AT5G45740

Ubiquitin-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014274
Physical Location & Seq
Reverse (-)
18556539 .. 18558406
1868 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G45740.1

Sequence Viewer

Length: 357 bp
ATGGGTTGTATCGGATCTTCTCAGGCCAGAAATGAAGGCGGAGCAAAAAGGAAGAAAATCATGAAACCTAAACCGTGGGCACATACTGAGCCAATCACAAGGGCACAACTTACGAACATGCGTGAGGAATTTTGGGACACCTCTCCACACTATGGTGGTCAAAGAGAGATATGGGAAGCACTTCGAGCTGCTGCTGAAGCTGACTTGAAACTAGCACAAACTATTGTTGACAGTGCAGGCGTGATTGTTCAGAACCGTGACCTAACATTGTGCTGGGATGAAAGAGGTGCTAGATATGAGCTTCCTAGGTACGTTCTAAGTGAGCCCACGAATCTGATTCGAGAGGAAGGACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBD

Protein Analysis

118

Amino Acids

13.41

Weight (kDa)

6.74

Isoelectric Point (pI)

27.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBD PF16455 17 - 115 1.7e-36 Ubiquitin-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014274)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16960 AT1G53400 AT5G45740
fragaria_vesca FvH4_3g18130
malus_domestica MD11G1265800.v1.1
prunus_persica Prupe.4G160100_v2.0.a1
pyrus_communis pycom03g19390 pycom11g23370
rosa_chinensis RchiOBHm_Chr5g0030541
rosa_laevigata RLG00000033224
rosa_multiflora Rmu_sc0013101.1_g000004
rosa_roxburghii Rroxscaffold_1G00049770
rosa_rugosa Rorug05G0118300
rosa_samantha Rh5BG209700 Rh5CG233100 Rh5DG214200
rosa_wichuraiana Rw5G019240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 152
AciI CCGC 1 cut(s) 39
AclWI GGATC 1 cut(s) 22
AcsI RAATTY 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 216
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 1 cut(s) 152
AgsI TTSAA 1 cut(s) 208
AleI CACNNNNGTG 1 cut(s) 153
AluBI AGCT 3 cut(s) 188, 200, 301
AluI AGCT 3 cut(s) 188, 200, 301
AlwI GGATC 1 cut(s) 22
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 2 cut(s) 188, 191
ApoI RAATTY 1 cut(s) 128
Asp700I GAANNNNTTC 1 cut(s) 180
AspA2I CCTAGG 1 cut(s) 305
AvrII CCTAGG 1 cut(s) 305
BaeGI GKGCMC 2 cut(s) 82, 106
BanII GRGCYC 1 cut(s) 327
BarI GAAGNNNNNNTAC 1 cut(s) 33
BbvI GCAGC 2 cut(s) 175, 178
BfaI CTAG 3 cut(s) 212, 291, 306
BisI GCNGC 2 cut(s) 189, 192
BlnI CCTAGG 1 cut(s) 305
BlsI GCNGC 2 cut(s) 190, 193
BsaJI CCNNGG 2 cut(s) 74, 305
Bsc4I CCNNNNNNNGG 1 cut(s) 152
BseDI CCNNGG 2 cut(s) 74, 305
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMII CTCAG 2 cut(s) 35, 78
BseSI GKGCMC 2 cut(s) 82, 106
BseXI GCAGC 2 cut(s) 175, 178
BseYI CCCAGC 1 cut(s) 273
BsgI GTGCAG 1 cut(s) 255
BshFI GGCC 1 cut(s) 26
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 149
BsnI GGCC 1 cut(s) 26
Bsp1286I GDGCHC 3 cut(s) 82, 106, 327
Bsp143I GATC 1 cut(s) 14
BspACI CCGC 1 cut(s) 39
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 2 cut(s) 34, 79
BspHI TCATGA 1 cut(s) 60
BspPI GGATC 1 cut(s) 22
BssECI CCNNGG 2 cut(s) 74, 305
BssMI GATC 1 cut(s) 14
BssT1I CCWWGG 1 cut(s) 305
Bst4CI ACNGT 4 cut(s) 75, 233, 257, 354
BstC8I GCNNGC 1 cut(s) 238
BstDEI CTNAG 3 cut(s) 21, 87, 317
BstDSI CCRYGG 1 cut(s) 74
BstF5I GGATG 1 cut(s) 283
BstKTI GATC 1 cut(s) 17
BstMBI GATC 1 cut(s) 14
BstMWI GCNNNNNNNGC 2 cut(s) 185, 197
BstNSI RCATGY 1 cut(s) 121
BstSLI GKGCMC 2 cut(s) 82, 106
BstV1I GCAGC 2 cut(s) 175, 178
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BsuRI GGCC 1 cut(s) 26
BtgI CCRYGG 1 cut(s) 74
BtsCI GGATG 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 238
CciI TCATGA 1 cut(s) 60
Csp6I GTAC 1 cut(s) 310
CviAII CATG 2 cut(s) 61, 118
CviJI RGCY 6 cut(s) 26, 91, 188, 200, 301, 325
CviKI_1 RGCY 6 cut(s) 26, 91, 188, 200, 301, 325
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 3 cut(s) 21, 87, 317
DpnI GATC 1 cut(s) 16
DpnII GATC 1 cut(s) 14
EciI GGCGGA 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 305
Eco24I GRGCYC 1 cut(s) 327
Eco57I CTGAAG 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 305
EcoT38I GRGCYC 1 cut(s) 327
ErhI CCWWGG 1 cut(s) 305
FaeI CATG 2 cut(s) 64, 121
FaiI YATR 6 cut(s) 62, 84, 119, 153, 172, 297
FaqI GGGAC 1 cut(s) 149
FatI CATG 2 cut(s) 60, 117
Fnu4HI GCNGC 2 cut(s) 189, 192
FokI GGATG 1 cut(s) 290
FriOI GRGCYC 1 cut(s) 327
Fsp4HI GCNGC 2 cut(s) 189, 192
FspBI CTAG 3 cut(s) 212, 291, 306
GluI GCNGC 2 cut(s) 189, 192
GsaI CCCAGC 1 cut(s) 277
HaeIII GGCC 1 cut(s) 26
Hin1II CATG 2 cut(s) 64, 121
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 2 cut(s) 331, 337
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 3 cut(s) 14, 252, 336
Hpy188III TCNNGA 2 cut(s) 61, 341
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 2 cut(s) 29, 341
HpyCH4III ACNGT 4 cut(s) 75, 233, 257, 354
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 197
HpyF3I CTNAG 3 cut(s) 21, 87, 317
HpySE526I ACGT 1 cut(s) 312
Hsp92II CATG 2 cut(s) 64, 121
Kzo9I GATC 1 cut(s) 14
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 4 cut(s) 8, 40, 222, 259
Lsp1109I GCAGC 2 cut(s) 175, 178
MaeI CTAG 3 cut(s) 212, 291, 306
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 1 cut(s) 257
MalI GATC 1 cut(s) 16
MboI GATC 1 cut(s) 14
MboII GAAGA 2 cut(s) 9, 64
MflI RGATCY 1 cut(s) 14
MhlI GDGCHC 3 cut(s) 82, 106, 327
MluCI AATT 1 cut(s) 128
MnlI CCTC 4 cut(s) 118, 151, 278, 337
MroXI GAANNNNTTC 1 cut(s) 180
MslI CAYNNNNRTG 1 cut(s) 153
MwoI GCNNNNNNNGC 2 cut(s) 185, 197
NdeII GATC 1 cut(s) 14
NlaIII CATG 2 cut(s) 64, 121
NmuCI GTSAC 1 cut(s) 257
NspI RCATGY 1 cut(s) 121
OliI CACNNNNGTG 1 cut(s) 153
PagI TCATGA 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 2 cut(s) 331, 337
PflMI CCANNNNNTGG 1 cut(s) 152
PkrI GCNGC 2 cut(s) 190, 193
PspFI CCCAGC 1 cut(s) 273
PsuI RGATCY 1 cut(s) 14
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
RseI CAYNNNNRTG 1 cut(s) 153
SatI GCNGC 2 cut(s) 189, 192
Sau3AI GATC 1 cut(s) 14
SduI GDGCHC 3 cut(s) 82, 106, 327
SetI ASST 9 cut(s) 70, 143, 190, 202, 264, 289, 303, 311, 315
SmiMI CAYNNNNRTG 1 cut(s) 153
Sse9I AATT 1 cut(s) 128
SsiI CCGC 1 cut(s) 39
SspMI CTAG 3 cut(s) 212, 291, 306
StyI CCWWGG 1 cut(s) 305
TaaI ACNGT 4 cut(s) 75, 233, 257, 354
TaiI ACGT 1 cut(s) 315
TaqI TCGA 2 cut(s) 184, 340
TasI AATT 1 cut(s) 128
TfiI GAWTC 2 cut(s) 331, 337
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 2 cut(s) 188, 191
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 3 cut(s) 48, 77, 294
TspRI CASTG 1 cut(s) 238
Van91I CCANNNNNTGG 1 cut(s) 152
XapI RAATTY 1 cut(s) 128
XceI RCATGY 1 cut(s) 121
XmaJI CCTAGG 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 3 cut(s) 212, 291, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.