AT5G43050

Protein of unknown function (DUF565)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012174
Physical Location & Seq
Forward (+)
17267838 .. 17269172
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G43050.1

Sequence Viewer

Length: 477 bp
ATGGCACATTCTTTGAGTTTCATCTCCACCAACTTGAACAGTTTAGTCCTTAACCATCATCAGTGCCAGAGTTTCGGAACGTTTGTGTCGTCGCCATTTAAACGAAAGAGGAGATTTGCAAGAAGCATTAGAGCTTTACAAGAGACTGAAGGTCCAACGCCAAGAAGATTGATAGACATTATAAGATCTGTTCCTGAAATCTCTAGGAATTACTTCAAGAAGCCTTCAAGAAGAACGCTTTTTGGAGGAATCTCGTTGTTAGGTGGCTTTTATGTCGCGCAGACTATCTCTCTCTCGTTTGGAGCATTGGGAGTGAACGATGTTATTGCTGCGGTTCTATGCGTTCTTTTGACAGAGTATGTGACAAGATTCTATTATAGCCGCACCACAGTCACATTTCCTATTGCTCTGCTCAATAATTTCAAGATGGGTTTCACTTATGGTCTCTTCATTGACGCCTTCAAGCTGGCTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF565

Protein Analysis

158

Amino Acids

17.8

Weight (kDa)

10.43

Isoelectric Point (pI)

53.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF565 PF04483 104 - 158 3.4e-19 Protein of unknown function (DUF565)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43050
fragaria_vesca FvH4_2g06230
malus_domestica MD05G1079400.v1.1
prunus_persica Prupe.8G123300_v2.0.a1 Prupe.8G123300_v2.0.a1 Prupe.8G123300_v2.0.a1 Prupe.8G123300_v2.0.a1
pyrus_communis pycom05g07250
rosa_chinensis RchiOBHm_Chr6g0256951
rosa_laevigata RLG00000014664
rosa_multiflora Rmu_co8075354.1_g000001 Rmu_sc0000659.1_g000043
rosa_roxburghii Rroxscaffold_7G00208360
rosa_rugosa Rorug05G0576200
rosa_samantha Rh6AG094800 Rh6BG086000 Rh6CG082100 Rh6DG077800
rosa_wichuraiana Rw6G008100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 182
AccII CGCG 1 cut(s) 278
AciI CCGC 2 cut(s) 332, 382
AclI AACGTT 1 cut(s) 80
AcuI CTGAAG 1 cut(s) 168
AcyI GRCGYC 1 cut(s) 456
AgsI TTSAA 5 cut(s) 37, 217, 228, 424, 463
AhdI GACNNNNNGTC 1 cut(s) 150
AluBI AGCT 3 cut(s) 134, 466, 474
AluI AGCT 3 cut(s) 134, 466, 474
Alw26I GTCTC 2 cut(s) 137, 449
ApeKI GCWGC 1 cut(s) 329
Asp700I GAANNNNTTC 1 cut(s) 212
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 1 cut(s) 152
AsuNHI GCTAGC 1 cut(s) 470
AvaII GGWCC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 316
BccI CCATC 2 cut(s) 63, 421
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BcoDI GTCTC 2 cut(s) 137, 449
BfaI CTAG 2 cut(s) 204, 471
BglII AGATCT 1 cut(s) 185
BisI GCNGC 2 cut(s) 330, 382
BlsI GCNGC 2 cut(s) 331, 383
Bme18I GGWCC 1 cut(s) 152
BmeRI GACNNNNNGTC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 152
BmtI GCTAGC 1 cut(s) 474
BsaHI GRCGYC 1 cut(s) 456
BsaI GGTCTC 1 cut(s) 449
BseRI GAGGAG 1 cut(s) 124
BseXI GCAGC 1 cut(s) 316
Bsh1236I CGCG 1 cut(s) 278
BsmAI GTCTC 2 cut(s) 137, 449
Bso31I GGTCTC 1 cut(s) 449
Bsp143I GATC 1 cut(s) 185
BspACI CCGC 2 cut(s) 332, 382
BspFNI CGCG 1 cut(s) 278
BspOI GCTAGC 1 cut(s) 474
BspTNI GGTCTC 1 cut(s) 449
BssMI GATC 1 cut(s) 185
BssNI GRCGYC 1 cut(s) 456
Bst4CI ACNGT 2 cut(s) 41, 391
Bst6I CTCTTC 1 cut(s) 452
BstACI GRCGYC 1 cut(s) 456
BstC8I GCNNGC 2 cut(s) 468, 472
BstFNI CGCG 1 cut(s) 278
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 1 cut(s) 188
BstMAI GTCTC 2 cut(s) 137, 449
BstMBI GATC 1 cut(s) 185
BstUI CGCG 1 cut(s) 278
BstV1I GCAGC 1 cut(s) 316
BstX2I RGATCY 1 cut(s) 185
BstYI RGATCY 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 68
Cac8I GCNNGC 2 cut(s) 468, 472
CfoI GCGC 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 152
CseI GACGC 1 cut(s) 464
CviJI RGCY 7 cut(s) 134, 223, 267, 381, 466, 470, 474
CviKI_1 RGCY 7 cut(s) 134, 223, 267, 381, 466, 470, 474
DpnI GATC 1 cut(s) 187
DpnII GATC 1 cut(s) 185
DraI TTTAAA 1 cut(s) 100
DriI GACNNNNNGTC 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 452
Eam1105I GACNNNNNGTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 452
Eco31I GGTCTC 1 cut(s) 449
Eco47I GGWCC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 168
FaiI YATR 6 cut(s) 182, 273, 340, 360, 378, 441
Fnu4HI GCNGC 2 cut(s) 330, 382
Fsp4HI GCNGC 2 cut(s) 330, 382
FspBI CTAG 2 cut(s) 204, 471
GlaI GCGC 1 cut(s) 279
GluI GCNGC 2 cut(s) 330, 382
HgaI GACGC 1 cut(s) 464
HhaI GCGC 1 cut(s) 280
Hin1I GRCGYC 1 cut(s) 456
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HinfI GANTC 2 cut(s) 249, 369
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 1 cut(s) 77
Hpy188III TCNNGA 4 cut(s) 194, 217, 228, 424
Hpy8I GTNNAC 1 cut(s) 316
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 3 cut(s) 143, 234, 469
HpyCH4III ACNGT 2 cut(s) 41, 391
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 1 cut(s) 119
HpySE526I ACGT 1 cut(s) 80
Hsp92I GRCGYC 1 cut(s) 456
HspAI GCGC 1 cut(s) 278
Kzo9I GATC 1 cut(s) 185
LmnI GCTCC 1 cut(s) 302
LpnPI CCDG 3 cut(s) 80, 207, 452
Lsp1109I GCAGC 1 cut(s) 316
MaeI CTAG 2 cut(s) 204, 471
MaeII ACGT 1 cut(s) 80
MaeIII GTNAC 2 cut(s) 361, 391
MalI GATC 1 cut(s) 187
MboI GATC 1 cut(s) 185
MboII GAAGA 3 cut(s) 177, 243, 439
MflI RGATCY 1 cut(s) 185
MluCI AATT 2 cut(s) 208, 418
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 2 cut(s) 102, 239
MroXI GAANNNNTTC 1 cut(s) 212
MseI TTAA 2 cut(s) 51, 99
MvnI CGCG 1 cut(s) 278
NdeII GATC 1 cut(s) 185
NheI GCTAGC 1 cut(s) 470
NmuCI GTSAC 2 cut(s) 361, 391
PcsI WCGNNNNNNNCGW 1 cut(s) 86
PdmI GAANNNNTTC 1 cut(s) 212
PfeI GAWTC 2 cut(s) 249, 369
PkrI GCNGC 2 cut(s) 331, 383
PsiI TTATAA 1 cut(s) 182
Psp1406I AACGTT 1 cut(s) 80
PspPI GGNCC 1 cut(s) 152
PsuI RGATCY 1 cut(s) 185
SaqAI TTAA 2 cut(s) 51, 99
SatI GCNGC 2 cut(s) 330, 382
Sau3AI GATC 1 cut(s) 185
Sau96I GGNCC 1 cut(s) 152
SetI ASST 6 cut(s) 83, 136, 154, 265, 468, 476
SinI GGWCC 1 cut(s) 152
Sse9I AATT 2 cut(s) 208, 418
SsiI CCGC 2 cut(s) 332, 382
SspMI CTAG 2 cut(s) 204, 471
TaaI ACNGT 2 cut(s) 41, 391
TaiI ACGT 1 cut(s) 83
TasI AATT 2 cut(s) 208, 418
TauI GCSGC 1 cut(s) 384
TfiI GAWTC 2 cut(s) 249, 369
Tru1I TTAA 2 cut(s) 51, 99
Tru9I TTAA 2 cut(s) 51, 99
TscAI CASTG 1 cut(s) 68
TseFI GTSAC 2 cut(s) 361, 391
TseI GCWGC 1 cut(s) 329
Tsp45I GTSAC 2 cut(s) 361, 391
TspDTI ATGAA 2 cut(s) 10, 439
TspRI CASTG 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 152
XmnI GAANNNNTTC 1 cut(s) 212
XspI CTAG 2 cut(s) 204, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.