MD09G1009500.v1.1

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0016503
Physical Location & Seq
Forward (+)
668910 .. 669116
207 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1009500.v1.1.491

Sequence Viewer

Length: 207 bp
ATGAAAAATTGGGCAGCTCCGCTGATAGCATCCGCGCTATTTGCGTTTCTGTCGCCAGGATTGGTGTTTCAGATGCCCGGCAGGGAACGTCCCTTCGAACTCATGAACATGAAAACGAGCATCGCATCGATATTGTTGCACGCCGTGATCTATGGTTTGCTCATCATTCTGTTTCTTGTTATTCTTGACATTCACGTCTATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

69

Amino Acids

7.6

Weight (kDa)

8.23

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 1 - 67 6.1e-29 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40960 AT5G50560 AT5G50660
fragaria_vesca FvH4_6g53720
malus_domestica MD09G1009500.v1.1 MD17G1000900.v1.1
prunus_persica Prupe.3G307500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0175801
rosa_multiflora Rmu_sc0000998.1_g000005
rosa_rugosa Rorug02G0587800
rosa_samantha Rh2AG666800 Rh2BG678200 Rh2CG641200 Rh2DG691900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 194
AccII CGCG 1 cut(s) 35
AciI CCGC 2 cut(s) 20, 33
AdeI CACNNNGTG 1 cut(s) 145
AjiI CACGTC 1 cut(s) 196
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 14
AspLEI GCGC 1 cut(s) 37
AsuC2I CCSGG 1 cut(s) 78
AsuII TTCGAA 1 cut(s) 96
BbvI GCAGC 1 cut(s) 26
BceAI ACGGC 1 cut(s) 128
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 1 cut(s) 57
BcnI CCSGG 1 cut(s) 78
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme1390I CCNGG 2 cut(s) 57, 78
BmgBI CACGTC 1 cut(s) 196
BmrFI CCNGG 2 cut(s) 57, 78
BmsI GCATC 4 cut(s) 38, 63, 129, 134
Bpu14I TTCGAA 1 cut(s) 96
BpuMI CCSGG 1 cut(s) 78
Bsa29I ATCGAT 1 cut(s) 128
BseBI CCWGG 1 cut(s) 57
BseCI ATCGAT 1 cut(s) 128
BseGI GGATG 1 cut(s) 29
BseXI GCAGC 1 cut(s) 26
Bsh1236I CGCG 1 cut(s) 35
BshVI ATCGAT 1 cut(s) 128
BsiSI CCGG 1 cut(s) 78
BslFI GGGAC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 75
Bsp119I TTCGAA 1 cut(s) 96
Bsp143I GATC 1 cut(s) 147
BspACI CCGC 2 cut(s) 20, 33
BspDI ATCGAT 1 cut(s) 128
BspFNI CGCG 1 cut(s) 35
BspHI TCATGA 1 cut(s) 102
BspT104I TTCGAA 1 cut(s) 96
BssMI GATC 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 57
BstBI TTCGAA 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 204
BstF5I GGATG 1 cut(s) 29
BstFNI CGCG 1 cut(s) 35
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 1 cut(s) 150
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 2 cut(s) 55, 76
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 1 cut(s) 26
Bsu15I ATCGAT 1 cut(s) 128
BsuTUI ATCGAT 1 cut(s) 128
BtgZI GCGATG 1 cut(s) 106
BtrI CACGTC 1 cut(s) 196
BtsCI GGATG 1 cut(s) 29
Cac8I GCNNGC 1 cut(s) 141
CciI TCATGA 1 cut(s) 102
CfoI GCGC 1 cut(s) 37
ClaI ATCGAT 1 cut(s) 128
CviAII CATG 2 cut(s) 103, 109
CviJI RGCY 1 cut(s) 17
CviKI_1 RGCY 1 cut(s) 17
DdeI CTNAG 1 cut(s) 204
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
DraIII CACNNNGTG 1 cut(s) 145
DrdI GACNNNNNNGTC 1 cut(s) 194
DseDI GACNNNNNNGTC 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 55
FaeI CATG 2 cut(s) 106, 112
FaiI YATR 4 cut(s) 104, 110, 153, 201
FaqI GGGAC 1 cut(s) 75
FatI CATG 2 cut(s) 102, 108
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 1 cut(s) 16
Fsp4HI GCNGC 1 cut(s) 15
GlaI GCGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 15
HapII CCGG 1 cut(s) 78
HhaI GCGC 1 cut(s) 37
Hin1II CATG 2 cut(s) 106, 112
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HpaII CCGG 1 cut(s) 78
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 2 cut(s) 103, 185
HpyAV CCTTC 1 cut(s) 103
HpyCH4IV ACGT 2 cut(s) 88, 195
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 204
HpySE526I ACGT 2 cut(s) 88, 195
Hsp92II CATG 2 cut(s) 106, 112
HspAI GCGC 1 cut(s) 35
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 4 cut(s) 42, 67, 69, 91
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 4 cut(s) 38, 63, 129, 134
MaeII ACGT 2 cut(s) 88, 195
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MluCI AATT 1 cut(s) 7
MslI CAYNNNNRTG 2 cut(s) 107, 198
MspA1I CMGCKG 1 cut(s) 22
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 2 cut(s) 57, 78
MvaI CCWGG 1 cut(s) 57
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 41
NciI CCSGG 1 cut(s) 78
NdeII GATC 1 cut(s) 147
NlaIII CATG 2 cut(s) 106, 112
NspV TTCGAA 1 cut(s) 96
PagI TCATGA 1 cut(s) 102
PkrI GCNGC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
RseI CAYNNNNRTG 2 cut(s) 107, 198
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 1 cut(s) 147
ScrFI CCNGG 2 cut(s) 57, 78
SetI ASST 3 cut(s) 19, 91, 198
SfaNI GCATC 4 cut(s) 38, 63, 129, 134
SfuI TTCGAA 1 cut(s) 96
SmiMI CAYNNNNRTG 2 cut(s) 107, 198
Sse9I AATT 1 cut(s) 7
SsiI CCGC 2 cut(s) 20, 33
StyD4I CCNGG 2 cut(s) 55, 76
TaiI ACGT 2 cut(s) 91, 198
TaqI TCGA 2 cut(s) 96, 128
TasI AATT 1 cut(s) 7
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 3 cut(s) 17, 119, 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.