Rh6DG077800

Protein of unknown function (DUF565)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0012174
Physical Location & Seq
Forward (+)
8833448 .. 8835264
1817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG077800.1

Sequence Viewer

Length: 468 bp
ATGGCTTGTTCGTTTAGTTTGCCATCAACAGGCCTCCATAAATTTGGATCGAGTCCTCAAAGCAGAGTTTCACACATGAAATATGGAGTCTTCACTTTGAGATCATCACCTGGGTTTCTTCGTGTCCGGGCCGTGCAAGAGAATGGAGGGTCCCGCAGACTAGTTGATATAATCAGAACTGTGCCAGAGCTCTCGAGGAACTACTTTCGAAGTCCATCTCGTAGGGCTCTCTTTGGGGGAATATCTTTGTTGGGTGGGTTTTATGTTGCCCAAACAATATCTCTGTCATTTGGAGCTTTAGGAGTCAATGATGTTATTGCTGCAGTTGTGTGTGTTCTCCTGACAGAATATGTAACCAAATTTTATTACAGCAGACCAAAAGTAACATTCCCTGTTGCTCTTCTCAACAATTTCAAAATGGGATTCACTTATGGTCTGTTCATAGATGCTTTTAAGCTTGCCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF565

Protein Analysis

155

Amino Acids

17.08

Weight (kDa)

10.33

Isoelectric Point (pI)

65.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF565 PF04483 101 - 155 1.5e-19 Protein of unknown function (DUF565)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43050
fragaria_vesca FvH4_2g06230
malus_domestica MD05G1079400.v1.1
prunus_persica Prupe.8G123300_v2.0.a1 Prupe.8G123300_v2.0.a1 Prupe.8G123300_v2.0.a1 Prupe.8G123300_v2.0.a1
pyrus_communis pycom05g07250
rosa_chinensis RchiOBHm_Chr6g0256951
rosa_laevigata RLG00000014664
rosa_multiflora Rmu_co8075354.1_g000001 Rmu_sc0000659.1_g000043
rosa_roxburghii Rroxscaffold_7G00208360
rosa_rugosa Rorug05G0576200
rosa_samantha Rh6AG094800 Rh6BG086000 Rh6CG082100 Rh6DG077800
rosa_wichuraiana Rw6G008100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 154
AclWI GGATC 1 cut(s) 55
AcsI RAATTY 2 cut(s) 41, 359
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 1 cut(s) 415
AhlI ACTAGT 1 cut(s) 160
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 3 cut(s) 190, 296, 457
AluI AGCT 3 cut(s) 190, 296, 457
Alw21I GWGCWC 1 cut(s) 192
AlwI GGATC 1 cut(s) 55
Ama87I CYCGRG 1 cut(s) 193
AoxI GGCC 2 cut(s) 31, 129
ApeKI GCWGC 1 cut(s) 320
ApoI RAATTY 2 cut(s) 41, 359
AspS9I GGNCC 2 cut(s) 129, 150
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 99
AsuII TTCGAA 1 cut(s) 208
AvaI CYCGRG 1 cut(s) 193
AvaII GGWCC 1 cut(s) 150
BanII GRGCYC 2 cut(s) 192, 229
BbsI GAAGAC 1 cut(s) 82
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 307
BccI CCATC 2 cut(s) 31, 223
BceAI ACGGC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 111
BcnI CCSGG 1 cut(s) 128
BcuI ACTAGT 1 cut(s) 160
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 321
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
Bme1390I CCNGG 2 cut(s) 111, 128
Bme18I GGWCC 1 cut(s) 150
BmeT110I CYCGRG 1 cut(s) 193
BmgT120I GGNCC 2 cut(s) 129, 150
BmiI GGNNCC 2 cut(s) 151, 152
BmrFI CCNGG 2 cut(s) 111, 128
BmsI GCATC 1 cut(s) 436
BpiI GAAGAC 1 cut(s) 82
Bpu14I TTCGAA 1 cut(s) 208
BpuMI CCSGG 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 110
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 462
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 110
BseLI CCNNNNNNNGG 1 cut(s) 29
BseNI ACTGG 1 cut(s) 462
BseXI GCAGC 1 cut(s) 307
BshFI GGCC 2 cut(s) 33, 131
BsiHKAI GWGCWC 1 cut(s) 192
BsiHKCI CYCGRG 1 cut(s) 193
BsiSI CCGG 1 cut(s) 127
BslFI GGGAC 1 cut(s) 136
BslI CCNNNNNNNGG 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 136
BsnI GGCC 2 cut(s) 33, 131
BsoBI CYCGRG 1 cut(s) 193
Bsp119I TTCGAA 1 cut(s) 208
Bsp1286I GDGCHC 2 cut(s) 192, 229
Bsp143I GATC 2 cut(s) 47, 101
BspACI CCGC 1 cut(s) 154
BspANI GGCC 2 cut(s) 33, 131
BspLI GGNNCC 2 cut(s) 151, 152
BspMAI CTGCAG 1 cut(s) 325
BspPI GGATC 1 cut(s) 55
BspQI GCTCTTC 1 cut(s) 405
BspT104I TTCGAA 1 cut(s) 208
BsrI ACTGG 1 cut(s) 462
BssECI CCNNGG 1 cut(s) 110
BssMI GATC 2 cut(s) 47, 101
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 405
BstBI TTCGAA 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 459
BstKTI GATC 2 cut(s) 50, 104
BstMBI GATC 2 cut(s) 47, 101
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 2 cut(s) 109, 126
BstSFI CTRYAG 1 cut(s) 321
BstV1I GCAGC 1 cut(s) 307
BstV2I GAAGAC 1 cut(s) 82
BstXI CCANNNNNNTGG 1 cut(s) 44
BsuRI GGCC 2 cut(s) 33, 131
Cac8I GCNNGC 1 cut(s) 459
Cfr13I GGNCC 2 cut(s) 129, 150
CviAII CATG 1 cut(s) 76
CviJI RGCY 7 cut(s) 5, 33, 131, 190, 227, 296, 457
CviKI_1 RGCY 7 cut(s) 5, 33, 131, 190, 227, 296, 457
DpnI GATC 2 cut(s) 49, 103
DpnII GATC 2 cut(s) 47, 101
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Ecl136II GAGCTC 1 cut(s) 190
Eco147I AGGCCT 1 cut(s) 33
Eco24I GRGCYC 2 cut(s) 192, 229
Eco47I GGWCC 1 cut(s) 150
Eco53kI GAGCTC 1 cut(s) 190
Eco88I CYCGRG 1 cut(s) 193
EcoICRI GAGCTC 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 150
EcoRII CCWGG 1 cut(s) 109
EcoT38I GRGCYC 2 cut(s) 192, 229
FaeI CATG 1 cut(s) 79
FaiI YATR 8 cut(s) 39, 77, 84, 170, 264, 351, 432, 443
FaqI GGGAC 1 cut(s) 136
FatI CATG 1 cut(s) 75
FauI CCCGC 1 cut(s) 161
Fnu4HI GCNGC 1 cut(s) 321
FriOI GRGCYC 2 cut(s) 192, 229
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 1 cut(s) 161
GluI GCNGC 1 cut(s) 321
HaeIII GGCC 2 cut(s) 33, 131
HapII CCGG 1 cut(s) 127
Hin1II CATG 1 cut(s) 79
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 4 cut(s) 52, 87, 303, 423
HpaII CCGG 1 cut(s) 127
HphI GGTGA 1 cut(s) 99
Hpy188I TCNGA 1 cut(s) 176
Hpy188III TCNNGA 2 cut(s) 193, 340
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 2 cut(s) 136, 323
Hsp92II CATG 1 cut(s) 79
KflI GGGWCCC 1 cut(s) 150
Kzo9I GATC 2 cut(s) 47, 101
LguI GCTCTTC 1 cut(s) 405
LmnI GCTCC 1 cut(s) 293
LpnPI CCDG 7 cut(s) 15, 96, 123, 140, 198, 353, 405
Lsp1109I GCAGC 1 cut(s) 307
LweI GCATC 1 cut(s) 436
MaeI CTAG 1 cut(s) 161
MaeIII GTNAC 2 cut(s) 352, 382
MalI GATC 2 cut(s) 49, 103
MboI GATC 2 cut(s) 47, 101
MboII GAAGA 3 cut(s) 82, 110, 392
MhlI GDGCHC 2 cut(s) 192, 229
MluCI AATT 3 cut(s) 41, 359, 409
MlyI GAGTC 3 cut(s) 61, 96, 312
MnlI CCTC 4 cut(s) 44, 66, 140, 189
MseI TTAA 1 cut(s) 453
MspI CCGG 1 cut(s) 127
MspR9I CCNGG 2 cut(s) 111, 128
MvaI CCWGG 1 cut(s) 111
NciI CCSGG 1 cut(s) 128
NdeII GATC 2 cut(s) 47, 101
NlaIII CATG 1 cut(s) 79
NlaIV GGNNCC 2 cut(s) 151, 152
NspV TTCGAA 1 cut(s) 208
PaeR7I CTCGAG 1 cut(s) 193
PceI AGGCCT 1 cut(s) 33
PciSI GCTCTTC 1 cut(s) 405
PfeI GAWTC 1 cut(s) 423
PkrI GCNGC 1 cut(s) 322
PleI GAGTC 3 cut(s) 60, 95, 311
PpsI GAGTC 3 cut(s) 60, 95, 311
PpuMI RGGWCCY 1 cut(s) 150
Psp124BI GAGCTC 1 cut(s) 192
Psp5II RGGWCCY 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 2 cut(s) 151, 152
PspPI GGNCC 2 cut(s) 129, 150
PspPPI RGGWCCY 1 cut(s) 150
PstI CTGCAG 1 cut(s) 325
SacI GAGCTC 1 cut(s) 192
SapI GCTCTTC 1 cut(s) 405
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 2 cut(s) 47, 101
Sau96I GGNCC 2 cut(s) 129, 150
SchI GAGTC 3 cut(s) 61, 96, 312
ScrFI CCNGG 2 cut(s) 111, 128
SduI GDGCHC 2 cut(s) 192, 229
SetI ASST 4 cut(s) 112, 192, 298, 459
SfaNI GCATC 1 cut(s) 436
SfcI CTRYAG 1 cut(s) 321
Sfr274I CTCGAG 1 cut(s) 193
SfuI TTCGAA 1 cut(s) 208
SinI GGWCC 1 cut(s) 150
SlaI CTCGAG 1 cut(s) 193
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
SpeI ACTAGT 1 cut(s) 160
Sse9I AATT 3 cut(s) 41, 359, 409
SseBI AGGCCT 1 cut(s) 33
SsiI CCGC 1 cut(s) 154
SspMI CTAG 1 cut(s) 161
SstI GAGCTC 1 cut(s) 192
StuI AGGCCT 1 cut(s) 33
StyD4I CCNGG 2 cut(s) 109, 126
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 3 cut(s) 50, 194, 208
TasI AATT 3 cut(s) 41, 359, 409
TfiI GAWTC 1 cut(s) 423
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TseI GCWGC 1 cut(s) 320
TspDTI ATGAA 2 cut(s) 92, 430
VpaK11BI GGWCC 1 cut(s) 150
XapI RAATTY 2 cut(s) 41, 359
XhoI CTCGAG 1 cut(s) 193
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.