AT5G50560

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016503
Physical Location & Seq
Forward (+)
20579027 .. 20579633
607 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G50560.1

Sequence Viewer

Length: 204 bp
ATGACGGAGTGGCTTCCGGTGGTGGTCGCGACGGTGTTGTTTGTGGTGCTGAGCCCGGGATTGTTGTTTCAGGTTCCGGGAAACAACAACTTTGTAGACTTCGGGAAGATGGAAACGAGCGGATACTCAATCCTTCTCCACGCCTTCCTTTACTTTGGCCTTGTCACTGTCTTCACCGTCGTCATCCACTTTCCGGGCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

67

Amino Acids

7.39

Weight (kDa)

5.27

Isoelectric Point (pI)

24.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 1 - 63 1e-28 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40960 AT5G50560 AT5G50660
fragaria_vesca FvH4_6g53720
malus_domestica MD09G1009500.v1.1 MD17G1000900.v1.1
prunus_persica Prupe.3G307500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0175801
rosa_multiflora Rmu_sc0000998.1_g000005
rosa_rugosa Rorug02G0587800
rosa_samantha Rh2AG666800 Rh2BG678200 Rh2CG641200 Rh2DG691900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 120
AccI GTMKAC 1 cut(s) 96
AccII CGCG 1 cut(s) 29
AciI CCGC 1 cut(s) 120
AfiI CCNNNNNNNGG 1 cut(s) 193
Ama87I CYCGRG 1 cut(s) 55
AoxI GGCC 1 cut(s) 157
AsuC2I CCSGG 4 cut(s) 56, 57, 78, 195
AsuHPI GGTGA 1 cut(s) 166
AvaI CYCGRG 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 200
BanII GRGCYC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 163
BccI CCATC 1 cut(s) 103
BciVI GTATCC 1 cut(s) 116
BcnI CCSGG 4 cut(s) 56, 57, 78, 195
BfuI GTATCC 1 cut(s) 116
BlpI GCTNAGC 1 cut(s) 50
Bme1390I CCNGG 4 cut(s) 56, 57, 78, 195
BmeT110I CYCGRG 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 4 cut(s) 56, 57, 78, 195
BpiI GAAGAC 1 cut(s) 163
Bpu1102I GCTNAGC 1 cut(s) 50
BpuMI CCSGG 4 cut(s) 56, 57, 78, 195
BsaJI CCNNGG 1 cut(s) 55
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 1 cut(s) 183
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 41
BseSI GKGCMC 1 cut(s) 200
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 55
BsiSI CCGG 4 cut(s) 17, 56, 77, 194
BslI CCNNNNNNNGG 1 cut(s) 193
BsnI GGCC 1 cut(s) 159
BsoBI CYCGRG 1 cut(s) 55
Bsp1286I GDGCHC 2 cut(s) 56, 200
Bsp1720I GCTNAGC 1 cut(s) 50
Bsp68I TCGCGA 1 cut(s) 29
BspACI CCGC 1 cut(s) 120
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 42
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 75
BsrBI CCGCTC 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 55
Bst4CI ACNGT 3 cut(s) 34, 169, 178
BstDEI CTNAG 1 cut(s) 50
BstF5I GGATG 1 cut(s) 183
BstFNI CGCG 1 cut(s) 29
BstSCI CCNGG 4 cut(s) 54, 55, 76, 193
BstSLI GKGCMC 1 cut(s) 200
BstUI CGCG 1 cut(s) 29
BstV2I GAAGAC 1 cut(s) 163
BsuI GTATCC 1 cut(s) 116
BsuRI GGCC 1 cut(s) 159
BtsCI GGATG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 165
BtuMI TCGCGA 1 cut(s) 29
Cfr9I CCCGGG 1 cut(s) 55
CviJI RGCY 3 cut(s) 13, 54, 159
CviKI_1 RGCY 3 cut(s) 13, 54, 159
DdeI CTNAG 1 cut(s) 50
Eco24I GRGCYC 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 55
EcoT38I GRGCYC 1 cut(s) 56
FblI GTMKAC 1 cut(s) 96
FokI GGATG 1 cut(s) 170
FriOI GRGCYC 1 cut(s) 56
HaeIII GGCC 1 cut(s) 159
HapII CCGG 4 cut(s) 17, 56, 77, 194
HpaII CCGG 4 cut(s) 17, 56, 77, 194
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 1 cut(s) 97
Hpy188III TCNNGA 2 cut(s) 28, 103
Hpy8I GTNNAC 1 cut(s) 97
Hpy99I CGWCG 2 cut(s) 34, 182
HpyAV CCTTC 2 cut(s) 143, 154
HpyCH4III ACNGT 3 cut(s) 34, 169, 178
HpyF3I CTNAG 1 cut(s) 50
LpnPI CCDG 4 cut(s) 30, 56, 69, 90
MaeIII GTNAC 1 cut(s) 163
MbiI CCGCTC 1 cut(s) 120
MboII GAAGA 2 cut(s) 118, 163
MhlI GDGCHC 2 cut(s) 56, 200
MseI TTAA 1 cut(s) 202
MspI CCGG 4 cut(s) 17, 56, 77, 194
MspR9I CCNGG 4 cut(s) 56, 57, 78, 195
MvnI CGCG 1 cut(s) 29
NciI CCSGG 4 cut(s) 56, 57, 78, 195
NlaIV GGNNCC 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 163
NruI TCGCGA 1 cut(s) 29
PfoI TCCNGGA 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 75
RruI TCGCGA 1 cut(s) 29
SaqAI TTAA 1 cut(s) 202
ScrFI CCNGG 4 cut(s) 56, 57, 78, 195
SduI GDGCHC 2 cut(s) 56, 200
SetI ASST 1 cut(s) 75
SmaI CCCGGG 1 cut(s) 57
SsiI CCGC 1 cut(s) 120
StyD4I CCNGG 4 cut(s) 54, 55, 76, 193
TaaI ACNGT 3 cut(s) 34, 169, 178
Tru1I TTAA 1 cut(s) 202
Tru9I TTAA 1 cut(s) 202
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 163
TspGWI ACGGA 1 cut(s) 20
TspMI CCCGGG 1 cut(s) 55
TspRI CASTG 1 cut(s) 172
XmaI CCCGGG 1 cut(s) 55
XmiI GTMKAC 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.