MD17G1000900.v1.1

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0016503
Physical Location & Seq
Reverse (-)
40871 .. 42345
1475 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1000900.v1.1.491

Sequence Viewer

Length: 207 bp
ATGAAAGATTGGGCAGCTCCGCTGATAGCATCCGCGCTGTTTGCGTTTCTGTTGCCGGGATTGGTGTTTCAGATGCCGGGAAAGGAACGTCCCTTGGAATTCATGAACATGAAAACGAGCATCGCGTCGATGTTCTTGCACGCCGTGATCTATGGTTTGCTCCTCATTCTGTTTCTTATTATTCTTGACATTCACATCCATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

69

Amino Acids

7.65

Weight (kDa)

6.81

Isoelectric Point (pI)

35.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 1 - 67 5.2e-29 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40960 AT5G50560 AT5G50660
fragaria_vesca FvH4_6g53720
malus_domestica MD09G1009500.v1.1 MD17G1000900.v1.1
prunus_persica Prupe.3G307500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0175801
rosa_multiflora Rmu_sc0000998.1_g000005
rosa_rugosa Rorug02G0587800
rosa_samantha Rh2AG666800 Rh2BG678200 Rh2CG641200 Rh2DG691900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 35, 125
AciI CCGC 2 cut(s) 20, 33
AcsI RAATTY 1 cut(s) 98
AdeI CACNNNGTG 1 cut(s) 145
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 1 cut(s) 98
AspLEI GCGC 1 cut(s) 37
AsuC2I CCSGG 2 cut(s) 57, 78
BbvI GCAGC 1 cut(s) 26
BceAI ACGGC 1 cut(s) 128
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BcnI CCSGG 2 cut(s) 57, 78
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme1390I CCNGG 2 cut(s) 57, 78
BmrFI CCNGG 2 cut(s) 57, 78
BmsI GCATC 3 cut(s) 38, 63, 129
BpuMI CCSGG 2 cut(s) 57, 78
BsaJI CCNNGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 2 cut(s) 29, 195
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 26
Bsh1236I CGCG 2 cut(s) 35, 125
BsiSI CCGG 2 cut(s) 56, 77
BslFI GGGAC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 75
Bsp143I GATC 1 cut(s) 147
BspACI CCGC 2 cut(s) 20, 33
BspFNI CGCG 2 cut(s) 35, 125
BspHI TCATGA 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 204
BstF5I GGATG 2 cut(s) 29, 195
BstFNI CGCG 2 cut(s) 35, 125
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 1 cut(s) 150
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstSCI CCNGG 2 cut(s) 55, 76
BstUI CGCG 2 cut(s) 35, 125
BstV1I GCAGC 1 cut(s) 26
BtgZI GCGATG 1 cut(s) 106
BtsCI GGATG 2 cut(s) 29, 195
Cac8I GCNNGC 1 cut(s) 141
CciI TCATGA 1 cut(s) 102
CfoI GCGC 1 cut(s) 37
CseI GACGC 1 cut(s) 114
CviAII CATG 3 cut(s) 103, 109, 200
CviJI RGCY 1 cut(s) 17
CviKI_1 RGCY 1 cut(s) 17
DdeI CTNAG 1 cut(s) 204
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
DraIII CACNNNGTG 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 93
EcoRI GAATTC 1 cut(s) 98
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 3 cut(s) 106, 112, 203
FaiI YATR 4 cut(s) 104, 110, 153, 201
FaqI GGGAC 1 cut(s) 75
FatI CATG 3 cut(s) 102, 108, 199
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 2 cut(s) 16, 182
Fsp4HI GCNGC 1 cut(s) 15
GlaI GCGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 15
HapII CCGG 2 cut(s) 56, 77
HgaI GACGC 1 cut(s) 114
HhaI GCGC 1 cut(s) 37
Hin1II CATG 3 cut(s) 106, 112, 203
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HpaII CCGG 2 cut(s) 56, 77
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 2 cut(s) 103, 185
Hpy99I CGWCG 1 cut(s) 130
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 204
HpySE526I ACGT 1 cut(s) 88
Hsp92II CATG 3 cut(s) 106, 112, 203
HspAI GCGC 1 cut(s) 35
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 2 cut(s) 22, 165
LpnPI CCDG 2 cut(s) 69, 90
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 3 cut(s) 38, 63, 129
MaeII ACGT 1 cut(s) 88
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MluCI AATT 1 cut(s) 98
MnlI CCTC 1 cut(s) 173
MslI CAYNNNNRTG 2 cut(s) 107, 198
MspA1I CMGCKG 1 cut(s) 22
MspI CCGG 2 cut(s) 56, 77
MspR9I CCNGG 2 cut(s) 57, 78
MvnI CGCG 2 cut(s) 35, 125
MwoI GCNNNNNNNGC 1 cut(s) 41
NciI CCSGG 2 cut(s) 57, 78
NdeII GATC 1 cut(s) 147
NlaIII CATG 3 cut(s) 106, 112, 203
PagI TCATGA 1 cut(s) 102
PcsI WCGNNNNNNNCGW 1 cut(s) 122
PkrI GCNGC 1 cut(s) 16
RseI CAYNNNNRTG 2 cut(s) 107, 198
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 1 cut(s) 147
ScrFI CCNGG 2 cut(s) 57, 78
SetI ASST 2 cut(s) 19, 91
SfaNI GCATC 3 cut(s) 38, 63, 129
SmiMI CAYNNNNRTG 2 cut(s) 107, 198
Sse9I AATT 1 cut(s) 98
SsiI CCGC 2 cut(s) 20, 33
StyD4I CCNGG 2 cut(s) 55, 76
StyI CCWWGG 1 cut(s) 93
TaiI ACGT 1 cut(s) 91
TaqI TCGA 1 cut(s) 128
TasI AATT 1 cut(s) 98
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 4 cut(s) 17, 91, 119, 125
XapI RAATTY 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.