Rh5CG233100

Ubiquitin domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0014274
Physical Location & Seq
Reverse (-)
24190634 .. 24194505
3872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG233100.1

Sequence Viewer

Length: 345 bp
ATGGGCTGCGCCGGATCGTCGCAGAGCAAAGAAGACGGAGCTTTGAAAAAGATTCGGAAGCCAAAACCTTGGAAGCATCCCCAGCCAATAACAAAGACTCAGCTCTTGCAGCTGCGTGAAGAGTTTTGGGACACGGCTCCTCACTATGGTGGCAGGAAAGAGATTTGGGATGCTCTTCGAGCTGCTGCTGAGGCAGATCTAAGTCTAGCACAAGCTATTGTTGACAGTGCTGGGGTCATTGTTCAGAGTGCTGATTTGACAATTTGCTATGATGAAAGAGGTGCAAAATACGAACTACCCAAGTATGTTTTGAGTGAGCCAACCAACTTGATTCGAGAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBD

Protein Analysis

114

Amino Acids

12.7

Weight (kDa)

6.73

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBD PF16455 16 - 113 6.5e-38 Ubiquitin-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014274)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16960 AT1G53400 AT5G45740
fragaria_vesca FvH4_3g18130
malus_domestica MD11G1265800.v1.1
prunus_persica Prupe.4G160100_v2.0.a1
pyrus_communis pycom03g19390 pycom11g23370
rosa_chinensis RchiOBHm_Chr5g0030541
rosa_laevigata RLG00000033224
rosa_multiflora Rmu_sc0013101.1_g000004
rosa_roxburghii Rroxscaffold_1G00049770
rosa_rugosa Rorug05G0118300
rosa_samantha Rh5BG209700 Rh5CG233100 Rh5DG214200
rosa_wichuraiana Rw5G019240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 1 cut(s) 46
AleI CACNNNNGTG 1 cut(s) 147
AluBI AGCT 5 cut(s) 41, 103, 112, 182, 215
AluI AGCT 5 cut(s) 41, 103, 112, 182, 215
AlwI GGATC 1 cut(s) 22
ApeKI GCWGC 5 cut(s) 6, 109, 112, 182, 185
AspLEI GCGC 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 39
BbvCI CCTCAGC 1 cut(s) 189
BbvI GCAGC 4 cut(s) 99, 121, 169, 172
BceAI ACGGC 1 cut(s) 150
BfaI CTAG 1 cut(s) 206
BglII AGATCT 1 cut(s) 196
BisI GCNGC 5 cut(s) 7, 110, 113, 183, 186
BlsI GCNGC 5 cut(s) 8, 111, 114, 184, 187
BmiI GGNNCC 1 cut(s) 138
BmsI GCATC 2 cut(s) 85, 160
BpiI GAAGAC 1 cut(s) 39
Bpu10I CCTNAGC 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 68
BseGI GGATG 2 cut(s) 76, 175
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMII CTCAG 2 cut(s) 113, 180
BseRI GAGGAG 1 cut(s) 129
BseXI GCAGC 4 cut(s) 99, 121, 169, 172
BseYI CCCAGC 2 cut(s) 81, 230
BsiSI CCGG 1 cut(s) 12
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 143
Bsp143I GATC 2 cut(s) 14, 196
BspCNI CTCAG 2 cut(s) 112, 181
BspLI GGNNCC 1 cut(s) 138
BspPI GGATC 1 cut(s) 22
BspQI GCTCTTC 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 68
BssMI GATC 2 cut(s) 14, 196
BssT1I CCWWGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 2 cut(s) 114, 180
BstDEI CTNAG 3 cut(s) 99, 189, 200
BstF5I GGATG 2 cut(s) 76, 175
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 2 cut(s) 17, 199
BstMBI GATC 2 cut(s) 14, 196
BstMWI GCNNNNNNNGC 4 cut(s) 82, 109, 179, 191
BstV1I GCAGC 4 cut(s) 99, 121, 169, 172
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 196
BstXI CCANNNNNNTGG 1 cut(s) 69
BstYI RGATCY 1 cut(s) 196
BtsCI GGATG 2 cut(s) 76, 175
BtsIMutI CAGTG 1 cut(s) 232
CfoI GCGC 1 cut(s) 11
DdeI CTNAG 3 cut(s) 99, 189, 200
DpnI GATC 2 cut(s) 16, 198
DpnII GATC 2 cut(s) 14, 196
Eam1104I CTCTTC 2 cut(s) 114, 180
EarI CTCTTC 2 cut(s) 114, 180
Eco130I CCWWGG 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 68
FaiI YATR 3 cut(s) 147, 270, 306
FaqI GGGAC 1 cut(s) 143
Fnu4HI GCNGC 5 cut(s) 7, 110, 113, 183, 186
FokI GGATG 2 cut(s) 63, 182
Fsp4HI GCNGC 5 cut(s) 7, 110, 113, 183, 186
FspBI CTAG 1 cut(s) 206
GlaI GCGC 1 cut(s) 10
GluI GCNGC 5 cut(s) 7, 110, 113, 183, 186
GsaI CCCAGC 2 cut(s) 85, 234
HapII CCGG 1 cut(s) 12
HhaI GCGC 1 cut(s) 11
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 3 cut(s) 52, 97, 331
HpaII CCGG 1 cut(s) 12
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 2 cut(s) 57, 246
Hpy188III TCNNGA 1 cut(s) 335
Hpy8I GTNNAC 1 cut(s) 223
Hpy99I CGWCG 1 cut(s) 22
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4V TGCA 2 cut(s) 109, 284
HpyF10VI GCNNNNNNNGC 4 cut(s) 82, 109, 179, 191
HpyF3I CTNAG 3 cut(s) 99, 189, 200
HspAI GCGC 1 cut(s) 9
Kzo9I GATC 2 cut(s) 14, 196
LguI GCTCTTC 1 cut(s) 180
LmnI GCTCC 2 cut(s) 38, 142
LpnPI CCDG 4 cut(s) 25, 95, 139, 216
Lsp1109I GCAGC 4 cut(s) 99, 121, 169, 172
LweI GCATC 2 cut(s) 85, 160
MaeI CTAG 1 cut(s) 206
MalI GATC 2 cut(s) 16, 198
MboI GATC 2 cut(s) 14, 196
MboII GAAGA 3 cut(s) 44, 131, 167
MflI RGATCY 1 cut(s) 196
MluCI AATT 1 cut(s) 261
MlyI GAGTC 1 cut(s) 91
MnlI CCTC 3 cut(s) 150, 184, 272
MseI TTAA 1 cut(s) 343
MslI CAYNNNNRTG 1 cut(s) 147
MspA1I CMGCKG 1 cut(s) 112
MspI CCGG 1 cut(s) 12
MwoI GCNNNNNNNGC 4 cut(s) 82, 109, 179, 191
NdeII GATC 2 cut(s) 14, 196
NlaIV GGNNCC 1 cut(s) 138
OliI CACNNNNGTG 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 180
PfeI GAWTC 2 cut(s) 52, 331
PkrI GCNGC 5 cut(s) 8, 111, 114, 184, 187
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PspFI CCCAGC 2 cut(s) 81, 230
PspN4I GGNNCC 1 cut(s) 138
PsuI RGATCY 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 112
RseI CAYNNNNRTG 1 cut(s) 147
SapI GCTCTTC 1 cut(s) 180
SaqAI TTAA 1 cut(s) 343
SatI GCNGC 5 cut(s) 7, 110, 113, 183, 186
Sau3AI GATC 2 cut(s) 14, 196
SchI GAGTC 1 cut(s) 91
SetI ASST 7 cut(s) 43, 70, 105, 114, 184, 217, 283
SfaNI GCATC 2 cut(s) 85, 160
SmiMI CAYNNNNRTG 1 cut(s) 147
Sse9I AATT 1 cut(s) 261
SspMI CTAG 1 cut(s) 206
StyI CCWWGG 1 cut(s) 68
TaaI ACNGT 1 cut(s) 227
TaqI TCGA 2 cut(s) 178, 334
TasI AATT 1 cut(s) 261
TfiI GAWTC 2 cut(s) 52, 331
Tru1I TTAA 1 cut(s) 343
Tru9I TTAA 1 cut(s) 343
TscAI CASTG 1 cut(s) 232
TseI GCWGC 5 cut(s) 6, 109, 112, 182, 185
TspDTI ATGAA 1 cut(s) 288
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 1 cut(s) 232
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.