Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013537

Physical Location & Seq

Genomic Coordinates Forward (+)

18950843 .. 18953127

Gene Structure 2285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G46700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGCCTTTAAGCAACAATGTAATTGGTTGCATAAACTTCATCACCGTCCTCCTCTCCATTCCGGTCATCGGCGCCGGAATCTGGCTAGCCATAGGAACAGTAAACTCATGCGTCAAGCTTCTTCAATGGCCAGTAATAATCCTCGGAGTCTTAATCCTCTTAGTGGGTCTCGCTGGTTTCATTGGAGGGTTTTGGAGAATCACATGGCTTCTTGTTGTTTACTTAATCGCCATGCTTATTCTCATTGTACTTTTGGGTTGCCTTGTCGGATTTATTTACATGGTTACCATAAGAGGCTCTGGTCATCCAGAACCAAGTAGAGCTTATCTTGAGTATAGTCTTCAAGATTTCTCTGGTTGGTTACGTAGAAGAGTTCAGAGATCTTATAAATGGGAAAGGATTCGTACTTGTTTGAGTACAACTACCATTTGCCCTGAACTAAATCAGAGATACACTTTGGCTCAAGATTTCTTCAATGCTCATCTTGATCCCATTCAATCTGGTTGCTGCAAGCCCCCAACAAAATGTGGATTCACATTTGTTAATCCTACTTATTGGATAAGTCCCATAGATATGTCTGCTGATATGGATTGTCTAAATTGGAGCAATGACCAAAACACTTTGTGTTACACTTGTGATTCTTGTAAAGCCGGCTTGCTCGCAAATATTAAGGTAGATTGGTTAAAAGCGGATATCTTTCTACTCTTGGCGCTTATCGGATTGATTATCGTCTACATTATCGGGTGCTGCGCATTCCGTAATGCGGAAACTGAGGATATTTTCAGGAAGTACAAGCAGGGTTATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0009506 GO:0009553 GO:0009554 GO:0009653 GO:0009888 GO:0009933 GO:0009934 GO:0009956 GO:0009987 GO:0010015 GO:0010051 GO:0010305 GO:0016020 GO:0019953 GO:0022402 GO:0022414 GO:0022603 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048364 GO:0048507 GO:0048509 GO:0048532 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0051321 GO:0051704 GO:0055044 GO:0065007 GO:0071944 GO:0099402 GO:1903046 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

269

Amino Acids

30.29

Weight (kDa)

8.36

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tetraspanin	PF00335	5 - 251	7.1e-31	Tetraspanin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46700
fragaria_vesca	FvH4_5g22280 FvH4_5g22280
malus_domestica	MD06G1035600.v1.1 MD16G1272800.v1.1
prunus_persica	Prupe.5G034100_v2.0.a1
pyrus_communis	pycom06g02930 pycom16g24270
rosa_chinensis	RchiOBHm_Chr7g0209961
rosa_laevigata	RLG00000003073
rosa_multiflora	Rmu_sc0004509.1_g000011
rosa_roxburghii	Rroxscaffold_3G00248760
rosa_rugosa	Rorug07G0117800
rosa_samantha	Rh7AG251500 Rh7BG246200 Rh7CG268300 Rh7DG258300
rosa_wichuraiana	Rw7G021350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	387
Acc16I	TGCGCA	1 cut(s)	751
AccB1I	GGYRCC	1 cut(s)	71
AccI	GTMKAC	1 cut(s)	732
AciI	CCGC	2 cut(s)	689, 764
AclWI	GGATC	1 cut(s)	482
AcoI	YGGCCR	1 cut(s)	128
AcyI	GRCGYC	1 cut(s)	72
AdeI	CACNNNGTG	1 cut(s)	624
AfaI	GTAC	4 cut(s)	249, 406, 418, 791
AfiI	CCNNNNNNNGG	4 cut(s)	68, 81, 163, 763
AgsI	TTSAA	4 cut(s)	125, 344, 475, 497
AluBI	AGCT	2 cut(s)	118, 323
AluI	AGCT	2 cut(s)	118, 323
Alw26I	GTCTC	1 cut(s)	173
AlwI	GGATC	1 cut(s)	482
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	2 cut(s)	507, 747
Asp700I	GAANNNNTTC	1 cut(s)	399
AspLEI	GCGC	3 cut(s)	74, 712, 752
AsuHPI	GGTGA	1 cut(s)	34
AsuNHI	GCTAGC	1 cut(s)	85
BalI	TGGCCA	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	332
BbvI	GCAGC	2 cut(s)	494, 734
BcoDI	GTCTC	1 cut(s)	173
BfaI	CTAG	1 cut(s)	86
BfoI	RGCGCY	2 cut(s)	75, 713
BglII	AGATCT	1 cut(s)	380
BisI	GCNGC	2 cut(s)	508, 748
BlsI	GCNGC	2 cut(s)	509, 749
BmiI	GGNNCC	1 cut(s)	73
BmtI	GCTAGC	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	332
BpuEI	CTTGAG	2 cut(s)	350, 447
BsaAI	YACGTR	1 cut(s)	365
BsaHI	GRCGYC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	142
BsaWI	WCCGGW	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	4 cut(s)	68, 81, 163, 763
Bse118I	RCCGGY	1 cut(s)	650
Bse1I	ACTGG	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	613
BseDI	CCNNGG	1 cut(s)	142
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	4 cut(s)	68, 81, 163, 763
BseMI	GCAATG	1 cut(s)	613
BseMII	CTCAG	1 cut(s)	762
BseNI	ACTGG	1 cut(s)	131
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	2 cut(s)	494, 734
BshFI	GGCC	1 cut(s)	130
BshNI	GGYRCC	1 cut(s)	71
BsiSI	CCGG	3 cut(s)	62, 75, 651
BslFI	GGGAC	1 cut(s)	549
BslI	CCNNNNNNNGG	4 cut(s)	68, 81, 163, 763
BsmAI	GTCTC	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	549
BsmI	GAATGC	1 cut(s)	752
BsnI	GGCC	1 cut(s)	130
Bso31I	GGTCTC	1 cut(s)	173
Bsp143I	GATC	2 cut(s)	380, 487
BspACI	CCGC	2 cut(s)	689, 764
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	763
BspLI	GGNNCC	1 cut(s)	73
BspOI	GCTAGC	1 cut(s)	89
BspPI	GGATC	1 cut(s)	482
BspT107I	GGYRCC	1 cut(s)	71
BspTNI	GGTCTC	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	613
BsrFI	RCCGGY	1 cut(s)	650
BsrI	ACTGG	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	650
BssECI	CCNNGG	1 cut(s)	142
BssMI	GATC	2 cut(s)	380, 487
BssNI	GRCGYC	1 cut(s)	72
Bst4CI	ACNGT	2 cut(s)	46, 100
Bst6I	CTCTTC	1 cut(s)	364
BstACI	GRCGYC	1 cut(s)	72
BstBAI	YACGTR	1 cut(s)	365
BstC8I	GCNNGC	5 cut(s)	87, 512, 652, 656, 660
BstDEI	CTNAG	2 cut(s)	160, 771
BstEII	GGTNACC	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	304
BstH2I	RGCGCY	2 cut(s)	75, 713
BstHHI	GCGC	3 cut(s)	74, 712, 752
BstKTI	GATC	2 cut(s)	383, 490
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	2 cut(s)	380, 487
BstPI	GGTNACC	1 cut(s)	283
BstSNI	TACGTA	1 cut(s)	365
BstV1I	GCAGC	2 cut(s)	494, 734
BstV2I	GAAGAC	1 cut(s)	332
BstX2I	RGATCY	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	380
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	304
Cac8I	GCNNGC	5 cut(s)	87, 512, 652, 656, 660
CfoI	GCGC	3 cut(s)	74, 712, 752
Cfr10I	RCCGGY	1 cut(s)	650
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	4 cut(s)	248, 405, 417, 790
CviAII	CATG	4 cut(s)	108, 204, 232, 280
CviQI	GTAC	4 cut(s)	248, 405, 417, 790
DdeI	CTNAG	2 cut(s)	160, 771
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	2 cut(s)	382, 489
DpnII	GATC	2 cut(s)	380, 487
DraIII	CACNNNGTG	1 cut(s)	624
EaeI	YGGCCR	1 cut(s)	128
Eam1104I	CTCTTC	1 cut(s)	364
EarI	CTCTTC	1 cut(s)	364
Eco105I	TACGTA	1 cut(s)	365
Eco31I	GGTCTC	1 cut(s)	173
Eco32I	GATATC	1 cut(s)	694
Eco91I	GGTNACC	1 cut(s)	283
EcoO65I	GGTNACC	1 cut(s)	283
EcoRV	GATATC	1 cut(s)	694
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
FaeI	CATG	4 cut(s)	111, 207, 235, 283
FalI	AAGNNNNNCTT	2 cut(s)	307, 339
FaqI	GGGAC	1 cut(s)	549
FatI	CATG	4 cut(s)	107, 203, 231, 279
FblI	GTMKAC	1 cut(s)	732
Fnu4HI	GCNGC	2 cut(s)	508, 748
FokI	GGATG	1 cut(s)	291
Fsp4HI	GCNGC	2 cut(s)	508, 748
FspBI	CTAG	1 cut(s)	86
FspI	TGCGCA	1 cut(s)	751
GlaI	GCGC	3 cut(s)	73, 711, 751
GluI	GCNGC	2 cut(s)	508, 748
HaeII	RGCGCY	2 cut(s)	75, 713
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	3 cut(s)	62, 75, 651
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	3 cut(s)	74, 712, 752
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	4 cut(s)	111, 207, 235, 283
Hin6I	GCGC	3 cut(s)	72, 710, 750
HinP1I	GCGC	3 cut(s)	72, 710, 750
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	6 cut(s)	78, 147, 198, 400, 531, 638
HpaII	CCGG	3 cut(s)	62, 75, 651
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	3 cut(s)	103, 220, 733
Hpy188I	TCNGA	5 cut(s)	146, 269, 378, 447, 719
Hpy188III	TCNNGA	6 cut(s)	308, 329, 344, 464, 485, 784
Hpy8I	GTNNAC	3 cut(s)	103, 220, 733
HpyCH4III	ACNGT	2 cut(s)	46, 100
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	2 cut(s)	30, 510
HpyF3I	CTNAG	2 cut(s)	160, 771
HpySE526I	ACGT	1 cut(s)	364
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	4 cut(s)	111, 207, 235, 283
HspAI	GCGC	3 cut(s)	72, 710, 750
KasI	GGCGCC	1 cut(s)	71
KroI	GCCGGC	1 cut(s)	650
KroNI	GCCGGC	1 cut(s)	652
Kzo9I	GATC	2 cut(s)	380, 487
LmnI	GCTCC	1 cut(s)	603
Lsp1109I	GCAGC	2 cut(s)	494, 734
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	3 cut(s)	283, 360, 626
MalI	GATC	2 cut(s)	382, 489
MboI	GATC	2 cut(s)	380, 487
MboII	GAAGA	4 cut(s)	113, 332, 381, 463
MflI	RGATCY	1 cut(s)	380
MlsI	TGGCCA	1 cut(s)	130
MluCI	AATT	2 cut(s)	21, 598
MluNI	TGGCCA	1 cut(s)	130
Mly113I	GGCGCC	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	7 cut(s)	59, 62, 152, 167, 179, 287, 766
Mox20I	TGGCCA	1 cut(s)	130
MroNI	GCCGGC	1 cut(s)	650
MroXI	GAANNNNTTC	1 cut(s)	399
MscI	TGGCCA	1 cut(s)	130
MseI	TTAA	6 cut(s)	8, 152, 224, 543, 669, 683
MslI	CAYNNNNRTG	1 cut(s)	572
Msp20I	TGGCCA	1 cut(s)	130
MspI	CCGG	3 cut(s)	62, 75, 651
Mva1269I	GAATGC	1 cut(s)	752
NaeI	GCCGGC	1 cut(s)	652
NarI	GGCGCC	1 cut(s)	72
NdeII	GATC	2 cut(s)	380, 487
NgoMIV	GCCGGC	1 cut(s)	650
NheI	GCTAGC	1 cut(s)	85
NlaIII	CATG	4 cut(s)	111, 207, 235, 283
NlaIV	GGNNCC	1 cut(s)	73
NsbI	TGCGCA	1 cut(s)	751
PctI	GAATGC	1 cut(s)	752
PdiI	GCCGGC	1 cut(s)	652
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	5 cut(s)	78, 198, 400, 531, 638
PkrI	GCNGC	2 cut(s)	509, 749
PleI	GAGTC	1 cut(s)	155
PluTI	GGCGCC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	155
Ppu21I	YACGTR	1 cut(s)	365
PsiI	TTATAA	1 cut(s)	387
PspEI	GGTNACC	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	380
RsaI	GTAC	4 cut(s)	249, 406, 418, 791
RsaNI	GTAC	4 cut(s)	248, 405, 417, 790
RseI	CAYNNNNRTG	1 cut(s)	572
SaqAI	TTAA	6 cut(s)	8, 152, 224, 543, 669, 683
SatI	GCNGC	2 cut(s)	508, 748
Sau3AI	GATC	2 cut(s)	380, 487
SchI	GAGTC	1 cut(s)	156
SetI	ASST	4 cut(s)	120, 325, 367, 675
SfoI	GGCGCC	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	572
SmlI	CTYRAG	2 cut(s)	329, 462
SmoI	CTYRAG	2 cut(s)	329, 462
SnaBI	TACGTA	1 cut(s)	365
Sse9I	AATT	2 cut(s)	21, 598
SsiI	CCGC	2 cut(s)	689, 764
SspDI	GGCGCC	1 cut(s)	71
SspI	AATATT	1 cut(s)	667
SspMI	CTAG	1 cut(s)	86
TaaI	ACNGT	2 cut(s)	46, 100
TaiI	ACGT	1 cut(s)	367
TasI	AATT	2 cut(s)	21, 598
TatI	WGTACW	3 cut(s)	247, 416, 789
TfiI	GAWTC	5 cut(s)	78, 198, 400, 531, 638
Tru1I	TTAA	6 cut(s)	8, 152, 224, 543, 669, 683
Tru9I	TTAA	6 cut(s)	8, 152, 224, 543, 669, 683
TseI	GCWGC	2 cut(s)	507, 747
TspDTI	ATGAA	2 cut(s)	28, 169
TspGWI	ACGGA	1 cut(s)	746
XmiI	GTMKAC	1 cut(s)	732
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.