Rroxscaffold_1G00049770

Ubiquitin domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014274
Physical Location & Seq
Forward (+)
70119758 .. 70123563
3806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00049770.1

Sequence Viewer

Length: 411 bp
ATGGGCTGCACCGGATCGTCGCAGAGCAAAGAAGACGGAGCTTTGAAAAAGATTCGGAAGCCAAAACCTTGGAAGCATCCCCAGCCAATAACAAAGACTCAGCTCTTGCAGCTGCGTGAAGAGTTTTGGGACACAGCTCCTCACTATGGTGGCAGGAAAGAGATTTGGGATGCTCTTCGAGCTGCTGCTGAGGCAGATCTAAGTCTAGCACAAGCTATTGTTGACAGTGCTGGGGTCATTGTTCAGAGTGCTGATTTGACAATTTGCTATGATGAAAGAGAGCTGCTAGGATTTAGTGATGCTGAAGGGTTCAAAGTATCAGTACTTTGTGATGTCTACACTTTGGGTGCTAAATATGAACTACCCAAGTATGTTTTGAGTGAGCCAACCAACTTGATTCGAGAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBD

Protein Analysis

136

Amino Acids

15.11

Weight (kDa)

5.42

Isoelectric Point (pI)

35.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBD PF16455 16 - 93 2e-26 Ubiquitin-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014274)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16960 AT1G53400 AT5G45740
fragaria_vesca FvH4_3g18130
malus_domestica MD11G1265800.v1.1
prunus_persica Prupe.4G160100_v2.0.a1
pyrus_communis pycom03g19390 pycom11g23370
rosa_chinensis RchiOBHm_Chr5g0030541
rosa_laevigata RLG00000033224
rosa_multiflora Rmu_sc0013101.1_g000004
rosa_roxburghii Rroxscaffold_1G00049770
rosa_rugosa Rorug05G0118300
rosa_samantha Rh5BG209700 Rh5CG233100 Rh5DG214200
rosa_wichuraiana Rw5G019240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 336
AclWI GGATC 1 cut(s) 22
AcuI CTGAAG 1 cut(s) 324
AfaI GTAC 1 cut(s) 324
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 2 cut(s) 46, 313
AleI CACNNNNGTG 1 cut(s) 147
AluBI AGCT 7 cut(s) 41, 103, 112, 137, 182, 215, 283
AluI AGCT 7 cut(s) 41, 103, 112, 137, 182, 215, 283
AlwI GGATC 1 cut(s) 22
ApeKI GCWGC 6 cut(s) 6, 109, 112, 182, 185, 283
BbsI GAAGAC 1 cut(s) 39
BbvCI CCTCAGC 1 cut(s) 189
BbvI GCAGC 5 cut(s) 99, 121, 169, 172, 270
BfaI CTAG 2 cut(s) 206, 287
BglII AGATCT 1 cut(s) 196
BisI GCNGC 6 cut(s) 7, 110, 113, 183, 186, 284
BlsI GCNGC 6 cut(s) 8, 111, 114, 184, 187, 285
BmcAI AGTACT 1 cut(s) 324
BmsI GCATC 3 cut(s) 85, 160, 289
BpiI GAAGAC 1 cut(s) 39
Bpu10I CCTNAGC 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 68
BsaWI WCCGGW 1 cut(s) 11
Bsc4I CCNNNNNNNGG 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 68
BseGI GGATG 2 cut(s) 76, 175
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMII CTCAG 2 cut(s) 113, 180
BseRI GAGGAG 1 cut(s) 129
BseXI GCAGC 5 cut(s) 99, 121, 169, 172, 270
BseYI CCCAGC 2 cut(s) 81, 230
BsiSI CCGG 1 cut(s) 12
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 143
Bsp143I GATC 2 cut(s) 14, 196
BspCNI CTCAG 2 cut(s) 112, 181
BspPI GGATC 1 cut(s) 22
BspQI GCTCTTC 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 68
BssMI GATC 2 cut(s) 14, 196
BssT1I CCWWGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 2 cut(s) 114, 180
BstDEI CTNAG 3 cut(s) 99, 189, 200
BstF5I GGATG 2 cut(s) 76, 175
BstKTI GATC 2 cut(s) 17, 199
BstMBI GATC 2 cut(s) 14, 196
BstMWI GCNNNNNNNGC 4 cut(s) 82, 109, 179, 191
BstV1I GCAGC 5 cut(s) 99, 121, 169, 172, 270
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 196
BstXI CCANNNNNNTGG 1 cut(s) 69
BstYI RGATCY 1 cut(s) 196
BtsCI GGATG 2 cut(s) 76, 175
BtsIMutI CAGTG 1 cut(s) 232
Csp6I GTAC 1 cut(s) 323
CviQI GTAC 1 cut(s) 323
DdeI CTNAG 3 cut(s) 99, 189, 200
DpnI GATC 2 cut(s) 16, 198
DpnII GATC 2 cut(s) 14, 196
Eam1104I CTCTTC 2 cut(s) 114, 180
EarI CTCTTC 2 cut(s) 114, 180
Eco130I CCWWGG 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 68
FaiI YATR 4 cut(s) 147, 270, 357, 372
FaqI GGGAC 1 cut(s) 143
FblI GTMKAC 1 cut(s) 336
Fnu4HI GCNGC 6 cut(s) 7, 110, 113, 183, 186, 284
FokI GGATG 2 cut(s) 63, 182
Fsp4HI GCNGC 6 cut(s) 7, 110, 113, 183, 186, 284
FspBI CTAG 2 cut(s) 206, 287
GluI GCNGC 6 cut(s) 7, 110, 113, 183, 186, 284
GsaI CCCAGC 2 cut(s) 85, 234
HapII CCGG 1 cut(s) 12
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 3 cut(s) 52, 97, 397
HpaII CCGG 1 cut(s) 12
Hpy166II GTNNAC 2 cut(s) 223, 337
Hpy188I TCNGA 2 cut(s) 57, 246
Hpy188III TCNNGA 1 cut(s) 401
Hpy8I GTNNAC 2 cut(s) 223, 337
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 1 cut(s) 299
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4V TGCA 2 cut(s) 9, 109
HpyF10VI GCNNNNNNNGC 4 cut(s) 82, 109, 179, 191
HpyF3I CTNAG 3 cut(s) 99, 189, 200
Kzo9I GATC 2 cut(s) 14, 196
LguI GCTCTTC 1 cut(s) 180
LmnI GCTCC 2 cut(s) 38, 142
LpnPI CCDG 4 cut(s) 25, 95, 139, 216
Lsp1109I GCAGC 5 cut(s) 99, 121, 169, 172, 270
LweI GCATC 3 cut(s) 85, 160, 289
MaeI CTAG 2 cut(s) 206, 287
MalI GATC 2 cut(s) 16, 198
MboI GATC 2 cut(s) 14, 196
MboII GAAGA 3 cut(s) 44, 131, 167
MflI RGATCY 1 cut(s) 196
MluCI AATT 1 cut(s) 261
MlyI GAGTC 1 cut(s) 91
MnlI CCTC 2 cut(s) 150, 184
MseI TTAA 1 cut(s) 409
MslI CAYNNNNRTG 1 cut(s) 147
MspA1I CMGCKG 1 cut(s) 112
MspI CCGG 1 cut(s) 12
MwoI GCNNNNNNNGC 4 cut(s) 82, 109, 179, 191
NdeII GATC 2 cut(s) 14, 196
OliI CACNNNNGTG 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 180
PfeI GAWTC 2 cut(s) 52, 397
PkrI GCNGC 6 cut(s) 8, 111, 114, 184, 187, 285
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PspFI CCCAGC 2 cut(s) 81, 230
PsuI RGATCY 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 112
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
RseI CAYNNNNRTG 1 cut(s) 147
SapI GCTCTTC 1 cut(s) 180
SaqAI TTAA 1 cut(s) 409
SatI GCNGC 6 cut(s) 7, 110, 113, 183, 186, 284
Sau3AI GATC 2 cut(s) 14, 196
ScaI AGTACT 1 cut(s) 324
SchI GAGTC 1 cut(s) 91
SetI ASST 8 cut(s) 43, 70, 105, 114, 139, 184, 217, 285
SfaNI GCATC 3 cut(s) 85, 160, 289
SmiMI CAYNNNNRTG 1 cut(s) 147
Sse9I AATT 1 cut(s) 261
SspMI CTAG 2 cut(s) 206, 287
StyI CCWWGG 1 cut(s) 68
TaaI ACNGT 1 cut(s) 227
TaqI TCGA 2 cut(s) 178, 400
TasI AATT 1 cut(s) 261
TatI WGTACW 1 cut(s) 322
TfiI GAWTC 2 cut(s) 52, 397
Tru1I TTAA 1 cut(s) 409
Tru9I TTAA 1 cut(s) 409
TscAI CASTG 1 cut(s) 232
TseI GCWGC 6 cut(s) 6, 109, 112, 182, 185, 283
TspDTI ATGAA 2 cut(s) 288, 372
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 336
XspI CTAG 2 cut(s) 206, 287
ZrmI AGTACT 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.