FvH4_6g53720

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016503
Physical Location & Seq
Reverse (-)
39326587 .. 39328410
1824 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53720.t1

Sequence Viewer

Length: 246 bp
ATGAAAGACTATGCTGCTCTACTGATAGCTTCAGCGCTGTTTGCATTTTTGTCACCAGGATTGGTGTTTCAAATGCCGGGGAAGGAGCGTCCCTTCGCTTTCATGAACATGAAGACGAGCGTTGCCTCCATGTCCCGCAGAGTTAAATATAGCAGCGGACAATCTGAAGTTCTGAACTTAGAGAAATCTAAAATCTTTACCTTGACATCTGAATATGATGTTAGAATCAATATTCCTAATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

82

Amino Acids

9.08

Weight (kDa)

9.7

Isoelectric Point (pI)

61.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 1 - 44 6.1e-17 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40960 AT5G50560 AT5G50660
fragaria_vesca FvH4_6g53720
malus_domestica MD09G1009500.v1.1 MD17G1000900.v1.1
prunus_persica Prupe.3G307500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0175801
rosa_multiflora Rmu_sc0000998.1_g000005
rosa_rugosa Rorug02G0587800
rosa_samantha Rh2AG666800 Rh2BG678200 Rh2CG641200 Rh2DG691900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 136, 156
AcuI CTGAAG 2 cut(s) 15, 186
AfeI AGCGCT 1 cut(s) 36
AgsI TTSAA 1 cut(s) 71
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
Aor51HI AGCGCT 1 cut(s) 36
ApeKI GCWGC 2 cut(s) 14, 153
AspLEI GCGC 1 cut(s) 37
AsuC2I CCSGG 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 45
BbsI GAAGAC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 165
BciT130I CCWGG 1 cut(s) 57
BcnI CCSGG 1 cut(s) 78
BfoI RGCGCY 1 cut(s) 38
BisI GCNGC 2 cut(s) 15, 154
BlsI GCNGC 2 cut(s) 16, 155
Bme1390I CCNGG 2 cut(s) 57, 78
BmrFI CCNGG 2 cut(s) 57, 78
BpiI GAAGAC 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 165
BsiSI CCGG 1 cut(s) 77
BslFI GGGAC 2 cut(s) 75, 118
BsmFI GGGAC 2 cut(s) 75, 118
BspACI CCGC 2 cut(s) 136, 156
BspHI TCATGA 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 178
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 2 cut(s) 55, 76
BstV1I GCAGC 1 cut(s) 165
BstV2I GAAGAC 1 cut(s) 119
CciI TCATGA 1 cut(s) 102
CfoI GCGC 1 cut(s) 37
CseI GACGC 1 cut(s) 77
CviAII CATG 4 cut(s) 103, 109, 130, 243
CviJI RGCY 1 cut(s) 29
CviKI_1 RGCY 1 cut(s) 29
DdeI CTNAG 1 cut(s) 178
Eco47III AGCGCT 1 cut(s) 36
Eco57I CTGAAG 2 cut(s) 15, 186
EcoRII CCWGG 1 cut(s) 55
FaeI CATG 4 cut(s) 106, 112, 133, 246
FaiI YATR 7 cut(s) 12, 104, 110, 131, 150, 216, 244
FaqI GGGAC 2 cut(s) 75, 118
FatI CATG 4 cut(s) 102, 108, 129, 242
FauI CCCGC 1 cut(s) 143
Fnu4HI GCNGC 2 cut(s) 15, 154
Fsp4HI GCNGC 2 cut(s) 15, 154
GlaI GCGC 1 cut(s) 36
GluI GCNGC 2 cut(s) 15, 154
HaeII RGCGCY 1 cut(s) 38
HapII CCGG 1 cut(s) 77
HgaI GACGC 1 cut(s) 77
HhaI GCGC 1 cut(s) 37
Hin1II CATG 4 cut(s) 106, 112, 133, 246
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HinfI GANTC 1 cut(s) 225
HpaII CCGG 1 cut(s) 77
HphI GGTGA 1 cut(s) 45
Hpy188I TCNGA 3 cut(s) 166, 174, 211
Hpy188III TCNNGA 1 cut(s) 103
HpyAV CCTTC 2 cut(s) 76, 103
HpyCH4V TGCA 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 178
Hsp92II CATG 4 cut(s) 106, 112, 133, 246
HspAI GCGC 1 cut(s) 35
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 3 cut(s) 42, 69, 90
Lsp1109I GCAGC 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 51
MboII GAAGA 1 cut(s) 124
MnlI CCTC 1 cut(s) 136
MseI TTAA 1 cut(s) 144
MslI CAYNNNNRTG 1 cut(s) 107
MspA1I CMGCKG 1 cut(s) 156
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 2 cut(s) 57, 78
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 41
NciI CCSGG 1 cut(s) 78
NlaIII CATG 4 cut(s) 106, 112, 133, 246
NmuCI GTSAC 1 cut(s) 51
PagI TCATGA 1 cut(s) 102
PfeI GAWTC 1 cut(s) 225
PkrI GCNGC 2 cut(s) 16, 155
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
RseI CAYNNNNRTG 1 cut(s) 107
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 2 cut(s) 15, 154
ScrFI CCNGG 2 cut(s) 57, 78
SetI ASST 2 cut(s) 31, 203
SmiMI CAYNNNNRTG 1 cut(s) 107
SsiI CCGC 2 cut(s) 136, 156
SspI AATATT 1 cut(s) 232
StyD4I CCNGG 2 cut(s) 55, 76
TfiI GAWTC 1 cut(s) 225
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseFI GTSAC 1 cut(s) 51
TseI GCWGC 2 cut(s) 14, 153
Tsp45I GTSAC 1 cut(s) 51
TspDTI ATGAA 4 cut(s) 17, 91, 119, 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.