Rroxscaffold_7G00159600

ARM-repeat Tetratricopeptide repeat (TPR)-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0014532
Physical Location & Seq
Reverse (-)
2746688 .. 2749086
2399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00159600.1

Sequence Viewer

Length: 1290 bp
ATGGACTTCATGAGGAAAAAAGAGAAGGAACATGGTGGTTGCACCACTCAGTTTTGTTTCTTCTGCGCAATGAAAGAACCAGATTCCTTCAAGAGGAGAGCCACTCTAGCAACCTGTTTCAAGCAAATGCCTCTCAGAGACGATCAAGAAAACGTTCTGGTGCTGAGCAGCCTATGGCACATTGCTATGACTCACCCTGACGACCAAGAGTTCCCAAACCTCGGCATCTTTGAGTGCATGGCAAGACTAATCCACAAAGGCATCCAAGATCAGAGTAGTCGTTGGCTCCAAAAACACCAGAACATATACATCCCTTACTACGCAGCTCATGTCATCGGTTCTTACACCATGAACCGAGTCGAGTTTGCAAAAATAGCTGCCGAGTCGGGAGTGATTCCGCCGCTGCTCGAGCTTCTGAGAGGGAAGATGAGTTGGGTCGAGCAGCGGGTGGCTGTTCGAGCCCTCGGGCACCTCGCGAGCTATGAGAAGACTTTCAAGCTCGTTGCGGATTACGAAGAGGAGATGGTGAGGTTAGCCATGGAACTAGCTTCTACATGTGTTAATGTGGTGTATGCTAGCTTTGTGGGAGTGAAGGATAAGAGCAAAAGACTAAAATACCACTGTGATTTGGTAACAAGAGGTATTGGAGGTTTAGAGATGGAGAACTCCAAGGCTGAGGAATGGGCTAGTCAACTCCAGTGCTGGTCTCTATACATCTTAAATTGCTTTGCTTGCAAACAAAGGCCTCTGGCTTTGAAACTTATTTGCAAGCAAGAGTTTTTGAGAGAGTTGTGTGGGATGTGGGGTGGGTTATTGGCTAACCACGCTTCTCCGGCTGGGATTGGACTCATTAGAATTTTGTGTTATAGTAAATACGGGAGGAGAAAAGTAGCTGAATCGAAAGAGGTCATAGAGCGCCTGTGTAATTTGTCAAGGTCTTCAGATGATTGGCAGTATATGGGAATTGATTGCCTTTTGCTTCTTCTCAAAGACGCAGATACAAGGTACAACGTTATTGATATTTCTGCTTTGTTTCTCATTGATTTGGTTGAACTCAGAAGCCTTGGAGATCATAGATCAAACTTAGGGGAAACAATCGCAAAAACACTTCTTCTCGATTACAAGCAGAGAAAATCAAACAAGAACGAAACTTTAGAAGAGCTATGGAGTTTAATAGAGAGGAGTAAGAAAGAAAGAGTCTTGTTGTCCGGAGAAATATGGGAAGAAAGAAGGGTTTTGGTGGATTTGATAAAACAAGAAGCAAATCATCTGTTTTGTAAAGGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

429

Amino Acids

49.45

Weight (kDa)

8.48

Isoelectric Point (pI)

50.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_7 PF26524 14 - 257 2.4e-127 Plant ARM repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014532)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43120 AT5G43120
fragaria_vesca FvH4_2g33380
malus_domestica MD08G1088700.v1.1 MD15G1073700.v1.1
prunus_persica Prupe.1G426500_v2.0.a1
pyrus_communis pycom08g07210
rosa_chinensis RchiOBHm_Chr6g0309161
rosa_laevigata RLG00000010585
rosa_multiflora Rmu_sc0020102.1_g000005
rosa_roxburghii Rroxscaffold_7G00159600
rosa_rugosa Rorug06G0370100
rosa_samantha Rh6AG483000 Rh6BG492100 Rh6CG496800 Rh6DG483700
rosa_wichuraiana Rw6G042060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 67
AccB1I GGYRCC 1 cut(s) 468
AccII CGCG 1 cut(s) 476
AccIII TCCGGA 1 cut(s) 1208
AciI CCGC 4 cut(s) 398, 401, 445, 506
AclI AACGTT 2 cut(s) 153, 1011
AcsI RAATTY 1 cut(s) 855
AcuI CTGAAG 1 cut(s) 924
AfaI GTAC 1 cut(s) 1007
AfiI CCNNNNNNNGG 2 cut(s) 93, 221
AflIII ACRYGT 1 cut(s) 554
AgsI TTSAA 5 cut(s) 91, 121, 496, 757, 1052
AluBI AGCT 9 cut(s) 326, 377, 412, 480, 499, 548, 579, 893, 1162
AluI AGCT 9 cut(s) 326, 377, 412, 480, 499, 548, 579, 893, 1162
Alw26I GTCTC 2 cut(s) 132, 711
Ama87I CYCGRG 2 cut(s) 407, 464
Aor13HI TCCGGA 1 cut(s) 1208
AoxI GGCC 1 cut(s) 743
ApeKI GCWGC 5 cut(s) 168, 323, 377, 403, 442
ApoI RAATTY 1 cut(s) 855
Asp700I GAANNNNTTC 2 cut(s) 153, 491
AspLEI GCGC 2 cut(s) 68, 918
AsuHPI GGTGA 2 cut(s) 185, 538
AsuNHI GCTAGC 1 cut(s) 575
AvaI CYCGRG 2 cut(s) 407, 464
BaeGI GKGCMC 1 cut(s) 471
BanI GGYRCC 1 cut(s) 468
BanII GRGCYC 1 cut(s) 463
BbsI GAAGAC 2 cut(s) 494, 930
BbvCI CCTCAGC 1 cut(s) 675
BbvI GCAGC 5 cut(s) 180, 335, 364, 390, 454
BccI CCATC 2 cut(s) 517, 652
BcoDI GTCTC 2 cut(s) 132, 711
BfaI CTAG 4 cut(s) 107, 545, 576, 687
BfoI RGCGCY 1 cut(s) 919
BisI GCNGC 6 cut(s) 169, 324, 378, 401, 404, 443
BlpI GCTNAGC 1 cut(s) 164
BlsI GCNGC 6 cut(s) 170, 325, 379, 402, 405, 444
BmeT110I CYCGRG 2 cut(s) 407, 464
BmiI GGNNCC 2 cut(s) 287, 470
BmsI GCATC 2 cut(s) 234, 270
BmtI GCTAGC 1 cut(s) 579
BpiI GAAGAC 2 cut(s) 494, 930
BplI GAGNNNNNCTC 2 cut(s) 88, 120
BpmI CTGGAG 1 cut(s) 680
Bpu10I CCTNAGC 1 cut(s) 675
Bpu1102I GCTNAGC 1 cut(s) 164
BsaI GGTCTC 1 cut(s) 711
BsaJI CCNNGG 5 cut(s) 220, 463, 537, 669, 1063
BsaWI WCCGGW 1 cut(s) 1208
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 221
Bse1I ACTGG 1 cut(s) 697
Bse3DI GCAATG 2 cut(s) 75, 180
BseAI TCCGGA 1 cut(s) 1208
BseDI CCNNGG 5 cut(s) 220, 463, 537, 669, 1063
BseGI GGATG 3 cut(s) 261, 309, 804
BseLI CCNNNNNNNGG 2 cut(s) 93, 221
BseMI GCAATG 2 cut(s) 75, 180
BseMII CTCAG 6 cut(s) 62, 148, 155, 407, 666, 1069
BseNI ACTGG 1 cut(s) 697
BseRI GAGGAG 4 cut(s) 109, 533, 895, 1195
BseSI GKGCMC 1 cut(s) 471
BseXI GCAGC 5 cut(s) 180, 335, 364, 390, 454
BseYI CCCAGC 1 cut(s) 836
Bsh1236I CGCG 1 cut(s) 476
BshFI GGCC 1 cut(s) 745
BshNI GGYRCC 1 cut(s) 468
BsiHKCI CYCGRG 2 cut(s) 407, 464
BsiSI CCGG 2 cut(s) 833, 1209
BslI CCNNNNNNNGG 2 cut(s) 93, 221
BsmAI GTCTC 2 cut(s) 132, 711
BsmBI CGTCTC 1 cut(s) 132
BsnI GGCC 1 cut(s) 745
Bso31I GGTCTC 1 cut(s) 711
BsoBI CYCGRG 2 cut(s) 407, 464
Bsp1286I GDGCHC 2 cut(s) 463, 471
Bsp13I TCCGGA 1 cut(s) 1208
Bsp143I GATC 4 cut(s) 142, 268, 1069, 1076
Bsp1720I GCTNAGC 1 cut(s) 164
Bsp19I CCATGG 1 cut(s) 537
Bsp68I TCGCGA 1 cut(s) 476
BspACI CCGC 4 cut(s) 398, 401, 445, 506
BspANI GGCC 1 cut(s) 745
BspCNI CTCAG 6 cut(s) 61, 147, 156, 408, 667, 1068
BspEI TCCGGA 1 cut(s) 1208
BspFNI CGCG 1 cut(s) 476
BspHI TCATGA 1 cut(s) 9
BspLI GGNNCC 2 cut(s) 287, 470
BspOI GCTAGC 1 cut(s) 579
BspQI GCTCTTC 1 cut(s) 1152
BspT107I GGYRCC 1 cut(s) 468
BspTNI GGTCTC 1 cut(s) 711
BsrDI GCAATG 2 cut(s) 75, 180
BsrI ACTGG 1 cut(s) 697
BssECI CCNNGG 5 cut(s) 220, 463, 537, 669, 1063
BssMI GATC 4 cut(s) 142, 268, 1069, 1076
BssT1I CCWWGG 3 cut(s) 537, 669, 1063
Bst4CI ACNGT 1 cut(s) 623
Bst6I CTCTTC 2 cut(s) 510, 1152
BstC8I GCNNGC 4 cut(s) 478, 577, 733, 770
BstDEI CTNAG 7 cut(s) 48, 134, 164, 416, 675, 1055, 1084
BstDSI CCRYGG 1 cut(s) 537
BstENI CCTNNNNNAGG 1 cut(s) 91
BstF5I GGATG 3 cut(s) 261, 309, 804
BstFNI CGCG 1 cut(s) 476
BstH2I RGCGCY 1 cut(s) 919
BstHHI GCGC 2 cut(s) 68, 918
BstKTI GATC 4 cut(s) 145, 271, 1072, 1079
BstMAI GTCTC 2 cut(s) 132, 711
BstMBI GATC 4 cut(s) 142, 268, 1069, 1076
BstMWI GCNNNNNNNGC 7 cut(s) 107, 374, 409, 458, 732, 824, 833
BstNSI RCATGY 1 cut(s) 558
BstSLI GKGCMC 1 cut(s) 471
BstUI CGCG 1 cut(s) 476
BstV1I GCAGC 5 cut(s) 180, 335, 364, 390, 454
BstV2I GAAGAC 2 cut(s) 494, 930
BsuRI GGCC 1 cut(s) 745
BtgI CCRYGG 1 cut(s) 537
BtsCI GGATG 3 cut(s) 261, 309, 804
BtsIMutI CAGTG 2 cut(s) 619, 704
BtuMI TCGCGA 1 cut(s) 476
Cac8I GCNNGC 4 cut(s) 478, 577, 733, 770
CciI TCATGA 1 cut(s) 9
CfoI GCGC 2 cut(s) 68, 918
CseI GACGC 1 cut(s) 1001
Csp6I GTAC 1 cut(s) 1006
CviAII CATG 7 cut(s) 10, 32, 238, 329, 349, 538, 555
CviQI GTAC 1 cut(s) 1006
DdeI CTNAG 7 cut(s) 48, 134, 164, 416, 675, 1055, 1084
DpnI GATC 4 cut(s) 144, 270, 1071, 1078
DpnII GATC 4 cut(s) 142, 268, 1069, 1076
Eam1104I CTCTTC 2 cut(s) 510, 1152
EarI CTCTTC 2 cut(s) 510, 1152
EciI GGCGGA 1 cut(s) 387
Eco130I CCWWGG 3 cut(s) 537, 669, 1063
Eco147I AGGCCT 1 cut(s) 745
Eco24I GRGCYC 1 cut(s) 463
Eco31I GGTCTC 1 cut(s) 711
Eco57I CTGAAG 1 cut(s) 924
Eco88I CYCGRG 2 cut(s) 407, 464
EcoNI CCTNNNNNAGG 1 cut(s) 91
EcoT14I CCWWGG 3 cut(s) 537, 669, 1063
EcoT38I GRGCYC 1 cut(s) 463
ErhI CCWWGG 3 cut(s) 537, 669, 1063
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 7 cut(s) 13, 35, 241, 332, 352, 541, 558
FatI CATG 7 cut(s) 9, 31, 237, 328, 348, 537, 554
FauI CCCGC 1 cut(s) 438
Fnu4HI GCNGC 6 cut(s) 169, 324, 378, 401, 404, 443
FokI GGATG 3 cut(s) 248, 296, 811
FriOI GRGCYC 1 cut(s) 463
Fsp4HI GCNGC 6 cut(s) 169, 324, 378, 401, 404, 443
FspBI CTAG 4 cut(s) 107, 545, 576, 687
FspI TGCGCA 1 cut(s) 67
GlaI GCGC 2 cut(s) 67, 917
GluI GCNGC 6 cut(s) 169, 324, 378, 401, 404, 443
GsaI CCCAGC 1 cut(s) 840
GsuI CTGGAG 1 cut(s) 680
HaeII RGCGCY 1 cut(s) 919
HaeIII GGCC 1 cut(s) 745
HapII CCGG 2 cut(s) 833, 1209
HgaI GACGC 1 cut(s) 1001
HhaI GCGC 2 cut(s) 68, 918
Hin1II CATG 7 cut(s) 13, 35, 241, 332, 352, 541, 558
Hin6I GCGC 2 cut(s) 66, 916
HinP1I GCGC 2 cut(s) 66, 916
HincII GTYRAC 1 cut(s) 692
HindII GTYRAC 1 cut(s) 692
HinfI GANTC 8 cut(s) 83, 190, 357, 383, 394, 846, 896, 1197
HpaII CCGG 2 cut(s) 833, 1209
HphI GGTGA 2 cut(s) 185, 538
Hpy166II GTNNAC 1 cut(s) 692
Hpy188I TCNGA 5 cut(s) 137, 273, 417, 943, 1058
Hpy188III TCNNGA 7 cut(s) 10, 91, 146, 387, 475, 1115, 1209
Hpy8I GTNNAC 1 cut(s) 692
HpyAV CCTTC 4 cut(s) 19, 97, 586, 1224
HpyCH4III ACNGT 1 cut(s) 623
HpyCH4IV ACGT 2 cut(s) 153, 1011
HpyCH4V TGCA 5 cut(s) 42, 237, 368, 735, 768
HpyF10VI GCNNNNNNNGC 7 cut(s) 107, 374, 409, 458, 732, 824, 833
HpyF3I CTNAG 7 cut(s) 48, 134, 164, 416, 675, 1055, 1084
HpySE526I ACGT 2 cut(s) 153, 1011
Hsp92II CATG 7 cut(s) 13, 35, 241, 332, 352, 541, 558
HspAI GCGC 2 cut(s) 66, 916
Kpn2I TCCGGA 1 cut(s) 1208
Kzo9I GATC 4 cut(s) 142, 268, 1069, 1076
LguI GCTCTTC 1 cut(s) 1152
LmnI GCTCC 1 cut(s) 291
Lsp1109I GCAGC 5 cut(s) 180, 335, 364, 390, 454
LweI GCATC 2 cut(s) 234, 270
MaeI CTAG 4 cut(s) 107, 545, 576, 687
MaeII ACGT 2 cut(s) 153, 1011
MaeIII GTNAC 1 cut(s) 631
MalI GATC 4 cut(s) 144, 270, 1071, 1078
MboI GATC 4 cut(s) 142, 268, 1069, 1076
MboII GAAGA 9 cut(s) 52, 436, 499, 527, 930, 974, 1103, 1169, 1235
MhlI GDGCHC 2 cut(s) 463, 471
MluCI AATT 4 cut(s) 721, 855, 925, 963
MlyI GAGTC 5 cut(s) 184, 366, 392, 840, 1206
MroI TCCGGA 1 cut(s) 1208
MroXI GAANNNNTTC 2 cut(s) 153, 491
MseI TTAA 3 cut(s) 561, 719, 1172
MslI CAYNNNNRTG 1 cut(s) 185
MspA1I CMGCKG 2 cut(s) 403, 445
MspI CCGG 2 cut(s) 833, 1209
MvnI CGCG 1 cut(s) 476
MwoI GCNNNNNNNGC 7 cut(s) 107, 374, 409, 458, 732, 824, 833
NcoI CCATGG 1 cut(s) 537
NdeII GATC 4 cut(s) 142, 268, 1069, 1076
NheI GCTAGC 1 cut(s) 575
NlaIII CATG 7 cut(s) 13, 35, 241, 332, 352, 541, 558
NlaIV GGNNCC 2 cut(s) 287, 470
NmeAIII GCCGAG 2 cut(s) 201, 406
NruI TCGCGA 1 cut(s) 476
NsbI TGCGCA 1 cut(s) 67
NspI RCATGY 1 cut(s) 558
PaeR7I CTCGAG 1 cut(s) 407
PagI TCATGA 1 cut(s) 9
PceI AGGCCT 1 cut(s) 745
PciI ACATGT 1 cut(s) 554
PciSI GCTCTTC 1 cut(s) 1152
PdmI GAANNNNTTC 2 cut(s) 153, 491
PfeI GAWTC 3 cut(s) 83, 394, 896
PkrI GCNGC 6 cut(s) 170, 325, 379, 402, 405, 444
PleI GAGTC 5 cut(s) 184, 365, 391, 840, 1205
PpsI GAGTC 5 cut(s) 184, 365, 391, 840, 1205
PscI ACATGT 1 cut(s) 554
Psp1406I AACGTT 2 cut(s) 153, 1011
PspFI CCCAGC 1 cut(s) 836
PspN4I GGNNCC 2 cut(s) 287, 470
PspXI VCTCGAGB 1 cut(s) 407
RruI TCGCGA 1 cut(s) 476
RsaI GTAC 1 cut(s) 1007
RsaNI GTAC 1 cut(s) 1006
RseI CAYNNNNRTG 1 cut(s) 185
SapI GCTCTTC 1 cut(s) 1152
SaqAI TTAA 3 cut(s) 561, 719, 1172
SatI GCNGC 6 cut(s) 169, 324, 378, 401, 404, 443
Sau3AI GATC 4 cut(s) 142, 268, 1069, 1076
SchI GAGTC 5 cut(s) 184, 366, 392, 840, 1206
SduI GDGCHC 2 cut(s) 463, 471
SfaNI GCATC 2 cut(s) 234, 270
Sfr274I CTCGAG 1 cut(s) 407
SlaI CTCGAG 1 cut(s) 407
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 4 cut(s) 721, 855, 925, 963
SseBI AGGCCT 1 cut(s) 745
SsiI CCGC 4 cut(s) 398, 401, 445, 506
SspMI CTAG 4 cut(s) 107, 545, 576, 687
StuI AGGCCT 1 cut(s) 745
StyI CCWWGG 3 cut(s) 537, 669, 1063
TaaI ACNGT 1 cut(s) 623
TaiI ACGT 2 cut(s) 156, 1014
TaqI TCGA 6 cut(s) 360, 408, 438, 457, 899, 1116
TasI AATT 4 cut(s) 721, 855, 925, 963
TauI GCSGC 1 cut(s) 403
TfiI GAWTC 3 cut(s) 83, 394, 896
Tru1I TTAA 3 cut(s) 561, 719, 1172
Tru9I TTAA 3 cut(s) 561, 719, 1172
TscAI CASTG 2 cut(s) 626, 704
TseI GCWGC 5 cut(s) 168, 323, 377, 403, 442
TspDTI ATGAA 2 cut(s) 86, 365
TspRI CASTG 2 cut(s) 626, 704
XagI CCTNNNNNAGG 1 cut(s) 91
XapI RAATTY 1 cut(s) 855
XceI RCATGY 1 cut(s) 558
XhoI CTCGAG 1 cut(s) 407
XmnI GAANNNNTTC 2 cut(s) 153, 491
XspI CTAG 4 cut(s) 107, 545, 576, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.