AT5G40960

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016503
Physical Location & Seq
Reverse (-)
16412404 .. 16413202
799 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G40960.1

Sequence Viewer

Length: 207 bp
ATGCATGATTGGGCTGCACCGTTGATAGCTTCGGCTTTGTTCGCGTTTCTGTCGCCAGGGTTGATACTGCAGTTTCCGGGGAAAGAATCTCCGGTGGGTTTCATGAACATGAAGACGACGGTAGCTTCTATTTTCGTTCACACTGTTCTCTATGGTCTCTTTCTTATCCTCTTTCTCGTTGTTCTCAACGTCCATGTCTATGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

68

Amino Acids

7.48

Weight (kDa)

6.81

Isoelectric Point (pI)

47.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 1 - 67 1.9e-28 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40960 AT5G50560 AT5G50660
fragaria_vesca FvH4_6g53720
malus_domestica MD09G1009500.v1.1 MD17G1000900.v1.1
prunus_persica Prupe.3G307500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0175801
rosa_multiflora Rmu_sc0000998.1_g000005
rosa_rugosa Rorug02G0587800
rosa_samantha Rh2AG666800 Rh2BG678200 Rh2CG641200 Rh2DG691900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 44
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 2 cut(s) 29, 125
AluI AGCT 2 cut(s) 29, 125
Alw26I GTCTC 1 cut(s) 161
ApeKI GCWGC 1 cut(s) 14
AsuC2I CCSGG 1 cut(s) 78
BaeI ACNNNNGTAYC 2 cut(s) 56, 89
BbsI GAAGAC 1 cut(s) 119
BciT130I CCWGG 1 cut(s) 57
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 68
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme1390I CCNGG 2 cut(s) 57, 78
BmrFI CCNGG 2 cut(s) 57, 78
BpiI GAAGAC 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 2 cut(s) 56, 77
BsaWI WCCGGW 1 cut(s) 91
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 2 cut(s) 56, 77
Bsh1236I CGCG 1 cut(s) 44
BsiSI CCGG 2 cut(s) 77, 92
BsmAI GTCTC 1 cut(s) 161
Bso31I GGTCTC 1 cut(s) 161
BspFNI CGCG 1 cut(s) 44
BspHI TCATGA 1 cut(s) 102
BspMAI CTGCAG 1 cut(s) 72
BspTNI GGTCTC 1 cut(s) 161
BssECI CCNNGG 2 cut(s) 56, 77
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 3 cut(s) 21, 121, 145
BstFNI CGCG 1 cut(s) 44
BstMAI GTCTC 1 cut(s) 161
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 2 cut(s) 55, 76
BstSFI CTRYAG 1 cut(s) 68
BstUI CGCG 1 cut(s) 44
BstV2I GAAGAC 1 cut(s) 119
BtsIMutI CAGTG 1 cut(s) 141
CciI TCATGA 1 cut(s) 102
CviAII CATG 4 cut(s) 5, 103, 109, 194
CviJI RGCY 4 cut(s) 14, 29, 35, 125
CviKI_1 RGCY 4 cut(s) 14, 29, 35, 125
Eco31I GGTCTC 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 55
EcoT22I ATGCAT 2 cut(s) 6, 205
FaeI CATG 4 cut(s) 8, 106, 112, 197
FaiI YATR 7 cut(s) 6, 104, 110, 153, 195, 201, 205
FatI CATG 4 cut(s) 4, 102, 108, 193
Fnu4HI GCNGC 1 cut(s) 15
Fsp4HI GCNGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 15
HapII CCGG 2 cut(s) 77, 92
Hin1II CATG 4 cut(s) 8, 106, 112, 197
HinfI GANTC 1 cut(s) 86
HpaII CCGG 2 cut(s) 77, 92
Hpy166II GTNNAC 1 cut(s) 139
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 1 cut(s) 121
HpyCH4III ACNGT 3 cut(s) 21, 121, 145
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 4 cut(s) 4, 17, 70, 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 4 cut(s) 8, 106, 112, 197
LpnPI CCDG 4 cut(s) 42, 69, 90, 105
MaeII ACGT 1 cut(s) 189
MboII GAAGA 1 cut(s) 124
MnlI CCTC 1 cut(s) 179
Mph1103I ATGCAT 2 cut(s) 6, 205
MslI CAYNNNNRTG 2 cut(s) 107, 198
MspI CCGG 2 cut(s) 77, 92
MspR9I CCNGG 2 cut(s) 57, 78
MvaI CCWGG 1 cut(s) 57
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 1 cut(s) 41
NciI CCSGG 1 cut(s) 78
NlaIII CATG 4 cut(s) 8, 106, 112, 197
NsiI ATGCAT 2 cut(s) 6, 205
PagI TCATGA 1 cut(s) 102
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PstI CTGCAG 1 cut(s) 72
RseI CAYNNNNRTG 2 cut(s) 107, 198
SatI GCNGC 1 cut(s) 15
ScrFI CCNGG 2 cut(s) 57, 78
SetI ASST 3 cut(s) 31, 127, 192
SfcI CTRYAG 1 cut(s) 68
SmiMI CAYNNNNRTG 2 cut(s) 107, 198
StyD4I CCNGG 2 cut(s) 55, 76
TaaI ACNGT 3 cut(s) 21, 121, 145
TaiI ACGT 1 cut(s) 192
TfiI GAWTC 1 cut(s) 86
TscAI CASTG 1 cut(s) 148
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 3 cut(s) 91, 119, 125
TspRI CASTG 1 cut(s) 148
Zsp2I ATGCAT 2 cut(s) 6, 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.