Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0013537

Physical Location & Seq

Genomic Coordinates Forward (+)

25519221 .. 25521129

Gene Structure 1909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g24270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCACTTAGCAACAATGTCATCGGAGCCATCAACTTCGTTGCGATGCTGCTCTCAATTCCAATCATTGGTGCAGGAATTTGGCTCGCAACAGAGCCAGACAATTCTTGTGTAAAGCTTATACAATGGCCTGTCATAATTTTAGGCATCTTGTTCCTGGTTGTGGCCATTGCAGGCTTTGTGGGAGCGTTTTGGAGGATCCCATGGCTCCTTATCTCTTACCTCATTGCCATGCTGGTTCTTATAATCTTGCTTGCTGCTCTGGTGGTTTGCATCTACATGGTCACCATTAGAGGCTCTGGCCACCTCGAGCCGAGCCGGTCTTACTTGGAATATCGTCTTGATGATTACTCCGGTTGGCTTCGCCGTAGAGTTCGAAACCCTTTCAAGTGGGCACGCATAAGAACTTGTCTTAGCTCAACAAATATGTGTGATGAGTTGAATCAGAGATATCGCATGGCTCAAGATTTTTTTAACGCGCACATTACCCCCTTACAGTCAGGATGCTGTAAGCCACCCACACAATGTGGGTACACGTTCGTGAATCCAACGTACTGGATAAGTCCCATAAACAACGCAGCCGACATGGATTGCCTGCAATGGAGCAACGACCAGACCCAACTTTGCTTCAACTGCGATTCCTGCAAAGCTGGATTACTTGCTAATCTCAAGAAAGAATGGAGAAGAACCAACATTATATTGCTCATCACTCTTATTTCTCTCGTTGCCGTTTATTTGATAGGCTGCTGTGCCTTTAGGAATGCCAAAACCGAAGACCTTTTCCGTAAATACAAGCAAGGCTATACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0009506 GO:0009553 GO:0009554 GO:0009653 GO:0009888 GO:0009933 GO:0009934 GO:0009956 GO:0009987 GO:0010015 GO:0010051 GO:0010305 GO:0016020 GO:0019953 GO:0022402 GO:0022414 GO:0022603 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048364 GO:0048507 GO:0048509 GO:0048532 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0051321 GO:0051704 GO:0055044 GO:0065007 GO:0071944 GO:0099402 GO:1903046 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

270

Amino Acids

30.57

Weight (kDa)

8.97

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46700
fragaria_vesca	FvH4_5g22280 FvH4_5g22280
malus_domestica	MD06G1035600.v1.1 MD16G1272800.v1.1
prunus_persica	Prupe.5G034100_v2.0.a1
pyrus_communis	pycom06g02930 pycom16g24270
rosa_chinensis	RchiOBHm_Chr7g0209961
rosa_laevigata	RLG00000003073
rosa_multiflora	Rmu_sc0004509.1_g000011
rosa_roxburghii	Rroxscaffold_3G00248760
rosa_rugosa	Rorug07G0117800
rosa_samantha	Rh7AG251500 Rh7BG246200 Rh7CG268300 Rh7DG258300
rosa_wichuraiana	Rw7G021350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	245
AccB7I	CCANNNNNTGG	1 cut(s)	68
AccII	CGCG	1 cut(s)	479
AclWI	GGATC	2 cut(s)	193, 206
AcoI	YGGCCR	2 cut(s)	165, 301
AcsI	RAATTY	1 cut(s)	78
AdeI	CACNNNGTG	1 cut(s)	527
AfaI	GTAC	2 cut(s)	533, 554
AfiI	CCNNNNNNNGG	2 cut(s)	68, 163
AflIII	ACRYGT	1 cut(s)	534
AgsI	TTSAA	3 cut(s)	388, 442, 631
AjnI	CCWGG	1 cut(s)	156
AleI	CACNNNNGTG	1 cut(s)	539
AluBI	AGCT	3 cut(s)	118, 417, 650
AluI	AGCT	3 cut(s)	118, 417, 650
AlwI	GGATC	2 cut(s)	193, 206
Ama87I	CYCGRG	1 cut(s)	308
AoxI	GGCC	3 cut(s)	128, 165, 301
ApeKI	GCWGC	4 cut(s)	49, 257, 578, 744
ApoI	RAATTY	1 cut(s)	78
AspLEI	GCGC	1 cut(s)	481
AsuHPI	GGTGA	1 cut(s)	277
AsuII	TTCGAA	1 cut(s)	376
AvaI	CYCGRG	1 cut(s)	308
BaeGI	GKGCMC	1 cut(s)	397
BalI	TGGCCA	2 cut(s)	167, 303
BamHI	GGATCC	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	780
BbvI	GCAGC	4 cut(s)	36, 244, 590, 731
BccI	CCATC	1 cut(s)	38
BceAI	ACGGC	2 cut(s)	351, 713
BciT130I	CCWGG	1 cut(s)	158
BisI	GCNGC	4 cut(s)	50, 258, 579, 745
BlsI	GCNGC	4 cut(s)	51, 259, 580, 746
Bme1390I	CCNGG	1 cut(s)	158
BmeT110I	CYCGRG	1 cut(s)	308
BmiI	GGNNCC	3 cut(s)	28, 200, 209
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	4 cut(s)	36, 156, 282, 494
BpiI	GAAGAC	1 cut(s)	780
Bpu14I	TTCGAA	1 cut(s)	376
BpuEI	CTTGAG	2 cut(s)	447, 653
BsaJI	CCNNGG	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 163
Bse118I	RCCGGY	1 cut(s)	318
Bse1I	ACTGG	1 cut(s)	560
Bse3DI	GCAATG	3 cut(s)	168, 225, 605
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	1 cut(s)	203
BseGI	GGATG	1 cut(s)	509
BseLI	CCNNNNNNNGG	2 cut(s)	68, 163
BseMI	GCAATG	3 cut(s)	168, 225, 605
BseNI	ACTGG	1 cut(s)	560
BseSI	GKGCMC	1 cut(s)	397
BseXI	GCAGC	4 cut(s)	36, 244, 590, 731
BsgI	GTGCAG	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	479
BshFI	GGCC	3 cut(s)	130, 167, 303
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	2 cut(s)	319, 354
BslFI	GGGAC	1 cut(s)	549
BslI	CCNNNNNNNGG	2 cut(s)	68, 163
BsmFI	GGGAC	1 cut(s)	549
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	3 cut(s)	130, 167, 303
BsoBI	CYCGRG	1 cut(s)	308
Bsp119I	TTCGAA	1 cut(s)	376
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	1 cut(s)	198
Bsp19I	CCATGG	1 cut(s)	203
BspANI	GGCC	3 cut(s)	130, 167, 303
BspFNI	CGCG	1 cut(s)	479
BspLI	GGNNCC	3 cut(s)	28, 200, 209
BspPI	GGATC	2 cut(s)	193, 206
BspT104I	TTCGAA	1 cut(s)	376
BsrDI	GCAATG	3 cut(s)	168, 225, 605
BsrFI	RCCGGY	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	560
BssAI	RCCGGY	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	1 cut(s)	198
BssT1I	CCWWGG	1 cut(s)	203
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	498
BstBI	TTCGAA	1 cut(s)	376
BstC8I	GCNNGC	5 cut(s)	87, 175, 255, 397, 596
BstDEI	CTNAG	2 cut(s)	8, 413
BstDSI	CCRYGG	1 cut(s)	203
BstEII	GGTNACC	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	509
BstFNI	CGCG	1 cut(s)	479
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	198
BstMWI	GCNNNNNNNGC	2 cut(s)	633, 642
BstNI	CCWGG	1 cut(s)	158
BstPI	GGTNACC	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	156
BstSLI	GKGCMC	1 cut(s)	397
BstUI	CGCG	1 cut(s)	479
BstV1I	GCAGC	4 cut(s)	36, 244, 590, 731
BstV2I	GAAGAC	1 cut(s)	780
BstX2I	RGATCY	1 cut(s)	198
BstXI	CCANNNNNNTGG	1 cut(s)	555
BstYI	RGATCY	1 cut(s)	198
BsuRI	GGCC	3 cut(s)	130, 167, 303
BtgI	CCRYGG	1 cut(s)	203
BtgZI	GCGATG	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	509
Cac8I	GCNNGC	5 cut(s)	87, 175, 255, 397, 596
CfoI	GCGC	1 cut(s)	481
Cfr10I	RCCGGY	1 cut(s)	318
Csp6I	GTAC	2 cut(s)	532, 553
CviAII	CATG	5 cut(s)	204, 232, 280, 457, 586
CviQI	GTAC	2 cut(s)	532, 553
DdeI	CTNAG	2 cut(s)	8, 413
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
DraIII	CACNNNGTG	1 cut(s)	527
EaeI	YGGCCR	2 cut(s)	165, 301
Eco130I	CCWWGG	1 cut(s)	203
Eco32I	GATATC	1 cut(s)	452
Eco88I	CYCGRG	1 cut(s)	308
Eco91I	GGTNACC	1 cut(s)	283
EcoO65I	GGTNACC	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	156
EcoRV	GATATC	1 cut(s)	452
EcoT14I	CCWWGG	1 cut(s)	203
ErhI	CCWWGG	1 cut(s)	203
FaeI	CATG	5 cut(s)	207, 235, 283, 460, 589
FaqI	GGGAC	1 cut(s)	549
FatI	CATG	5 cut(s)	203, 231, 279, 456, 585
Fnu4HI	GCNGC	4 cut(s)	50, 258, 579, 745
FokI	GGATG	1 cut(s)	516
Fsp4HI	GCNGC	4 cut(s)	50, 258, 579, 745
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	4 cut(s)	50, 258, 579, 745
HaeIII	GGCC	3 cut(s)	130, 167, 303
HapII	CCGG	2 cut(s)	319, 354
HhaI	GCGC	1 cut(s)	481
Hin1II	CATG	5 cut(s)	207, 235, 283, 460, 589
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	3 cut(s)	442, 544, 638
HpaII	CCGG	2 cut(s)	319, 354
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	1 cut(s)	534
Hpy188I	TCNGA	2 cut(s)	26, 447
Hpy188III	TCNNGA	5 cut(s)	341, 464, 501, 541, 670
Hpy8I	GTNNAC	1 cut(s)	534
HpyCH4III	ACNGT	1 cut(s)	498
HpyCH4IV	ACGT	2 cut(s)	536, 551
HpyCH4V	TGCA	5 cut(s)	74, 173, 273, 598, 645
HpyF10VI	GCNNNNNNNGC	2 cut(s)	633, 642
HpyF3I	CTNAG	2 cut(s)	8, 413
HpySE526I	ACGT	2 cut(s)	536, 551
Hsp92II	CATG	5 cut(s)	207, 235, 283, 460, 589
HspAI	GCGC	1 cut(s)	479
Kzo9I	GATC	1 cut(s)	198
LmnI	GCTCC	4 cut(s)	26, 185, 213, 603
Lsp1109I	GCAGC	4 cut(s)	36, 244, 590, 731
LweI	GCATC	4 cut(s)	36, 156, 282, 494
MaeII	ACGT	2 cut(s)	536, 551
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MboII	GAAGA	2 cut(s)	696, 785
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	397
MlsI	TGGCCA	2 cut(s)	167, 303
MluCI	AATT	4 cut(s)	57, 78, 103, 138
MluNI	TGGCCA	2 cut(s)	167, 303
MmeI	TCCRAC	1 cut(s)	572
MnlI	CCTC	4 cut(s)	189, 233, 287, 317
Mox20I	TGGCCA	2 cut(s)	167, 303
MscI	TGGCCA	2 cut(s)	167, 303
MseI	TTAA	1 cut(s)	474
MslI	CAYNNNNRTG	3 cut(s)	230, 278, 539
Msp20I	TGGCCA	2 cut(s)	167, 303
MspI	CCGG	2 cut(s)	319, 354
MspR9I	CCNGG	1 cut(s)	158
Mva1269I	GAATGC	1 cut(s)	766
MvaI	CCWGG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	479
MwoI	GCNNNNNNNGC	2 cut(s)	633, 642
NcoI	CCATGG	1 cut(s)	203
NdeII	GATC	1 cut(s)	198
NlaIII	CATG	5 cut(s)	207, 235, 283, 460, 589
NlaIV	GGNNCC	3 cut(s)	28, 200, 209
NmeAIII	GCCGAG	1 cut(s)	339
NmuCI	GTSAC	1 cut(s)	283
NspV	TTCGAA	1 cut(s)	376
OliI	CACNNNNGTG	1 cut(s)	539
PaeR7I	CTCGAG	1 cut(s)	308
PctI	GAATGC	1 cut(s)	766
PfeI	GAWTC	3 cut(s)	442, 544, 638
PflMI	CCANNNNNTGG	1 cut(s)	68
PkrI	GCNGC	4 cut(s)	51, 259, 580, 746
PsiI	TTATAA	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	156
PspEI	GGTNACC	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	3 cut(s)	28, 200, 209
PspXI	VCTCGAGB	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	198
RsaI	GTAC	2 cut(s)	533, 554
RsaNI	GTAC	2 cut(s)	532, 553
RseI	CAYNNNNRTG	3 cut(s)	230, 278, 539
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	4 cut(s)	50, 258, 579, 745
Sau3AI	GATC	1 cut(s)	198
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	9 cut(s)	120, 225, 309, 419, 539, 554, 652, 780, 809
SfaNI	GCATC	4 cut(s)	36, 156, 282, 494
Sfr274I	CTCGAG	1 cut(s)	308
SfuI	TTCGAA	1 cut(s)	376
SlaI	CTCGAG	1 cut(s)	308
SmiMI	CAYNNNNRTG	3 cut(s)	230, 278, 539
SmlI	CTYRAG	3 cut(s)	308, 462, 668
SmoI	CTYRAG	3 cut(s)	308, 462, 668
Sse9I	AATT	4 cut(s)	57, 78, 103, 138
StyD4I	CCNGG	1 cut(s)	156
StyI	CCWWGG	1 cut(s)	203
TaaI	ACNGT	1 cut(s)	498
TaiI	ACGT	2 cut(s)	539, 554
TaqI	TCGA	2 cut(s)	309, 376
TasI	AATT	4 cut(s)	57, 78, 103, 138
TfiI	GAWTC	3 cut(s)	442, 544, 638
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	4 cut(s)	49, 257, 578, 744
Tsp45I	GTSAC	1 cut(s)	283
TspGWI	ACGGA	1 cut(s)	773
Van91I	CCANNNNNTGG	1 cut(s)	68
XapI	RAATTY	1 cut(s)	78
XhoI	CTCGAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.