Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011227

Physical Location & Seq

Genomic Coordinates Reverse (-)

7549867 .. 7550615

Gene Structure 749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00085220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGACAGGTGATGAGGTTCTGAAGGCTGTTTTTCCTTATCTGGAGGGTGTGGATCTTGCATCATGTATGGGAGTGTGTAAGCAGTGGAGAAACATAGCCCGAGATGATTTCTTTTGGAAATGCTTGTGTGCTAAGAGATGGCCTTCTATCTGCAAACAACCTAACCCCCAACTACTGTCCTTTGATGACTTGGAGTTTTTCATTGATATCTGCACTGAAGATGGATTTATCTTTTCAGAAGTGGTTCCAGGACCTATCCTACAGAACGGTATTAAAATCCCACCACCAGGAGCATGTGACATGCTTAAGTTTCACCTGGAGGGTCCAGAGTACAGGATGAAACTCCCTGTTGACCCAAGATTTACTGTCCCTCAGAGCCAGACAGTGAGTGTTTCAGTCCTTGTGGGGCGCAAGGATTCTAATAGGGTTGCTTGTATCATCAATAAATCTAAGTTTGATTACATTGATCGAACAGCATACCGAGCGATGGCAAATGACTACCTTGACTTCTCTCCTGTCTACCCCTTTGTTTCGGGTATCCGGGCATGGATCTCATTGCTTTTCATGGAAGAAGGAAATGAAGGTGCTATTGATGTTTTTGGGATTGAAATGGATTTCTGTGATGCAGCCAGCTCCAAGGAAGAGGTTTTGTGGCTTTTAGATATGCTTGATTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

226

Amino Acids

25.74

Weight (kDa)

4.65

Isoelectric Point (pI)

51.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	4 - 44	4.2e-11	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39250 AT5G39250
fragaria_vesca	FvH4_6g47020 FvH4_6g47020
malus_domestica	MD09G1064500.v1.1
prunus_persica	Prupe.3G256500_v2.0.a1 Prupe.3G256500_v2.0.a1 Prupe.3G256500_v2.0.a1 Prupe.3G256500_v2.0.a1 Prupe.3G256500_v2.0.a1
pyrus_communis	pycom111g05420
rosa_chinensis	RchiOBHm_Chr2g0166081
rosa_laevigata	RLG00000021583
rosa_multiflora	Rmu_sc0006218.1_g000024
rosa_roxburghii	Rroxscaffold_2G00085220
rosa_samantha	Rh2AG586000 Rh2BG597800 Rh2CG568500 Rh2DG607900
rosa_wichuraiana	Rw2G048860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	519
AclWI	GGATC	2 cut(s)	60, 557
AcuI	CTGAAG	2 cut(s)	41, 237
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	2 cut(s)	287, 487
AflII	CTTAAG	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	608
AjnI	CCWGG	3 cut(s)	247, 286, 315
AluBI	AGCT	1 cut(s)	633
AluI	AGCT	1 cut(s)	633
AlwI	GGATC	2 cut(s)	60, 557
Ama87I	CYCGRG	1 cut(s)	99
AoxI	GGCC	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	626
Asp700I	GAANNNNTTC	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	411
AspS9I	GGNCC	2 cut(s)	251, 323
AsuC2I	CCSGG	1 cut(s)	542
AsuHPI	GGTGA	2 cut(s)	20, 305
AvaI	CYCGRG	1 cut(s)	99
AvaII	GGWCC	2 cut(s)	251, 323
BbvI	GCAGC	1 cut(s)	638
BccI	CCATC	3 cut(s)	132, 215, 481
BciT130I	CCWGG	3 cut(s)	249, 288, 317
BciVI	GTATCC	1 cut(s)	548
BcnI	CCSGG	1 cut(s)	542
BfmI	CTRYAG	1 cut(s)	260
BfrI	CTTAAG	1 cut(s)	305
BfuI	GTATCC	1 cut(s)	548
BisI	GCNGC	1 cut(s)	627
BlsI	GCNGC	1 cut(s)	628
Bme1390I	CCNGG	4 cut(s)	249, 288, 317, 542
Bme18I	GGWCC	2 cut(s)	251, 323
BmeT110I	CYCGRG	1 cut(s)	99
BmgT120I	GGNCC	2 cut(s)	251, 323
BmiI	GGNNCC	2 cut(s)	246, 324
BmrFI	CCNGG	4 cut(s)	249, 288, 317, 542
BmsI	GCATC	2 cut(s)	68, 613
BpmI	CTGGAG	2 cut(s)	62, 338
BpuMI	CCSGG	1 cut(s)	542
BsaJI	CCNNGG	1 cut(s)	636
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 487
Bse3DI	GCAATG	1 cut(s)	554
BseBI	CCWGG	3 cut(s)	249, 288, 317
BseDI	CCNNGG	1 cut(s)	636
BseGI	GGATG	1 cut(s)	342
BseLI	CCNNNNNNNGG	2 cut(s)	287, 487
BseMI	GCAATG	1 cut(s)	554
BseMII	CTCAG	1 cut(s)	386
BseXI	GCAGC	1 cut(s)	638
BsgI	GTGCAG	1 cut(s)	196
BshFI	GGCC	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	541
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	2 cut(s)	287, 487
BsmFI	GGGAC	1 cut(s)	353
BsnI	GGCC	1 cut(s)	142
BsoBI	CYCGRG	1 cut(s)	99
Bsp143I	GATC	3 cut(s)	52, 466, 549
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	246, 324
BspPI	GGATC	2 cut(s)	60, 557
BspTI	CTTAAG	1 cut(s)	305
BsrDI	GCAATG	1 cut(s)	554
BssECI	CCNNGG	1 cut(s)	636
BssMI	GATC	3 cut(s)	52, 466, 549
BssT1I	CCWWGG	1 cut(s)	636
Bst2UI	CCWGG	3 cut(s)	249, 288, 317
Bst4CI	ACNGT	4 cut(s)	177, 269, 367, 385
Bst6I	CTCTTC	1 cut(s)	636
BstAFI	CTTAAG	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	631
BstDEI	CTNAG	3 cut(s)	132, 372, 450
BstF5I	GGATG	1 cut(s)	342
BstHHI	GCGC	1 cut(s)	411
BstKTI	GATC	3 cut(s)	55, 469, 552
BstMBI	GATC	3 cut(s)	52, 466, 549
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNI	CCWGG	3 cut(s)	249, 288, 317
BstNSI	RCATGY	2 cut(s)	297, 304
BstSCI	CCNGG	4 cut(s)	247, 286, 315, 540
BstSFI	CTRYAG	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	638
BstX2I	RGATCY	2 cut(s)	52, 549
BstYI	RGATCY	2 cut(s)	52, 549
BsuI	GTATCC	1 cut(s)	548
BsuRI	GGCC	1 cut(s)	142
BtgZI	GCGATG	1 cut(s)	500
BtsCI	GGATG	1 cut(s)	342
BtsI	GCAGTG	1 cut(s)	89
BtsIMutI	CAGTG	3 cut(s)	89, 213, 390
Cac8I	GCNNGC	1 cut(s)	631
CfoI	GCGC	1 cut(s)	411
Cfr13I	GGNCC	2 cut(s)	251, 323
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	5 cut(s)	63, 294, 301, 546, 565
CviJI	RGCY	7 cut(s)	26, 98, 142, 378, 629, 633, 655
CviKI_1	RGCY	7 cut(s)	26, 98, 142, 378, 629, 633, 655
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	3 cut(s)	132, 372, 450
DpnI	GATC	3 cut(s)	54, 468, 551
DpnII	GATC	3 cut(s)	52, 466, 549
Eam1104I	CTCTTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	636
Eco130I	CCWWGG	1 cut(s)	636
Eco32I	GATATC	1 cut(s)	208
Eco47I	GGWCC	2 cut(s)	251, 323
Eco57I	CTGAAG	2 cut(s)	41, 237
Eco88I	CYCGRG	1 cut(s)	99
EcoO109I	RGGNCCY	1 cut(s)	251
EcoRII	CCWGG	3 cut(s)	247, 286, 315
EcoRV	GATATC	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	636
ErhI	CCWWGG	1 cut(s)	636
FaeI	CATG	5 cut(s)	66, 297, 304, 549, 568
FaiI	YATR	9 cut(s)	64, 68, 95, 295, 302, 478, 547, 566, 665
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	5 cut(s)	62, 293, 300, 545, 564
FblI	GTMKAC	1 cut(s)	519
Fnu4HI	GCNGC	1 cut(s)	627
FokI	GGATG	1 cut(s)	349
Fsp4HI	GCNGC	1 cut(s)	627
GlaI	GCGC	1 cut(s)	410
GluI	GCNGC	1 cut(s)	627
GsuI	CTGGAG	2 cut(s)	62, 338
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	1 cut(s)	541
HhaI	GCGC	1 cut(s)	411
Hin1II	CATG	5 cut(s)	66, 297, 304, 549, 568
Hin6I	GCGC	1 cut(s)	409
HinP1I	GCGC	1 cut(s)	409
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	1 cut(s)	416
HpaII	CCGG	1 cut(s)	541
HphI	GGTGA	2 cut(s)	20, 305
Hpy166II	GTNNAC	2 cut(s)	352, 520
Hpy188I	TCNGA	3 cut(s)	21, 238, 375
Hpy188III	TCNNGA	2 cut(s)	41, 326
Hpy8I	GTNNAC	2 cut(s)	352, 520
HpyAV	CCTTC	4 cut(s)	16, 153, 566, 575
HpyCH4III	ACNGT	4 cut(s)	177, 269, 367, 385
HpyCH4V	TGCA	4 cut(s)	59, 153, 213, 626
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	3 cut(s)	132, 372, 450
Hsp92II	CATG	5 cut(s)	66, 297, 304, 549, 568
HspAI	GCGC	1 cut(s)	409
Kzo9I	GATC	3 cut(s)	52, 466, 549
LmnI	GCTCC	2 cut(s)	290, 638
Lsp1109I	GCAGC	1 cut(s)	638
LweI	GCATC	2 cut(s)	68, 613
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	3 cut(s)	54, 468, 551
MboI	GATC	3 cut(s)	52, 466, 549
MboII	GAAGA	3 cut(s)	230, 581, 653
MflI	RGATCY	2 cut(s)	52, 549
MnlI	CCTC	5 cut(s)	7, 37, 313, 381, 637
MroXI	GAANNNNTTC	1 cut(s)	243
MseI	TTAA	2 cut(s)	273, 306
MspCI	CTTAAG	1 cut(s)	305
MspI	CCGG	1 cut(s)	541
MspR9I	CCNGG	4 cut(s)	249, 288, 317, 542
MvaI	CCWGG	3 cut(s)	249, 288, 317
MwoI	GCNNNNNNNGC	1 cut(s)	482
NciI	CCSGG	1 cut(s)	542
NdeII	GATC	3 cut(s)	52, 466, 549
NlaIII	CATG	5 cut(s)	66, 297, 304, 549, 568
NlaIV	GGNNCC	2 cut(s)	246, 324
NmuCI	GTSAC	1 cut(s)	296
NspI	RCATGY	2 cut(s)	297, 304
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	416
PfoI	TCCNGGA	1 cut(s)	247
PkrI	GCNGC	1 cut(s)	628
PpuMI	RGGWCCY	1 cut(s)	251
Psp5II	RGGWCCY	1 cut(s)	251
Psp6I	CCWGG	3 cut(s)	247, 286, 315
PspGI	CCWGG	3 cut(s)	247, 286, 315
PspN4I	GGNNCC	2 cut(s)	246, 324
PspPI	GGNCC	2 cut(s)	251, 323
PspPPI	RGGWCCY	1 cut(s)	251
PsuI	RGATCY	2 cut(s)	52, 549
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SaqAI	TTAA	2 cut(s)	273, 306
SatI	GCNGC	1 cut(s)	627
Sau3AI	GATC	3 cut(s)	52, 466, 549
Sau96I	GGNCC	2 cut(s)	251, 323
ScrFI	CCNGG	4 cut(s)	249, 288, 317, 542
SetI	ASST	9 cut(s)	10, 18, 163, 256, 318, 504, 586, 635, 648
SfaNI	GCATC	2 cut(s)	68, 613
SfcI	CTRYAG	1 cut(s)	260
SinI	GGWCC	2 cut(s)	251, 323
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
StyD4I	CCNGG	4 cut(s)	247, 286, 315, 540
StyI	CCWWGG	1 cut(s)	636
TaaI	ACNGT	4 cut(s)	177, 269, 367, 385
TaqI	TCGA	1 cut(s)	469
TatI	WGTACW	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	2 cut(s)	273, 306
Tru9I	TTAA	2 cut(s)	273, 306
TscAI	CASTG	3 cut(s)	89, 220, 390
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	1 cut(s)	626
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	4 cut(s)	190, 353, 553, 594
TspRI	CASTG	3 cut(s)	89, 220, 390
Vha464I	CTTAAG	1 cut(s)	305
VpaK11BI	GGWCC	2 cut(s)	251, 323
XceI	RCATGY	2 cut(s)	297, 304
XmiI	GTMKAC	1 cut(s)	519
XmnI	GAANNNNTTC	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.