Rh2BG678200

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0016503
Physical Location & Seq
Reverse (-)
88853783 .. 88854067
285 bp
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UTR
Exon/CDS
Intron
Rh2BG678200.1

Sequence Viewer

Length: 285 bp
ATGCCCCTTCTCTGTTCTTATTCTTCTGCTGAGCAAAGTAAGGAGCTAGCTGATCAAACTGAGAGGACTTCATTTAGGATGAAAGACTATGCTGCTCTTCTGATAGCTTCGGCGCTGTTTGCATTTTTGTCACCAGGATTGGTGTTTCAAATGCCGGGGAAGGAGCGTCCCTTCGCATTCATGAACATGAAGACGAGCGTCGCCTCCATGTTCTTACACACTGTAATCTATGGTTTGCTCATGATTCTGTTTCTTGTTGTTCTCGACATTCACATCTATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

94

Amino Acids

10.59

Weight (kDa)

6.71

Isoelectric Point (pI)

48.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 27 - 93 1.3e-27 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40960 AT5G50560 AT5G50660
fragaria_vesca FvH4_6g53720
malus_domestica MD09G1009500.v1.1 MD17G1000900.v1.1
prunus_persica Prupe.3G307500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0175801
rosa_multiflora Rmu_sc0000998.1_g000005
rosa_rugosa Rorug02G0587800
rosa_samantha Rh2AG666800 Rh2BG678200 Rh2CG641200 Rh2DG691900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 149
AjnI CCWGG 1 cut(s) 133
AluBI AGCT 3 cut(s) 46, 50, 107
AluI AGCT 3 cut(s) 46, 50, 107
ApeKI GCWGC 1 cut(s) 92
AspLEI GCGC 1 cut(s) 115
AsuC2I CCSGG 1 cut(s) 156
AsuHPI GGTGA 1 cut(s) 123
AsuNHI GCTAGC 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 79
BciT130I CCWGG 1 cut(s) 135
BclI TGATCA 1 cut(s) 52
BcnI CCSGG 1 cut(s) 156
BfaI CTAG 1 cut(s) 47
BfoI RGCGCY 1 cut(s) 116
BisI GCNGC 1 cut(s) 93
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 94
Bme1390I CCNGG 2 cut(s) 135, 156
BmrFI CCNGG 2 cut(s) 135, 156
BmtI GCTAGC 1 cut(s) 50
BoxI GACNNNNGTC 1 cut(s) 197
BpiI GAAGAC 1 cut(s) 197
Bpu1102I GCTNAGC 1 cut(s) 30
BpuMI CCSGG 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 155
BseBI CCWGG 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 155
BseGI GGATG 1 cut(s) 84
BseMII CTCAG 2 cut(s) 21, 51
BseXI GCAGC 1 cut(s) 79
BsiSI CCGG 1 cut(s) 155
BslFI GGGAC 1 cut(s) 153
BsmFI GGGAC 1 cut(s) 153
BsmI GAATGC 1 cut(s) 176
Bsp143I GATC 1 cut(s) 52
Bsp1720I GCTNAGC 1 cut(s) 30
BspCNI CTCAG 2 cut(s) 22, 52
BspHI TCATGA 2 cut(s) 180, 240
BspOI GCTAGC 1 cut(s) 50
BspQI GCTCTTC 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 155
BssMI GATC 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 223
Bst6I CTCTTC 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 3 cut(s) 30, 60, 282
BstF5I GGATG 1 cut(s) 84
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 1 cut(s) 55
BstMBI GATC 1 cut(s) 52
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNI CCWGG 1 cut(s) 135
BstPAI GACNNNNGTC 1 cut(s) 197
BstSCI CCNGG 2 cut(s) 133, 154
BstV1I GCAGC 1 cut(s) 79
BstV2I GAAGAC 1 cut(s) 197
BtsCI GGATG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 48
CciI TCATGA 2 cut(s) 180, 240
CfoI GCGC 1 cut(s) 115
CseI GACGC 2 cut(s) 155, 187
CviAII CATG 4 cut(s) 181, 187, 208, 241
CviJI RGCY 3 cut(s) 46, 50, 107
CviKI_1 RGCY 3 cut(s) 46, 50, 107
DdeI CTNAG 3 cut(s) 30, 60, 282
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 133
FaeI CATG 4 cut(s) 184, 190, 211, 244
FaiI YATR 7 cut(s) 90, 182, 188, 209, 231, 242, 279
FaqI GGGAC 1 cut(s) 153
FatI CATG 4 cut(s) 180, 186, 207, 240
FbaI TGATCA 1 cut(s) 52
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 93
FspBI CTAG 1 cut(s) 47
GlaI GCGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 93
HaeII RGCGCY 1 cut(s) 116
HapII CCGG 1 cut(s) 155
HgaI GACGC 2 cut(s) 155, 187
HhaI GCGC 1 cut(s) 115
Hin1II CATG 4 cut(s) 184, 190, 211, 244
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HinfI GANTC 1 cut(s) 244
HpaII CCGG 1 cut(s) 155
HphI GGTGA 1 cut(s) 123
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 3 cut(s) 181, 241, 263
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 3 cut(s) 17, 154, 181
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4V TGCA 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 3 cut(s) 30, 60, 282
Hsp92II CATG 4 cut(s) 184, 190, 211, 244
HspAI GCGC 1 cut(s) 113
Ksp22I TGATCA 1 cut(s) 52
Kzo9I GATC 1 cut(s) 52
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 2 cut(s) 43, 163
LpnPI CCDG 3 cut(s) 120, 147, 168
Lsp1109I GCAGC 1 cut(s) 79
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 129
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MboII GAAGA 3 cut(s) 15, 89, 202
MnlI CCTC 2 cut(s) 57, 214
MslI CAYNNNNRTG 2 cut(s) 185, 276
MspI CCGG 1 cut(s) 155
MspR9I CCNGG 2 cut(s) 135, 156
Mva1269I GAATGC 1 cut(s) 176
MvaI CCWGG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 119
NciI CCSGG 1 cut(s) 156
NdeII GATC 1 cut(s) 52
NheI GCTAGC 1 cut(s) 46
NlaIII CATG 4 cut(s) 184, 190, 211, 244
NmuCI GTSAC 1 cut(s) 129
PagI TCATGA 2 cut(s) 180, 240
PciSI GCTCTTC 1 cut(s) 102
PctI GAATGC 1 cut(s) 176
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 1 cut(s) 94
PshAI GACNNNNGTC 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
RseI CAYNNNNRTG 2 cut(s) 185, 276
SapI GCTCTTC 1 cut(s) 102
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 1 cut(s) 52
ScrFI CCNGG 2 cut(s) 135, 156
SetI ASST 3 cut(s) 48, 52, 109
SmiMI CAYNNNNRTG 2 cut(s) 185, 276
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 2 cut(s) 133, 154
TaaI ACNGT 1 cut(s) 223
TaqI TCGA 1 cut(s) 264
TfiI GAWTC 1 cut(s) 244
TscAI CASTG 1 cut(s) 226
TseFI GTSAC 1 cut(s) 129
TseI GCWGC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 129
TspDTI ATGAA 5 cut(s) 60, 95, 169, 197, 203
TspRI CASTG 1 cut(s) 226
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.