	3 cut(s)	52, 535, 618
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	1 cut(s)	435
BspLI	GGNNCC	2 cut(s)	315, 393
BspPI	GGATC	2 cut(s)	60, 626
BsrDI	GCAATG	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	705
BssMI	GATC	3 cut(s)	52, 535, 618
BssT1I	CCWWGG	1 cut(s)	705
Bst2UI	CCWGG	3 cut(s)	318, 357, 386
Bst4CI	ACNGT	5 cut(s)	175, 246, 338, 436, 454
Bst6I	CTCTTC	2 cut(s)	234, 705
BstC8I	GCNNGC	2 cut(s)	155, 215
BstDEI	CTNAG	2 cut(s)	132, 443
BstF5I	GGATG	1 cut(s)	411
BstHHI	GCGC	2 cut(s)	213, 480
BstKTI	GATC	3 cut(s)	55, 538, 621
BstMBI	GATC	3 cut(s)	52, 535, 618
BstMWI	GCNNNNNNNGC	1 cut(s)	551
BstNI	CCWGG	3 cut(s)	318, 357, 386
BstNSI	RCATGY	3 cut(s)	9, 366, 373
BstSCI	CCNGG	4 cut(s)	316, 355, 384, 609
BstSFI	CTRYAG	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	707
BstX2I	RGATCY	2 cut(s)	52, 618
BstYI	RGATCY	2 cut(s)	52, 618
BsuI	GTATCC	1 cut(s)	617
BsuRI	GGCC	1 cut(s)	142
BtgZI	GCGATG	1 cut(s)	569
BtsCI	GGATG	1 cut(s)	411
BtsI	GCAGTG	1 cut(s)	89
BtsIMutI	CAGTG	3 cut(s)	89, 282, 459
Cac8I	GCNNGC	2 cut(s)	155, 215
CfoI	GCGC	2 cut(s)	213, 480
Cfr13I	GGNCC	2 cut(s)	320, 392
Csp6I	GTAC	1 cut(s)	400
CviAII	CATG	6 cut(s)	6, 63, 363, 370, 615, 634
CviJI	RGCY	6 cut(s)	26, 142, 190, 447, 698, 724
CviKI_1	RGCY	6 cut(s)	26, 142, 190, 447, 698, 724
CviQI	GTAC	1 cut(s)	400
DdeI	CTNAG	2 cut(s)	132, 443
DpnI	GATC	3 cut(s)	54, 537, 620
DpnII	GATC	3 cut(s)	52, 535, 618
Eam1104I	CTCTTC	2 cut(s)	234, 705
EarI	CTCTTC	2 cut(s)	234, 705
Eco130I	CCWWGG	1 cut(s)	705
Eco32I	GATATC	1 cut(s)	277
Eco47I	GGWCC	2 cut(s)	320, 392
Eco57I	CTGAAG	2 cut(s)	41, 306
Eco88I	CYCGRG	1 cut(s)	99
EcoO109I	RGGNCCY	1 cut(s)	320
EcoRII	CCWGG	3 cut(s)	316, 355, 384
EcoRV	GATATC	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	705
ErhI	CCWWGG	1 cut(s)	705
FaeI	CATG	6 cut(s)	9, 66, 366, 373, 618, 637
FatI	CATG	6 cut(s)	5, 62, 362, 369, 614, 633
FblI	GTMKAC	1 cut(s)	588
Fnu4HI	GCNGC	1 cut(s)	696
FokI	GGATG	1 cut(s)	418
Fsp4HI	GCNGC	1 cut(s)	696
FspBI	CTAG	1 cut(s)	240
GlaI	GCGC	2 cut(s)	212, 479
GluI	GCNGC	1 cut(s)	696
GsuI	CTGGAG	2 cut(s)	62, 407
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	1 cut(s)	610
HhaI	GCGC	2 cut(s)	213, 480
Hin1II	CATG	6 cut(s)	9, 66, 366, 373, 618, 637
Hin6I	GCGC	2 cut(s)	211, 478
HinP1I	GCGC	2 cut(s)	211, 478
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	1 cut(s)	485
HpaII	CCGG	1 cut(s)	610
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	2 cut(s)	421, 589
Hpy188I	TCNGA	4 cut(s)	21, 307, 444, 540
Hpy188III	TCNNGA	2 cut(s)	41, 395
Hpy8I	GTNNAC	2 cut(s)	421, 589
HpyAV	CCTTC	4 cut(s)	16, 153, 635, 644
HpyCH4III	ACNGT	5 cut(s)	175, 246, 338, 436, 454
HpyCH4V	TGCA	5 cut(s)	59, 82, 153, 282, 695
HpyF10VI	GCNNNNNNNGC	1 cut(s)	551
HpyF3I	CTNAG	2 cut(s)	132, 443
Hsp92II	CATG	6 cut(s)	9, 66, 366, 373, 618, 637
HspAI	GCGC	2 cut(s)	211, 478
Kzo9I	GATC	3 cut(s)	52, 535, 618
LmnI	GCTCC	1 cut(s)	359
Lsp1109I	GCAGC	1 cut(s)	707
LweI	GCATC	2 cut(s)	68, 682
MaeI	CTAG	1 cut(s)	240
MaeIII	GTNAC	2 cut(s)	175, 365
MalI	GATC	3 cut(s)	54, 537, 620
MboI	GATC	3 cut(s)	52, 535, 618
MboII	GAAGA	5 cut(s)	221, 224, 299, 650, 722
MflI	RGATCY	2 cut(s)	52, 618
MluCI	AATT	1 cut(s)	428
MnlI	CCTC	5 cut(s)	7, 37, 382, 450, 706
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	2 cut(s)	204, 342
MspI	CCGG	1 cut(s)	610
MspR9I	CCNGG	4 cut(s)	318, 357, 386, 611
MvaI	CCWGG	3 cut(s)	318, 357, 386
MwoI	GCNNNNNNNGC	1 cut(s)	551
NciI	CCSGG	1 cut(s)	611
NdeII	GATC	3 cut(s)	52, 535, 618
NlaIII	CATG	6 cut(s)	9, 66, 366, 373, 618, 637
NlaIV	GGNNCC	2 cut(s)	315, 393
NmuCI	GTSAC	1 cut(s)	365
NspI	RCATGY	3 cut(s)	9, 366, 373
PciI	ACATGT	1 cut(s)	5
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	485
PfoI	TCCNGGA	1 cut(s)	316
PkrI	GCNGC	1 cut(s)	697
PpuMI	RGGWCCY	1 cut(s)	320
PscI	ACATGT	1 cut(s)	5
Psp5II	RGGWCCY	1 cut(s)	320
Psp6I	CCWGG	3 cut(s)	316, 355, 384
PspGI	CCWGG	3 cut(s)	316, 355, 384
PspN4I	GGNNCC	2 cut(s)	315, 393
PspPI	GGNCC	2 cut(s)	320, 392
PspPPI	RGGWCCY	1 cut(s)	320
PsuI	RGATCY	2 cut(s)	52, 618
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
SaqAI	TTAA	2 cut(s)	204, 342
SatI	GCNGC	1 cut(s)	696
Sau3AI	GATC	3 cut(s)	52, 535, 618
Sau96I	GGNCC	2 cut(s)	320, 392
ScrFI	CCNGG	4 cut(s)	318, 357, 386, 611
SetI	ASST	9 cut(s)	18, 163, 192, 203, 325, 387, 573, 655, 717
SfaNI	GCATC	2 cut(s)	68, 682
SfcI	CTRYAG	1 cut(s)	329
SinI	GGWCC	2 cut(s)	320, 392
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	1 cut(s)	428
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	4 cut(s)	316, 355, 384, 609
StyI	CCWWGG	1 cut(s)	705
TaaI	ACNGT	5 cut(s)	175, 246, 338, 436, 454
TaqI	TCGA	1 cut(s)	223
TasI	AATT	1 cut(s)	428
TatI	WGTACW	1 cut(s)	399
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	2 cut(s)	204, 342
Tru9I	TTAA	2 cut(s)	204, 342
TscAI	CASTG	3 cut(s)	89, 289, 459
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	1 cut(s)	695
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	4 cut(s)	259, 422, 622, 663
TspRI	CASTG	3 cut(s)	89, 289, 459
VpaK11BI	GGWCC	2 cut(s)	320, 392
XapI	RAATTY	1 cut(s)	428
XceI	RCATGY	3 cut(s)	9, 366, 373
XmiI	GTMKAC	1 cut(s)	588
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.