Rorug05G0118300

Ubiquitin domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0014274
Physical Location & Seq
Forward (+)
10458855 .. 10460393
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0118300.1

Sequence Viewer

Length: 726 bp
ATGGGGTTTAAGCCAATAGACTGGTATTGTCGACCAGAAGCTAATGGGGTATGGGCCAAAGCAGTCAGTGCTTTTGGCTCATACACTCCCTGTGCAATGGACTCTATGGTCATCTGCATTTCTCATTTAGTTATTTTCAGCCTGTGCTGCTATCGAATATGGATGATCAAGAAGAATTTGAAATCCCGGAGGTTCAGGTTGAGGTCAAATTACTATAACTACTTGTTGGGTTTGTTGGCTGGTTACTCCACTGCTGAGCCTCTACTGAGGTTGGTGATGCGTTTATCACTTTTTAACCCGTCTGGCTTTGCTCCTTTTGAGATGACTTCTTCAATCATTGAAGCTCTTGCTTGGTGCTCTATGCTAATATTGATTGGCTTGGAAACTAAGATATACATTCGGGAATTCCGATGGTACGTAAGGTTTGGAGTCCTTTATGTCTTGGTAGGATATGCCATGGTGCTAAATCTTATTCTTGGAGTGACAGATTCCTACAGTGGATCTGCTCTGTACCTGTATATAAGCACTATCTGTTGCCAGGTGTTGTTTGGAATTCTACTTCTCTTCTATGTTCCCAGTTTGGATCCTTATCCTGGCTACGTTGTTTTGCAATCTGAGTCACTTGACAATGCTGAATATGAAGCACTACCAGGAGAAGATCAAATCTGCCCTGAACGGCATGTTAATATAATTTCCAGTAAGGAGCCTAAAACTTCCCCGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBD

Protein Analysis

241

Amino Acids

27.43

Weight (kDa)

8.01

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014274)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16960 AT1G53400 AT5G45740
fragaria_vesca FvH4_3g18130
malus_domestica MD11G1265800.v1.1
prunus_persica Prupe.4G160100_v2.0.a1
pyrus_communis pycom03g19390 pycom11g23370
rosa_chinensis RchiOBHm_Chr5g0030541
rosa_laevigata RLG00000033224
rosa_multiflora Rmu_sc0013101.1_g000004
rosa_roxburghii Rroxscaffold_1G00049770
rosa_rugosa Rorug05G0118300
rosa_samantha Rh5BG209700 Rh5CG233100 Rh5DG214200
rosa_wichuraiana Rw5G019240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 107
AccI GTMKAC 1 cut(s) 31
AclWI GGATC 3 cut(s) 508, 578, 591
AcsI RAATTY 3 cut(s) 175, 404, 552
AfaI GTAC 2 cut(s) 416, 512
AfiI CCNNNNNNNGG 1 cut(s) 593
AgsI TTSAA 3 cut(s) 181, 333, 341
AjnI CCWGG 3 cut(s) 537, 592, 649
AluBI AGCT 2 cut(s) 41, 344
AluI AGCT 2 cut(s) 41, 344
Alw21I GWGCWC 1 cut(s) 359
AlwI GGATC 3 cut(s) 508, 578, 591
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 1 cut(s) 147
ApoI RAATTY 3 cut(s) 175, 404, 552
AspS9I GGNCC 1 cut(s) 54
AsuC2I CCSGG 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 286
BamHI GGATCC 1 cut(s) 583
Bbv12I GWGCWC 1 cut(s) 359
BbvI GCAGC 1 cut(s) 134
BccI CCATC 1 cut(s) 405
BceAI ACGGC 1 cut(s) 692
BciT130I CCWGG 3 cut(s) 539, 594, 651
BclI TGATCA 1 cut(s) 165
BcnI CCSGG 1 cut(s) 187
BfmI CTRYAG 1 cut(s) 493
BisI GCNGC 1 cut(s) 148
BlpI GCTNAGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 149
Bme1390I CCNGG 4 cut(s) 187, 539, 594, 651
BmgT120I GGNCC 1 cut(s) 54
BmiI GGNNCC 2 cut(s) 585, 705
BmrFI CCNGG 4 cut(s) 187, 539, 594, 651
BmrI ACTGGG 1 cut(s) 570
BmsI GCATC 1 cut(s) 267
BmuI ACTGGG 1 cut(s) 570
Bpu1102I GCTNAGC 1 cut(s) 255
BpuMI CCSGG 1 cut(s) 187
BsaAI YACGTR 1 cut(s) 418
BsaBI GATNNNNATC 1 cut(s) 588
BsaJI CCNNGG 1 cut(s) 456
Bsc4I CCNNNNNNNGG 1 cut(s) 593
Bse1I ACTGG 3 cut(s) 26, 576, 696
Bse3DI GCAATG 1 cut(s) 102
Bse8I GATNNNNATC 1 cut(s) 588
BseBI CCWGG 3 cut(s) 539, 594, 651
BseDI CCNNGG 1 cut(s) 456
BseGI GGATG 1 cut(s) 168
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 1 cut(s) 593
BseMI GCAATG 1 cut(s) 102
BseMII CTCAG 3 cut(s) 246, 257, 606
BseNI ACTGG 3 cut(s) 26, 576, 696
BseXI GCAGC 1 cut(s) 134
BshFI GGCC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 359
BsiSI CCGG 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 593
BsnI GGCC 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 359
Bsp143I GATC 4 cut(s) 165, 500, 583, 658
Bsp1720I GCTNAGC 1 cut(s) 255
Bsp19I CCATGG 1 cut(s) 456
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 3 cut(s) 247, 258, 607
BspLI GGNNCC 2 cut(s) 585, 705
BspPI GGATC 3 cut(s) 508, 578, 591
BsrDI GCAATG 1 cut(s) 102
BsrI ACTGG 3 cut(s) 26, 576, 696
BssECI CCNNGG 1 cut(s) 456
BssMI GATC 4 cut(s) 165, 500, 583, 658
BssT1I CCWWGG 1 cut(s) 456
Bst2UI CCWGG 3 cut(s) 539, 594, 651
Bst4CI ACNGT 1 cut(s) 497
Bst6I CTCTTC 1 cut(s) 569
BstAPI GCANNNNNTGC 1 cut(s) 68
BstBAI YACGTR 1 cut(s) 418
BstDEI CTNAG 4 cut(s) 255, 266, 387, 615
BstDSI CCRYGG 1 cut(s) 456
BstF5I GGATG 1 cut(s) 168
BstKTI GATC 4 cut(s) 168, 503, 586, 661
BstMBI GATC 4 cut(s) 165, 500, 583, 658
BstMWI GCNNNNNNNGC 2 cut(s) 68, 147
BstNI CCWGG 3 cut(s) 539, 594, 651
BstNSI RCATGY 1 cut(s) 683
BstSCI CCNGG 4 cut(s) 185, 537, 592, 649
BstSFI CTRYAG 1 cut(s) 493
BstSNI TACGTA 1 cut(s) 418
BstV1I GCAGC 1 cut(s) 134
BstX2I RGATCY 2 cut(s) 500, 583
BstXI CCANNNNNNTGG 1 cut(s) 21
BstYI RGATCY 2 cut(s) 500, 583
BsuRI GGCC 1 cut(s) 56
BtgI CCRYGG 1 cut(s) 456
BtsCI GGATG 1 cut(s) 168
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 3 cut(s) 73, 249, 502
Cfr13I GGNCC 1 cut(s) 54
Csp6I GTAC 2 cut(s) 415, 511
CviAII CATG 2 cut(s) 457, 680
CviQI GTAC 2 cut(s) 415, 511
DdeI CTNAG 4 cut(s) 255, 266, 387, 615
DpnI GATC 4 cut(s) 167, 502, 585, 660
DpnII GATC 4 cut(s) 165, 500, 583, 658
DrdI GACNNNNNNGTC 1 cut(s) 107
DseDI GACNNNNNNGTC 1 cut(s) 107
Eam1104I CTCTTC 1 cut(s) 569
EarI CTCTTC 1 cut(s) 569
Eco105I TACGTA 1 cut(s) 418
Eco130I CCWWGG 1 cut(s) 456
EcoRI GAATTC 2 cut(s) 404, 552
EcoRII CCWGG 3 cut(s) 537, 592, 649
EcoT14I CCWWGG 1 cut(s) 456
ErhI CCWWGG 1 cut(s) 456
FaeI CATG 2 cut(s) 460, 683
FatI CATG 2 cut(s) 456, 679
FbaI TGATCA 1 cut(s) 165
FblI GTMKAC 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 148
FokI GGATG 1 cut(s) 175
Fsp4HI GCNGC 1 cut(s) 148
GluI GCNGC 1 cut(s) 148
HaeIII GGCC 1 cut(s) 56
HapII CCGG 1 cut(s) 187
Hin1II CATG 2 cut(s) 460, 683
HincII GTYRAC 1 cut(s) 32
HindII GTYRAC 1 cut(s) 32
HinfI GANTC 4 cut(s) 101, 429, 488, 617
HpaII CCGG 1 cut(s) 187
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 2 cut(s) 410, 616
Hpy188III TCNNGA 2 cut(s) 169, 401
Hpy8I GTNNAC 1 cut(s) 32
HpyCH4III ACNGT 1 cut(s) 497
HpyCH4IV ACGT 2 cut(s) 417, 600
HpyCH4V TGCA 3 cut(s) 95, 117, 610
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 147
HpyF3I CTNAG 4 cut(s) 255, 266, 387, 615
HpySE526I ACGT 2 cut(s) 417, 600
Hsp92II CATG 2 cut(s) 460, 683
Ksp22I TGATCA 1 cut(s) 165
Kzo9I GATC 4 cut(s) 165, 500, 583, 658
LmnI GCTCC 2 cut(s) 316, 703
Lsp1109I GCAGC 1 cut(s) 134
LweI GCATC 1 cut(s) 267
MaeII ACGT 2 cut(s) 417, 600
MaeIII GTNAC 3 cut(s) 242, 481, 618
MalI GATC 4 cut(s) 167, 502, 585, 660
MboI GATC 4 cut(s) 165, 500, 583, 658
MboII GAAGA 4 cut(s) 184, 321, 556, 668
MflI RGATCY 2 cut(s) 500, 583
MhlI GDGCHC 1 cut(s) 359
MluCI AATT 6 cut(s) 175, 208, 404, 552, 690, 721
MlyI GAGTC 3 cut(s) 95, 438, 626
MnlI CCTC 4 cut(s) 183, 195, 261, 270
MseI TTAA 3 cut(s) 9, 294, 684
MspI CCGG 1 cut(s) 187
MspR9I CCNGG 4 cut(s) 187, 539, 594, 651
MvaI CCWGG 3 cut(s) 539, 594, 651
MwoI GCNNNNNNNGC 2 cut(s) 68, 147
NciI CCSGG 1 cut(s) 187
NcoI CCATGG 1 cut(s) 456
NdeII GATC 4 cut(s) 165, 500, 583, 658
NlaIII CATG 2 cut(s) 460, 683
NlaIV GGNNCC 2 cut(s) 585, 705
NmuCI GTSAC 2 cut(s) 481, 618
NspI RCATGY 1 cut(s) 683
PcsI WCGNNNNNNNCGW 1 cut(s) 406
PfeI GAWTC 1 cut(s) 488
PfoI TCCNGGA 1 cut(s) 185
PkrI GCNGC 1 cut(s) 149
PleI GAGTC 3 cut(s) 95, 437, 625
PpsI GAGTC 3 cut(s) 95, 437, 625
Ppu21I YACGTR 1 cut(s) 418
Psp6I CCWGG 3 cut(s) 537, 592, 649
PspGI CCWGG 3 cut(s) 537, 592, 649
PspN4I GGNNCC 2 cut(s) 585, 705
PspPI GGNCC 1 cut(s) 54
PsuI RGATCY 2 cut(s) 500, 583
RsaI GTAC 2 cut(s) 416, 512
RsaNI GTAC 2 cut(s) 415, 511
SalI GTCGAC 1 cut(s) 30
SaqAI TTAA 3 cut(s) 9, 294, 684
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 4 cut(s) 165, 500, 583, 658
Sau96I GGNCC 1 cut(s) 54
SchI GAGTC 3 cut(s) 95, 438, 626
ScrFI CCNGG 4 cut(s) 187, 539, 594, 651
SduI GDGCHC 1 cut(s) 359
SfaNI GCATC 1 cut(s) 267
SfcI CTRYAG 1 cut(s) 493
SnaBI TACGTA 1 cut(s) 418
Sse9I AATT 6 cut(s) 175, 208, 404, 552, 690, 721
SspI AATATT 1 cut(s) 369
StyD4I CCNGG 4 cut(s) 185, 537, 592, 649
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 1 cut(s) 497
TaiI ACGT 2 cut(s) 420, 603
TaqI TCGA 2 cut(s) 31, 154
TasI AATT 6 cut(s) 175, 208, 404, 552, 690, 721
TfiI GAWTC 1 cut(s) 488
Tru1I TTAA 3 cut(s) 9, 294, 684
Tru9I TTAA 3 cut(s) 9, 294, 684
TscAI CASTG 3 cut(s) 73, 256, 502
TseFI GTSAC 2 cut(s) 481, 618
TseI GCWGC 1 cut(s) 147
Tsp45I GTSAC 2 cut(s) 481, 618
TspDTI ATGAA 1 cut(s) 654
TspRI CASTG 3 cut(s) 73, 256, 502
XapI RAATTY 3 cut(s) 175, 404, 552
XceI RCATGY 1 cut(s) 683
XcmI CCANNNNNNNNNTGG 1 cut(s) 545
XmiI GTMKAC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.