AT5G42655

Protein of unknown function (DUF616)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017131
Physical Location & Seq
Reverse (-)
17102027 .. 17102896
870 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42655.1

Sequence Viewer

Length: 390 bp
ATGGTCCAACCTCACGGCAGAGGAGGAGGAAAAGGAGCATTGATTTTCCGACGCACGCTCACGGAAGGACCCGAGAATAATTCAAGGATCGTAGGCAAAGCTGAGGGGTTCATAATCCCGCATGAAGACTTCGCTAACTCGGATTTTAACGTGATATACTTGACGTTGGAGACGCCTGAGTACACGGGGAGTGTTAGCATTAGGAGCCGAGACATGACACATAAATTGAAAGAGGTTATGGAGGTAGTGGGAGGGACAGGAGCTTTCGCCTTTGCTCGCGGAATCGCCATGTTTAATGAGATTGATGATCATGAGGAAGAAGCTGTAACCACTTACCGTGTTAAGCTTCTACTTAGATTTCCACATACTTCTCACGTAGATCCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF616 Dirigent

Protein Analysis

129

Amino Acids

14.37

Weight (kDa)

5.84

Isoelectric Point (pI)

25.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dirigent PF03018 15 - 116 5.3e-18 Dirigent-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42655 AT5G42655
fragaria_vesca FvH4_2g26081
malus_domestica MD03G1292000.v1.1 MD11G1306400.v1.1
prunus_persica Prupe.8G265000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0294451
rosa_laevigata RLG00000011868
rosa_roxburghii Rroxscaffold_7G00173320
rosa_samantha Rh6AG357300 Rh6BG364200 Rh6CG371300 Rh6DG358100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 279
AciI CCGC 2 cut(s) 119, 279
AclWI GGATC 2 cut(s) 95, 374
AcyI GRCGYC 1 cut(s) 173
AfaI GTAC 1 cut(s) 182
AgsI TTSAA 2 cut(s) 84, 229
AluBI AGCT 4 cut(s) 101, 263, 323, 346
AluI AGCT 4 cut(s) 101, 263, 323, 346
Alw26I GTCTC 2 cut(s) 164, 204
AlwI GGATC 2 cut(s) 95, 374
Ama87I CYCGRG 1 cut(s) 71
AspS9I GGNCC 2 cut(s) 4, 68
AvaI CYCGRG 1 cut(s) 71
AvaII GGWCC 2 cut(s) 4, 68
BbsI GAAGAC 1 cut(s) 132
BbvCI CCTCAGC 1 cut(s) 102
BceAI ACGGC 1 cut(s) 31
BclI TGATCA 1 cut(s) 307
BcoDI GTCTC 2 cut(s) 164, 204
Bme18I GGWCC 2 cut(s) 4, 68
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 2 cut(s) 4, 68
BmiI GGNNCC 2 cut(s) 70, 206
BpiI GAAGAC 1 cut(s) 132
Bpu10I CCTNAGC 1 cut(s) 102
BsaAI YACGTR 1 cut(s) 376
BsaHI GRCGYC 1 cut(s) 173
BseMII CTCAG 2 cut(s) 93, 168
BseRI GAGGAG 2 cut(s) 36, 39
Bsh1236I CGCG 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 71
BslFI GGGAC 1 cut(s) 268
BsmAI GTCTC 2 cut(s) 164, 204
BsmBI CGTCTC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 268
BsoBI CYCGRG 1 cut(s) 71
Bsp143I GATC 3 cut(s) 87, 307, 379
BspACI CCGC 2 cut(s) 119, 279
BspCNI CTCAG 2 cut(s) 94, 169
BspFNI CGCG 1 cut(s) 279
BspHI TCATGA 1 cut(s) 310
BspLI GGNNCC 2 cut(s) 70, 206
BspPI GGATC 2 cut(s) 95, 374
BssMI GATC 3 cut(s) 87, 307, 379
BssNI GRCGYC 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 338
BstACI GRCGYC 1 cut(s) 173
BstBAI YACGTR 1 cut(s) 376
BstC8I GCNNGC 2 cut(s) 56, 277
BstDEI CTNAG 3 cut(s) 102, 177, 353
BstFNI CGCG 1 cut(s) 279
BstKTI GATC 3 cut(s) 90, 310, 382
BstMAI GTCTC 2 cut(s) 164, 204
BstMBI GATC 3 cut(s) 87, 307, 379
BstMWI GCNNNNNNNGC 1 cut(s) 204
BstUI CGCG 1 cut(s) 279
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
Cac8I GCNNGC 2 cut(s) 56, 277
CciI TCATGA 1 cut(s) 310
Cfr13I GGNCC 2 cut(s) 4, 68
CseI GACGC 2 cut(s) 60, 181
Csp6I GTAC 1 cut(s) 181
CviAII CATG 4 cut(s) 122, 214, 289, 311
CviJI RGCY 5 cut(s) 101, 207, 263, 323, 346
CviKI_1 RGCY 5 cut(s) 101, 207, 263, 323, 346
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 3 cut(s) 102, 177, 353
DpnI GATC 3 cut(s) 89, 309, 381
DpnII GATC 3 cut(s) 87, 307, 379
Eco47I GGWCC 2 cut(s) 4, 68
Eco88I CYCGRG 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 68
Esp3I CGTCTC 1 cut(s) 164
FaeI CATG 4 cut(s) 125, 217, 292, 314
FaiI YATR 9 cut(s) 113, 123, 157, 215, 222, 239, 290, 312, 366
FaqI GGGAC 1 cut(s) 268
FatI CATG 4 cut(s) 121, 213, 288, 310
FauI CCCGC 1 cut(s) 126
FbaI TGATCA 1 cut(s) 307
HgaI GACGC 2 cut(s) 60, 181
Hin1I GRCGYC 1 cut(s) 173
Hin1II CATG 4 cut(s) 125, 217, 292, 314
HindIII AAGCTT 1 cut(s) 344
HinfI GANTC 1 cut(s) 282
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 2 cut(s) 50, 142
Hpy188III TCNNGA 1 cut(s) 311
Hpy8I GTNNAC 1 cut(s) 183
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4IV ACGT 3 cut(s) 150, 164, 375
HpyF10VI GCNNNNNNNGC 1 cut(s) 204
HpyF3I CTNAG 3 cut(s) 102, 177, 353
HpySE526I ACGT 3 cut(s) 150, 164, 375
Hsp92I GRCGYC 1 cut(s) 173
Hsp92II CATG 4 cut(s) 125, 217, 292, 314
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 3 cut(s) 87, 307, 379
LmnI GCTCC 3 cut(s) 35, 204, 260
LpnPI CCDG 2 cut(s) 189, 243
MaeII ACGT 3 cut(s) 150, 164, 375
MaeIII GTNAC 1 cut(s) 325
MalI GATC 3 cut(s) 89, 309, 381
MboI GATC 3 cut(s) 87, 307, 379
MboII GAAGA 2 cut(s) 137, 329
MflI RGATCY 1 cut(s) 379
MluCI AATT 2 cut(s) 79, 224
MmeI TCCRAC 3 cut(s) 31, 73, 147
MnlI CCTC 9 cut(s) 14, 17, 20, 21, 97, 226, 235, 245, 307
MseI TTAA 3 cut(s) 147, 294, 342
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 1 cut(s) 204
NdeII GATC 3 cut(s) 87, 307, 379
NlaIII CATG 4 cut(s) 125, 217, 292, 314
NlaIV GGNNCC 2 cut(s) 70, 206
NmeAIII GCCGAG 1 cut(s) 233
PagI TCATGA 1 cut(s) 310
PfeI GAWTC 1 cut(s) 282
Ppu21I YACGTR 1 cut(s) 376
PpuMI RGGWCCY 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 68
PspN4I GGNNCC 2 cut(s) 70, 206
PspPI GGNCC 2 cut(s) 4, 68
PspPPI RGGWCCY 1 cut(s) 68
PsuI RGATCY 1 cut(s) 379
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SaqAI TTAA 3 cut(s) 147, 294, 342
Sau3AI GATC 3 cut(s) 87, 307, 379
Sau96I GGNCC 2 cut(s) 4, 68
SinI GGWCC 2 cut(s) 4, 68
Sse9I AATT 2 cut(s) 79, 224
SsiI CCGC 2 cut(s) 119, 279
TaaI ACNGT 1 cut(s) 338
TaiI ACGT 3 cut(s) 153, 167, 378
TasI AATT 2 cut(s) 79, 224
TatI WGTACW 1 cut(s) 180
TfiI GAWTC 1 cut(s) 282
Tru1I TTAA 3 cut(s) 147, 294, 342
Tru9I TTAA 3 cut(s) 147, 294, 342
TspDTI ATGAA 2 cut(s) 100, 138
TspGWI ACGGA 1 cut(s) 77
VpaK11BI GGWCC 2 cut(s) 4, 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.