Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013101.1

Orthogroup ID

OG0014274

Physical Location & Seq

Genomic Coordinates Forward (+)

17826 .. 21052

Gene Structure 3227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013101.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atgggctgcgccggatcgtcgcagagcaaagaagacggagctttgaaaaagattcggaagccaaaaccttggaagcatccccagccaataacaaagactcagctcttgcagctgcgtgaagagttttgggacacggctcctcactatggtggcaggaaagagatttgggatgctcttcgagctgctgctgaggcagatctaagtctagcacaagctattgttgacagtgctggggtcattgttcagagtgctgatttgacaatttgctatgatgaaagaggtgcaaaatacgaactacccaagtatgttttgagtgagccaaccaacttgattcgagagagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBD

Protein Analysis

114

Amino Acids

12.7

Weight (kDa)

6.73

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16960 AT1G53400 AT5G45740
fragaria_vesca	FvH4_3g18130
malus_domestica	MD11G1265800.v1.1
prunus_persica	Prupe.4G160100_v2.0.a1
pyrus_communis	pycom03g19390 pycom11g23370
rosa_chinensis	RchiOBHm_Chr5g0030541
rosa_laevigata	RLG00000033224
rosa_multiflora	Rmu_sc0013101.1_g000004
rosa_roxburghii	Rroxscaffold_1G00049770
rosa_rugosa	Rorug05G0118300
rosa_samantha	Rh5BG209700 Rh5CG233100 Rh5DG214200
rosa_wichuraiana	Rw5G019240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	46
AleI	CACNNNNGTG	1 cut(s)	147
AluBI	AGCT	5 cut(s)	41, 103, 112, 182, 215
AluI	AGCT	5 cut(s)	41, 103, 112, 182, 215
AlwI	GGATC	1 cut(s)	22
ApeKI	GCWGC	5 cut(s)	6, 109, 112, 182, 185
AspLEI	GCGC	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	39
BbvCI	CCTCAGC	1 cut(s)	189
BbvI	GCAGC	4 cut(s)	99, 121, 169, 172
BceAI	ACGGC	1 cut(s)	150
BfaI	CTAG	1 cut(s)	206
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	5 cut(s)	7, 110, 113, 183, 186
BlsI	GCNGC	5 cut(s)	8, 111, 114, 184, 187
BmiI	GGNNCC	1 cut(s)	138
BmsI	GCATC	2 cut(s)	85, 160
BpiI	GAAGAC	1 cut(s)	39
Bpu10I	CCTNAGC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	2 cut(s)	76, 175
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMII	CTCAG	2 cut(s)	113, 180
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	4 cut(s)	99, 121, 169, 172
BseYI	CCCAGC	2 cut(s)	81, 230
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	14, 196
BspCNI	CTCAG	2 cut(s)	112, 181
BspLI	GGNNCC	1 cut(s)	138
BspPI	GGATC	1 cut(s)	22
BspQI	GCTCTTC	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	2 cut(s)	14, 196
BssT1I	CCWWGG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	2 cut(s)	114, 180
BstDEI	CTNAG	3 cut(s)	99, 189, 200
BstF5I	GGATG	2 cut(s)	76, 175
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	2 cut(s)	17, 199
BstMBI	GATC	2 cut(s)	14, 196
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 109, 179, 191
BstV1I	GCAGC	4 cut(s)	99, 121, 169, 172
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	196
BstXI	CCANNNNNNTGG	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	76, 175
BtsIMutI	CAGTG	1 cut(s)	232
CfoI	GCGC	1 cut(s)	11
DdeI	CTNAG	3 cut(s)	99, 189, 200
DpnI	GATC	2 cut(s)	16, 198
DpnII	GATC	2 cut(s)	14, 196
Eam1104I	CTCTTC	2 cut(s)	114, 180
EarI	CTCTTC	2 cut(s)	114, 180
Eco130I	CCWWGG	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	68
FaiI	YATR	3 cut(s)	147, 270, 306
FaqI	GGGAC	1 cut(s)	143
Fnu4HI	GCNGC	5 cut(s)	7, 110, 113, 183, 186
FokI	GGATG	2 cut(s)	63, 182
Fsp4HI	GCNGC	5 cut(s)	7, 110, 113, 183, 186
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	5 cut(s)	7, 110, 113, 183, 186
GsaI	CCCAGC	2 cut(s)	85, 234
HapII	CCGG	1 cut(s)	12
HhaI	GCGC	1 cut(s)	11
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	3 cut(s)	52, 97, 331
HpaII	CCGG	1 cut(s)	12
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	2 cut(s)	57, 246
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4V	TGCA	2 cut(s)	109, 284
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 109, 179, 191
HpyF3I	CTNAG	3 cut(s)	99, 189, 200
HspAI	GCGC	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	14, 196
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	2 cut(s)	38, 142
LpnPI	CCDG	4 cut(s)	25, 95, 139, 216
Lsp1109I	GCAGC	4 cut(s)	99, 121, 169, 172
LweI	GCATC	2 cut(s)	85, 160
MaeI	CTAG	1 cut(s)	206
MalI	GATC	2 cut(s)	16, 198
MboI	GATC	2 cut(s)	14, 196
MboII	GAAGA	3 cut(s)	44, 131, 167
MflI	RGATCY	1 cut(s)	196
MluCI	AATT	1 cut(s)	261
MlyI	GAGTC	1 cut(s)	91
MnlI	CCTC	3 cut(s)	150, 184, 272
MslI	CAYNNNNRTG	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	112
MspI	CCGG	1 cut(s)	12
MwoI	GCNNNNNNNGC	4 cut(s)	82, 109, 179, 191
NdeII	GATC	2 cut(s)	14, 196
NlaIV	GGNNCC	1 cut(s)	138
OliI	CACNNNNGTG	1 cut(s)	147
PciSI	GCTCTTC	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	52, 331
PkrI	GCNGC	5 cut(s)	8, 111, 114, 184, 187
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PspFI	CCCAGC	2 cut(s)	81, 230
PspN4I	GGNNCC	1 cut(s)	138
PsuI	RGATCY	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	147
SapI	GCTCTTC	1 cut(s)	180
SatI	GCNGC	5 cut(s)	7, 110, 113, 183, 186
Sau3AI	GATC	2 cut(s)	14, 196
SchI	GAGTC	1 cut(s)	91
SetI	ASST	7 cut(s)	43, 70, 105, 114, 184, 217, 283
SfaNI	GCATC	2 cut(s)	85, 160
SmiMI	CAYNNNNRTG	1 cut(s)	147
Sse9I	AATT	1 cut(s)	261
SspMI	CTAG	1 cut(s)	206
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	227
TaqI	TCGA	2 cut(s)	178, 334
TasI	AATT	1 cut(s)	261
TfiI	GAWTC	2 cut(s)	52, 331
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	5 cut(s)	6, 109, 112, 182, 185
TspDTI	ATGAA	1 cut(s)	288
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	1 cut(s)	232
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.