AT5G43120

ARM-repeat Tetratricopeptide repeat (TPR)-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014532
Physical Location & Seq
Forward (+)
17312543 .. 17314579
2037 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G43120.2

Sequence Viewer

Length: 1767 bp
ATGGACCACTTCTCTTACAGGAATACAAACAAGATGGTCAGGACCCACGTTGTTGTCGGTTCCAGACCCTGTTGTTTCTCTTGTGCCATGGAGGAAAAAGACCCTTGTGTTAGAAAAGCATGGTTAGAGTTATCTCTGAGAGATATGCACATGATAAGAGATGATACAGAGCTTGCTCTCACGCTCAGTTTCATCTGGAGATACGCCATGGCAGACCCCGAGAACCCCGAGTTACCGTCTCTCGGTGTCTTTGAGTGCATGACAAGGTTGATGAAGAAAGGTCTTGAGGATGTAGAATGGGTAATGACTGGCCAAAATGTGTATGTTCCTTACTATGCAGCTCATATCATTGGATCTTACACCATGAAGAAGCCCGATTTTGCTACAAAAGCTGTGGAGTCTGGAGTCATAGCTCCATTGCTTGAGCTTATGAGAAGAAAGATGAGTTGGGTCGAGCAAAGAGTCGTCGTTAGGGCGTTAGGTCACTTGGCGAGCTACGAGACAACGTTTGAGGCAGTGGCTGCTTACGAGGATGAGGTGGTGAGATTAGCTATGGAGATTGCAATGACATGTGTTGATGTTGTATATGAAGAGTTTGTGAGTGTTCAAGAAAAAGAAGGAAGAGTGAGGTATCACAGTGACTTGCTTACTAGAGGACTTGGAGGGTTAGAGATGGAAGACCGAAAAGCCGAGGAATGGGCAAGCCAACTCCAATGCTGGTCACTTCATTTACTCAATTGCTTTGCTTACAAGCAAAAGTGTATTTCTCTTATTTGCAACAAAACATTTCTCAAGGAGCTTAGTCAAATGTGGGGTGGATTGGTTAACCACACTTCTCCTTCGGGCATCGGACTAATCCGGATTCTTTGTTATAGTAAACAAGGGCGAAGGCATGTATCGGGATCGAGAGAAATGATACTGAGTCTATGTAACCTCTCCCGGTCTTCTGATGATTGGCAATACATGGGGATAGATTGCCTTTTGCTGCTTCTTAAAGACCAAGCAACAAGGTACAATGTCTTAGAGATGTCATTGTTTTATCTAGTAGACCTAGTTGAGGTTAAAGCTCTTAACGTCAGAAAAAACTTAGGTGATAGAATAACTAAGGTTCTTTTAATGCATTACTGCAAGACAAAGAAAGGTTGTGCTTACTCTCACAAGGCCCAAAAAGCTTTGAAAGAACTATGGAGGAATAAAGTAGAAAGGAGAAGGAGGGAGAGAAAGTTTATGAGTAAGAATCAAGATTTTCTGAGAGAGACAAGTGTTGTTGTATATTTGATTAAGCAGCAAGCAAACCAACTTCTTCATGTAGGAGACATAGAGGGAGCTATTAAATGCTACACCGAAGCAATAGGCTTATGTCCTTTAAAACTTAGGAGAAAGAGAATGAATCTTTATAGCGAAAGAGGAGAGTGTTACTTACTTCTTGGAGATGTAGATGCGGCCATAAGTGATTGCACAAGAGCTCTTTGCTTGTCGGAACCAGTGAATTCTCATGGTAAGAGTCTTTGGACAAGGTCAAGAGCTTATGACATCAAAGGGCTTTCAAGAGAAAGCTTGATGGATTGTATCATGTTCGTCAATGGCCGCTGCTTTCGTGGTAATATCCCTTACTATGCTGCTCAAATGATAAGCAAACAGATGGAGGCTACGTGGCTGTTTGAAAAGGCTAGAGCATCAAAGCTTGGAAGAATGATGCTCAAGGAGAAATTTCACTTAACAGGTATATTCATTTTCTTATATATATGTATGAATATAAGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

588

Amino Acids

67.92

Weight (kDa)

8.94

Isoelectric Point (pI)

44.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_7 PF26524 21 - 260 3.5e-115 Plant ARM repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014532)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43120 AT5G43120
fragaria_vesca FvH4_2g33380
malus_domestica MD08G1088700.v1.1 MD15G1073700.v1.1
prunus_persica Prupe.1G426500_v2.0.a1
pyrus_communis pycom08g07210
rosa_chinensis RchiOBHm_Chr6g0309161
rosa_laevigata RLG00000010585
rosa_multiflora Rmu_sc0020102.1_g000005
rosa_roxburghii Rroxscaffold_7G00159600
rosa_rugosa Rorug06G0370100
rosa_samantha Rh6AG483000 Rh6BG492100 Rh6CG496800 Rh6DG483700
rosa_wichuraiana Rw6G042060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1047
AccIII TCCGGA 1 cut(s) 858
AciI CCGC 2 cut(s) 1442, 1588
AclI AACGTT 1 cut(s) 506
AclWI GGATC 2 cut(s) 361, 910
AcoI YGGCCR 3 cut(s) 310, 1443, 1585
AcsI RAATTY 2 cut(s) 1489, 1709
AfaI GTAC 1 cut(s) 1013
AfiI CCNNNNNNNGG 3 cut(s) 242, 696, 1057
AflIII ACRYGT 1 cut(s) 569
AgsI TTSAA 4 cut(s) 608, 1177, 1548, 1664
AjuI GAANNNNNNNTTGG 2 cut(s) 430, 462
Alw21I GWGCWC 1 cut(s) 1468
Alw26I GTCTC 4 cut(s) 243, 494, 1250, 1308
AlwI GGATC 2 cut(s) 361, 910
AlwNI CAGNNNCTG 2 cut(s) 69, 521
Ama87I CYCGRG 2 cut(s) 218, 227
Aor13HI TCCGGA 1 cut(s) 858
AoxI GGCC 4 cut(s) 310, 1161, 1443, 1585
ApeKI GCWGC 6 cut(s) 338, 521, 985, 1285, 1590, 1619
ApoI RAATTY 2 cut(s) 1489, 1709
AspS9I GGNCC 3 cut(s) 4, 42, 1162
AsuC2I CCSGG 1 cut(s) 940
AsuHPI GGTGA 2 cut(s) 553, 1103
AvaI CYCGRG 2 cut(s) 218, 227
AvaII GGWCC 2 cut(s) 4, 42
BalI TGGCCA 1 cut(s) 312
BanII GRGCYC 1 cut(s) 1468
BbsI GAAGAC 2 cut(s) 684, 936
Bbv12I GWGCWC 1 cut(s) 1468
BbvI GCAGC 6 cut(s) 350, 508, 972, 1297, 1577, 1606
BccI CCATC 4 cut(s) 28, 667, 1555, 1636
BcnI CCSGG 1 cut(s) 940
BcoDI GTCTC 4 cut(s) 243, 494, 1250, 1308
BfaI CTAG 4 cut(s) 651, 1043, 1052, 1671
BisI GCNGC 8 cut(s) 339, 522, 986, 1286, 1443, 1588, 1591, 1620
BlsI GCNGC 8 cut(s) 340, 523, 987, 1287, 1444, 1589, 1592, 1621
Bme1390I CCNGG 1 cut(s) 940
Bme18I GGWCC 2 cut(s) 4, 42
BmeT110I CYCGRG 2 cut(s) 218, 227
BmgT120I GGNCC 3 cut(s) 4, 42, 1162
BmiI GGNNCC 3 cut(s) 44, 61, 1482
BmrFI CCNGG 1 cut(s) 940
BmsI GCATC 4 cut(s) 855, 1429, 1685, 1686
BpiI GAAGAC 2 cut(s) 684, 936
BpmI CTGGAG 2 cut(s) 217, 423
BpuEI CTTGAG 4 cut(s) 305, 443, 776, 1685
BpuMI CCSGG 1 cut(s) 940
BsaAI YACGTR 1 cut(s) 1653
BsaJI CCNNGG 3 cut(s) 87, 207, 690
BsaWI WCCGGW 1 cut(s) 858
BsaXI ACNNNNNCTCC 4 cut(s) 1208, 1238, 1637, 1667
Bsc4I CCNNNNNNNGG 3 cut(s) 242, 696, 1057
Bse1I ACTGG 2 cut(s) 313, 1484
Bse3DI GCAATG 2 cut(s) 416, 570
BseAI TCCGGA 1 cut(s) 858
BseDI CCNNGG 3 cut(s) 87, 207, 690
BseGI GGATG 2 cut(s) 295, 538
BseLI CCNNNNNNNGG 3 cut(s) 242, 696, 1057
BseMI GCAATG 2 cut(s) 416, 570
BseMII CTCAG 4 cut(s) 128, 199, 911, 1241
BseNI ACTGG 2 cut(s) 313, 1484
BseRI GAGGAG 1 cut(s) 1422
BseXI GCAGC 6 cut(s) 350, 508, 972, 1297, 1577, 1606
BshFI GGCC 4 cut(s) 312, 1163, 1445, 1587
BsiHKAI GWGCWC 1 cut(s) 1468
BsiHKCI CYCGRG 2 cut(s) 218, 227
BsiSI CCGG 2 cut(s) 859, 940
BslI CCNNNNNNNGG 3 cut(s) 242, 696, 1057
BsmAI GTCTC 4 cut(s) 243, 494, 1250, 1308
BsmBI CGTCTC 1 cut(s) 243
BsnI GGCC 4 cut(s) 312, 1163, 1445, 1587
BsoBI CYCGRG 2 cut(s) 218, 227
Bsp1286I GDGCHC 1 cut(s) 1468
Bsp13I TCCGGA 1 cut(s) 858
Bsp143I GATC 2 cut(s) 353, 902
Bsp19I CCATGG 2 cut(s) 87, 207
BspACI CCGC 2 cut(s) 1442, 1588
BspANI GGCC 4 cut(s) 312, 1163, 1445, 1587
BspCNI CTCAG 4 cut(s) 129, 198, 912, 1242
BspEI TCCGGA 1 cut(s) 858
BspLI GGNNCC 3 cut(s) 44, 61, 1482
BspPI GGATC 2 cut(s) 361, 910
BsrDI GCAATG 2 cut(s) 416, 570
BsrI ACTGG 2 cut(s) 313, 1484
BssECI CCNNGG 3 cut(s) 87, 207, 690
BssMI GATC 2 cut(s) 353, 902
BssT1I CCWWGG 2 cut(s) 87, 207
Bst4CI ACNGT 2 cut(s) 237, 638
Bst6I CTCTTC 2 cut(s) 585, 616
BstAPI GCANNNNNTGC 1 cut(s) 521
BstBAI YACGTR 1 cut(s) 1653
BstC8I GCNNGC 4 cut(s) 174, 493, 703, 1290
BstDEI CTNAG 9 cut(s) 137, 185, 800, 920, 1021, 1087, 1104, 1250, 1373
BstDSI CCRYGG 2 cut(s) 87, 207
BstENI CCTNNNNNAGG 1 cut(s) 1055
BstF5I GGATG 2 cut(s) 295, 538
BstKTI GATC 2 cut(s) 356, 905
BstMAI GTCTC 4 cut(s) 243, 494, 1250, 1308
BstMBI GATC 2 cut(s) 353, 902
BstMWI GCNNNNNNNGC 3 cut(s) 389, 521, 1169
BstNSI RCATGY 2 cut(s) 573, 896
BstSCI CCNGG 1 cut(s) 938
BstV1I GCAGC 6 cut(s) 350, 508, 972, 1297, 1577, 1606
BstV2I GAAGAC 2 cut(s) 684, 936
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
BsuRI GGCC 4 cut(s) 312, 1163, 1445, 1587
BtgI CCRYGG 2 cut(s) 87, 207
BtsCI GGATG 2 cut(s) 295, 538
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 3 cut(s) 522, 643, 1491
Cac8I GCNNGC 4 cut(s) 174, 493, 703, 1290
CaiI CAGNNNCTG 2 cut(s) 69, 521
Cfr13I GGNCC 3 cut(s) 4, 42, 1162
Csp6I GTAC 1 cut(s) 1012
CspCI CAANNNNNGTGG 2 cut(s) 375, 410
CviQI GTAC 1 cut(s) 1012
DdeI CTNAG 9 cut(s) 137, 185, 800, 920, 1021, 1087, 1104, 1250, 1373
DpnI GATC 2 cut(s) 355, 904
DpnII GATC 2 cut(s) 353, 902
DraI TTTAAA 1 cut(s) 1368
EaeI YGGCCR 3 cut(s) 310, 1443, 1585
Eam1104I CTCTTC 2 cut(s) 585, 616
EarI CTCTTC 2 cut(s) 585, 616
Ecl136II GAGCTC 1 cut(s) 1466
Eco130I CCWWGG 2 cut(s) 87, 207
Eco24I GRGCYC 1 cut(s) 1468
Eco47I GGWCC 2 cut(s) 4, 42
Eco53kI GAGCTC 1 cut(s) 1466
Eco88I CYCGRG 2 cut(s) 218, 227
EcoICRI GAGCTC 1 cut(s) 1466
EcoNI CCTNNNNNAGG 1 cut(s) 1055
EcoO109I RGGNCCY 1 cut(s) 42
EcoRI GAATTC 1 cut(s) 1489
EcoT14I CCWWGG 2 cut(s) 87, 207
EcoT22I ATGCAT 1 cut(s) 1122
EcoT38I GRGCYC 1 cut(s) 1468
ErhI CCWWGG 2 cut(s) 87, 207
Esp3I CGTCTC 1 cut(s) 243
FblI GTMKAC 1 cut(s) 1047
Fnu4HI GCNGC 8 cut(s) 339, 522, 986, 1286, 1443, 1588, 1591, 1620
FokI GGATG 2 cut(s) 302, 545
FriOI GRGCYC 1 cut(s) 1468
Fsp4HI GCNGC 8 cut(s) 339, 522, 986, 1286, 1443, 1588, 1591, 1620
FspBI CTAG 4 cut(s) 651, 1043, 1052, 1671
GluI GCNGC 8 cut(s) 339, 522, 986, 1286, 1443, 1588, 1591, 1620
GsuI CTGGAG 2 cut(s) 217, 423
HaeIII GGCC 4 cut(s) 312, 1163, 1445, 1587
HapII CCGG 2 cut(s) 859, 940
HincII GTYRAC 1 cut(s) 826
HindII GTYRAC 1 cut(s) 826
HindIII AAGCTT 3 cut(s) 1170, 1555, 1682
HinfI GANTC 8 cut(s) 398, 405, 462, 862, 922, 1237, 1390, 1504
HpaI GTTAAC 1 cut(s) 826
HpaII CCGG 2 cut(s) 859, 940
HphI GGTGA 2 cut(s) 553, 1103
Hpy166II GTNNAC 3 cut(s) 826, 878, 1048
Hpy188I TCNGA 6 cut(s) 138, 851, 949, 1079, 1251, 1480
Hpy8I GTNNAC 3 cut(s) 826, 878, 1048
Hpy99I CGWCG 1 cut(s) 470
HpyAV CCTTC 4 cut(s) 611, 849, 882, 1203
HpyCH4III ACNGT 2 cut(s) 237, 638
HpyCH4IV ACGT 4 cut(s) 48, 506, 1074, 1652
HpyCH4V TGCA 8 cut(s) 148, 258, 338, 563, 777, 1120, 1128, 1458
HpyF10VI GCNNNNNNNGC 3 cut(s) 389, 521, 1169
HpyF3I CTNAG 9 cut(s) 137, 185, 800, 920, 1021, 1087, 1104, 1250, 1373
HpySE526I ACGT 4 cut(s) 48, 506, 1074, 1652
Kpn2I TCCGGA 1 cut(s) 858
KspAI GTTAAC 1 cut(s) 826
Kzo9I GATC 2 cut(s) 353, 902
LmnI GCTCC 3 cut(s) 418, 796, 1325
Lsp1109I GCAGC 6 cut(s) 350, 508, 972, 1297, 1577, 1606
LweI GCATC 4 cut(s) 855, 1429, 1685, 1686
MaeI CTAG 4 cut(s) 651, 1043, 1052, 1671
MaeII ACGT 4 cut(s) 48, 506, 1074, 1652
MaeIII GTNAC 6 cut(s) 231, 482, 638, 720, 929, 1415
MalI GATC 2 cut(s) 355, 904
MboI GATC 2 cut(s) 353, 902
MboII GAAGA 9 cut(s) 286, 379, 447, 602, 633, 689, 936, 1295, 1701
MfeI CAATTG 1 cut(s) 736
MflI RGATCY 1 cut(s) 353
MhlI GDGCHC 1 cut(s) 1468
MlsI TGGCCA 1 cut(s) 312
MluCI AATT 3 cut(s) 736, 1489, 1709
MluNI TGGCCA 1 cut(s) 312
MlyI GAGTC 5 cut(s) 407, 414, 471, 931, 1513
MmeI TCCRAC 1 cut(s) 1458
Mox20I TGGCCA 1 cut(s) 312
Mph1103I ATGCAT 1 cut(s) 1122
MroI TCCGGA 1 cut(s) 858
MscI TGGCCA 1 cut(s) 312
MseI TTAA 9 cut(s) 825, 993, 1062, 1071, 1115, 1281, 1332, 1367, 1718
Msp20I TGGCCA 1 cut(s) 312
MspA1I CMGCKG 1 cut(s) 1590
MspI CCGG 2 cut(s) 859, 940
MspR9I CCNGG 1 cut(s) 940
MunI CAATTG 1 cut(s) 736
MwoI GCNNNNNNNGC 3 cut(s) 389, 521, 1169
NciI CCSGG 1 cut(s) 940
NcoI CCATGG 2 cut(s) 87, 207
NdeII GATC 2 cut(s) 353, 902
NlaIV GGNNCC 3 cut(s) 44, 61, 1482
NmeAIII GCCGAG 1 cut(s) 715
NmuCI GTSAC 3 cut(s) 482, 638, 720
NsiI ATGCAT 1 cut(s) 1122
NspI RCATGY 2 cut(s) 573, 896
PciI ACATGT 1 cut(s) 569
PfeI GAWTC 3 cut(s) 862, 1237, 1390
PflFI GACNNNGTC 1 cut(s) 1516
PkrI GCNGC 8 cut(s) 340, 523, 987, 1287, 1444, 1589, 1592, 1621
PleI GAGTC 5 cut(s) 406, 413, 470, 930, 1512
PpsI GAGTC 5 cut(s) 406, 413, 470, 930, 1512
Ppu21I YACGTR 1 cut(s) 1653
PpuMI RGGWCCY 1 cut(s) 42
PscI ACATGT 1 cut(s) 569
Psp124BI GAGCTC 1 cut(s) 1468
Psp1406I AACGTT 1 cut(s) 506
Psp5II RGGWCCY 1 cut(s) 42
PspN4I GGNNCC 3 cut(s) 44, 61, 1482
PspPI GGNCC 3 cut(s) 4, 42, 1162
PspPPI RGGWCCY 1 cut(s) 42
PstNI CAGNNNCTG 2 cut(s) 69, 521
PsuI RGATCY 1 cut(s) 353
PsyI GACNNNGTC 1 cut(s) 1516
RsaI GTAC 1 cut(s) 1013
RsaNI GTAC 1 cut(s) 1012
SacI GAGCTC 1 cut(s) 1468
SaqAI TTAA 9 cut(s) 825, 993, 1062, 1071, 1115, 1281, 1332, 1367, 1718
SatI GCNGC 8 cut(s) 339, 522, 986, 1286, 1443, 1588, 1591, 1620
Sau3AI GATC 2 cut(s) 353, 902
Sau96I GGNCC 3 cut(s) 4, 42, 1162
SchI GAGTC 5 cut(s) 407, 414, 471, 931, 1513
ScrFI CCNGG 1 cut(s) 940
SduI GDGCHC 1 cut(s) 1468
SfaNI GCATC 4 cut(s) 855, 1429, 1685, 1686
SinI GGWCC 2 cut(s) 4, 42
SmlI CTYRAG 4 cut(s) 284, 422, 791, 1700
SmoI CTYRAG 4 cut(s) 284, 422, 791, 1700
Sse9I AATT 3 cut(s) 736, 1489, 1709
SsiI CCGC 2 cut(s) 1442, 1588
SspMI CTAG 4 cut(s) 651, 1043, 1052, 1671
SstI GAGCTC 1 cut(s) 1468
StyD4I CCNGG 1 cut(s) 938
StyI CCWWGG 2 cut(s) 87, 207
TaaI ACNGT 2 cut(s) 237, 638
TaiI ACGT 4 cut(s) 51, 509, 1077, 1655
TaqI TCGA 2 cut(s) 453, 905
TaqII GACCGA 1 cut(s) 696
TasI AATT 3 cut(s) 736, 1489, 1709
TauI GCSGC 2 cut(s) 1445, 1590
TfiI GAWTC 3 cut(s) 862, 1237, 1390
Tru1I TTAA 9 cut(s) 825, 993, 1062, 1071, 1115, 1281, 1332, 1367, 1718
Tru9I TTAA 9 cut(s) 825, 993, 1062, 1071, 1115, 1281, 1332, 1367, 1718
TscAI CASTG 3 cut(s) 522, 643, 1491
TseFI GTSAC 3 cut(s) 482, 638, 720
TseI GCWGC 6 cut(s) 338, 521, 985, 1285, 1590, 1619
Tsp45I GTSAC 3 cut(s) 482, 638, 720
TspDTI ATGAA 9 cut(s) 181, 287, 380, 603, 716, 1295, 1403, 1720, 1766
TspRI CASTG 3 cut(s) 522, 643, 1491
Tth111I GACNNNGTC 1 cut(s) 1516
VpaK11BI GGWCC 2 cut(s) 4, 42
XagI CCTNNNNNAGG 1 cut(s) 1055
XapI RAATTY 2 cut(s) 1489, 1709
XceI RCATGY 2 cut(s) 573, 896
XmiI GTMKAC 1 cut(s) 1047
XspI CTAG 4 cut(s) 651, 1043, 1052, 1671
Zsp2I ATGCAT 1 cut(s) 1122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.