Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0013537

Physical Location & Seq

Genomic Coordinates Reverse (-)

24751409 .. 24753200

Gene Structure 1792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G021350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCACTTAGCAACAATGTCATTGCGGCCATCAACTTTGTTGCAATGCTCCTCTCCATCCCAATCATCGGTGCCGGAATCTGGCTCGCCACTGAACCTGACAACTCTTGCGTAAAGATTCTACAATGGCCTGTCATCATCTTGGGCATATTGTTCTTAGTTGTGGCCATTGCTGGCTTTGTGGGGGCGTTTTGGAGGATCCCGTGGCTCCTTGTCTCTTACCTTATTGCCATGCTCATCCTCATAGTCTTGCTTGCTTGTTTGGTGGTTTTCATCTACATGGTCACCATGAGGGGCTCCGGCCACCTTGAGCCGAGCCGGTCTTACTTGGAGTATCATCTTGATGATTACTCCGGTTGGCTTCGCCGGAGAGTTCGATCCCCTTTTAAGTGGGATCGCATCAGAGCTTGTCTTAGCTCAACGAATATGTGTGCTGAGTTGAATCAGAGTTATCGAATGGCTCAGGATTTCTTTAACGCGCACCTTACGCCCTTGCAGTCAGGATGCTGTAAACCACCAACACAATGTGGCTACACCTTTGTGAACCCGACCTATTGGATTAGCCCCATTAACAATGCGGCCGACATGGATTGCTTGCAGTGGAACAATGACCAGACACAGCTTTGCTTCAACTGCGATTCTTGCAAAGCCGGATTGCTTGCCAATCTGAAGAGAGAGTGGAGAAGAACAGACATAATATTGCTCATTACTCTAGTTGCTCTCATTTCGGTTTATTTGATAGGGTGCTGTGCTTTTAGGAATGCCAAAACAGAAGACCTTTTCCGCAAATACAAACAAGGCTATACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0009506 GO:0009553 GO:0009554 GO:0009653 GO:0009888 GO:0009933 GO:0009934 GO:0009956 GO:0009987 GO:0010015 GO:0010051 GO:0010305 GO:0016020 GO:0019953 GO:0022402 GO:0022414 GO:0022603 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048364 GO:0048507 GO:0048509 GO:0048532 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0051321 GO:0051704 GO:0055044 GO:0065007 GO:0071944 GO:0099402 GO:1903046 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

269

Amino Acids

30.57

Weight (kDa)

8.67

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tetraspanin	PF00335	5 - 251	1.1e-31	Tetraspanin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46700
fragaria_vesca	FvH4_5g22280 FvH4_5g22280
malus_domestica	MD06G1035600.v1.1 MD16G1272800.v1.1
prunus_persica	Prupe.5G034100_v2.0.a1
pyrus_communis	pycom06g02930 pycom16g24270
rosa_chinensis	RchiOBHm_Chr7g0209961
rosa_laevigata	RLG00000003073
rosa_multiflora	Rmu_sc0004509.1_g000011
rosa_roxburghii	Rroxscaffold_3G00248760
rosa_rugosa	Rorug07G0117800
rosa_samantha	Rh7AG251500 Rh7BG246200 Rh7CG268300 Rh7DG258300
rosa_wichuraiana	Rw7G021350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccII	CGCG	1 cut(s)	479
AciI	CCGC	3 cut(s)	26, 578, 784
AclWI	GGATC	4 cut(s)	193, 206, 372, 402
AcoI	YGGCCR	4 cut(s)	27, 165, 301, 579
AcuI	CTGAAG	1 cut(s)	689
AdeI	CACNNNGTG	1 cut(s)	527
AfiI	CCNNNNNNNGG	2 cut(s)	68, 81
AgsI	TTSAA	2 cut(s)	442, 631
AleI	CACNNNNGTG	1 cut(s)	539
AluBI	AGCT	3 cut(s)	407, 417, 622
AluI	AGCT	3 cut(s)	407, 417, 622
Alw26I	GTCTC	1 cut(s)	220
AlwI	GGATC	4 cut(s)	193, 206, 372, 402
AoxI	GGCC	5 cut(s)	27, 128, 165, 301, 579
AspLEI	GCGC	1 cut(s)	481
AsuHPI	GGTGA	1 cut(s)	277
BalI	TGGCCA	1 cut(s)	167
BamHI	GGATCC	1 cut(s)	198
BanI	GGYRCC	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	780
BccI	CCATC	2 cut(s)	38, 65
BcoDI	GTCTC	1 cut(s)	220
BfaI	CTAG	1 cut(s)	713
BisI	GCNGC	2 cut(s)	27, 579
BlsI	GCNGC	2 cut(s)	28, 580
BmiI	GGNNCC	4 cut(s)	73, 200, 209, 298
BmsI	GCATC	2 cut(s)	408, 494
BpiI	GAAGAC	1 cut(s)	780
Bpu10I	CCTNAGC	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 81
Bse118I	RCCGGY	1 cut(s)	318
Bse3DI	GCAATG	3 cut(s)	21, 51, 168
BseDI	CCNNGG	1 cut(s)	203
BseGI	GGATG	3 cut(s)	57, 237, 509
BseLI	CCNNNNNNNGG	2 cut(s)	68, 81
BseMI	GCAATG	3 cut(s)	21, 51, 168
BseMII	CTCAG	2 cut(s)	426, 476
BseRI	GAGGAG	1 cut(s)	41
BseX3I	CGGCCG	1 cut(s)	579
Bsh1236I	CGCG	1 cut(s)	479
Bsh1285I	CGRYCG	1 cut(s)	582
BshFI	GGCC	5 cut(s)	29, 130, 167, 303, 581
BshNI	GGYRCC	1 cut(s)	71
BsiEI	CGRYCG	1 cut(s)	582
BsiSI	CCGG	6 cut(s)	75, 300, 319, 354, 367, 651
BslI	CCNNNNNNNGG	2 cut(s)	68, 81
BsmAI	GTCTC	1 cut(s)	220
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	5 cut(s)	29, 130, 167, 303, 581
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp143I	GATC	3 cut(s)	198, 377, 394
BspACI	CCGC	3 cut(s)	26, 578, 784
BspANI	GGCC	5 cut(s)	29, 130, 167, 303, 581
BspCNI	CTCAG	2 cut(s)	427, 475
BspFNI	CGCG	1 cut(s)	479
BspLI	GGNNCC	4 cut(s)	73, 200, 209, 298
BspPI	GGATC	4 cut(s)	193, 206, 372, 402
BspT107I	GGYRCC	1 cut(s)	71
BsrDI	GCAATG	3 cut(s)	21, 51, 168
BsrFI	RCCGGY	1 cut(s)	318
BssAI	RCCGGY	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	3 cut(s)	198, 377, 394
Bst6I	CTCTTC	1 cut(s)	665
BstC8I	GCNNGC	5 cut(s)	87, 175, 255, 596, 660
BstDEI	CTNAG	5 cut(s)	8, 157, 413, 435, 462
BstDSI	CCRYGG	1 cut(s)	203
BstEII	GGTNACC	1 cut(s)	283
BstF5I	GGATG	3 cut(s)	57, 237, 509
BstFNI	CGCG	1 cut(s)	479
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	3 cut(s)	201, 380, 397
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	3 cut(s)	198, 377, 394
BstMCI	CGRYCG	1 cut(s)	582
BstMWI	GCNNNNNNNGC	3 cut(s)	487, 633, 642
BstPI	GGTNACC	1 cut(s)	283
BstUI	CGCG	1 cut(s)	479
BstV2I	GAAGAC	1 cut(s)	780
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BstZI	CGGCCG	1 cut(s)	579
BsuRI	GGCC	5 cut(s)	29, 130, 167, 303, 581
BtgI	CCRYGG	1 cut(s)	203
BtsCI	GGATG	3 cut(s)	57, 237, 509
BtsI	GCAGTG	1 cut(s)	605
BtsIMutI	CAGTG	2 cut(s)	90, 605
Cac8I	GCNNGC	5 cut(s)	87, 175, 255, 596, 660
CfoI	GCGC	1 cut(s)	481
Cfr10I	RCCGGY	1 cut(s)	318
CviAII	CATG	4 cut(s)	232, 280, 289, 586
DdeI	CTNAG	5 cut(s)	8, 157, 413, 435, 462
DpnI	GATC	3 cut(s)	200, 379, 396
DpnII	GATC	3 cut(s)	198, 377, 394
DraIII	CACNNNGTG	1 cut(s)	527
EaeI	YGGCCR	4 cut(s)	27, 165, 301, 579
EagI	CGGCCG	1 cut(s)	579
Eam1104I	CTCTTC	1 cut(s)	665
EarI	CTCTTC	1 cut(s)	665
EclXI	CGGCCG	1 cut(s)	579
Eco24I	GRGCYC	1 cut(s)	299
Eco52I	CGGCCG	1 cut(s)	579
Eco57I	CTGAAG	1 cut(s)	689
Eco91I	GGTNACC	1 cut(s)	283
EcoO65I	GGTNACC	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	299
FaeI	CATG	4 cut(s)	235, 283, 292, 589
FaiI	YATR	9 cut(s)	149, 233, 245, 281, 290, 428, 587, 695, 804
FatI	CATG	4 cut(s)	231, 279, 288, 585
Fnu4HI	GCNGC	2 cut(s)	27, 579
FokI	GGATG	3 cut(s)	44, 224, 516
FriOI	GRGCYC	1 cut(s)	299
Fsp4HI	GCNGC	2 cut(s)	27, 579
FspBI	CTAG	1 cut(s)	713
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	2 cut(s)	27, 579
HaeIII	GGCC	5 cut(s)	29, 130, 167, 303, 581
HapII	CCGG	6 cut(s)	75, 300, 319, 354, 367, 651
HhaI	GCGC	1 cut(s)	481
Hin1II	CATG	4 cut(s)	235, 283, 292, 589
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HinfI	GANTC	4 cut(s)	78, 118, 442, 638
HpaII	CCGG	6 cut(s)	75, 300, 319, 354, 367, 651
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	2 cut(s)	512, 544
Hpy188I	TCNGA	3 cut(s)	404, 447, 669
Hpy188III	TCNNGA	3 cut(s)	341, 464, 501
Hpy8I	GTNNAC	2 cut(s)	512, 544
HpyCH4V	TGCA	4 cut(s)	44, 496, 598, 645
HpyF10VI	GCNNNNNNNGC	3 cut(s)	487, 633, 642
HpyF3I	CTNAG	5 cut(s)	8, 157, 413, 435, 462
Hsp92II	CATG	4 cut(s)	235, 283, 292, 589
HspAI	GCGC	1 cut(s)	479
Kzo9I	GATC	3 cut(s)	198, 377, 394
LmnI	GCTCC	3 cut(s)	54, 213, 302
LweI	GCATC	2 cut(s)	408, 494
MaeI	CTAG	1 cut(s)	713
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	3 cut(s)	200, 379, 396
MboI	GATC	3 cut(s)	198, 377, 394
MboII	GAAGA	3 cut(s)	682, 696, 785
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	299
MlsI	TGGCCA	1 cut(s)	167
MluNI	TGGCCA	1 cut(s)	167
MnlI	CCTC	4 cut(s)	62, 189, 251, 285
Mox20I	TGGCCA	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	167
MseI	TTAA	3 cut(s)	387, 474, 570
MslI	CAYNNNNRTG	3 cut(s)	278, 342, 539
Msp20I	TGGCCA	1 cut(s)	167
MspI	CCGG	6 cut(s)	75, 300, 319, 354, 367, 651
Mva1269I	GAATGC	1 cut(s)	766
MvnI	CGCG	1 cut(s)	479
MwoI	GCNNNNNNNGC	3 cut(s)	487, 633, 642
NdeII	GATC	3 cut(s)	198, 377, 394
NlaIII	CATG	4 cut(s)	235, 283, 292, 589
NlaIV	GGNNCC	4 cut(s)	73, 200, 209, 298
NmeAIII	GCCGAG	1 cut(s)	339
NmuCI	GTSAC	1 cut(s)	283
OliI	CACNNNNGTG	1 cut(s)	539
PctI	GAATGC	1 cut(s)	766
PfeI	GAWTC	4 cut(s)	78, 118, 442, 638
PkrI	GCNGC	2 cut(s)	28, 580
PspEI	GGTNACC	1 cut(s)	283
PspN4I	GGNNCC	4 cut(s)	73, 200, 209, 298
PsuI	RGATCY	1 cut(s)	198
RseI	CAYNNNNRTG	3 cut(s)	278, 342, 539
SaqAI	TTAA	3 cut(s)	387, 474, 570
SatI	GCNGC	2 cut(s)	27, 579
Sau3AI	GATC	3 cut(s)	198, 377, 394
SduI	GDGCHC	1 cut(s)	299
SfaNI	GCATC	2 cut(s)	408, 494
SmiMI	CAYNNNNRTG	3 cut(s)	278, 342, 539
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SsiI	CCGC	3 cut(s)	26, 578, 784
SspI	AATATT	1 cut(s)	699
SspMI	CTAG	1 cut(s)	713
TaqI	TCGA	2 cut(s)	376, 454
TauI	GCSGC	2 cut(s)	29, 581
TfiI	GAWTC	4 cut(s)	78, 118, 442, 638
Tru1I	TTAA	3 cut(s)	387, 474, 570
Tru9I	TTAA	3 cut(s)	387, 474, 570
TscAI	CASTG	2 cut(s)	97, 605
TseFI	GTSAC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	1 cut(s)	262
TspRI	CASTG	2 cut(s)	97, 605
XspI	CTAG	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.