Rorug07G0117800

Belongs to the tetraspanin (TM4SF) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0013537
Physical Location & Seq
Forward (+)
9231293 .. 9232196
904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0117800.1

Sequence Viewer

Length: 291 bp
ATGAATTCTTGTATGGATTTCACAGGACAAGAGTTCCAGATTATCCCATTTGGAGCTGGCAGGAGATGTTGCCAAGGAATCCTATTTTCCATGATCACTACTGAGCTTGTGCTAGCAAATCTTGTGCACAAGTTTGAGTGGGCATTGCCTAGTGGAGCCAGAGCTGAGGATATGAACATGACAGAACGCAATGGTCTTGTCATCCACAGAGATGTTCCTCTTCTAGCTATGGCAGCACCAAGGTCTTCTTCAATGTACTTTCTCTTCTTTAATGTTTTTATGTTACTCTAG

Protein Analysis

96

Amino Acids

10.87

Weight (kDa)

6.03

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 9 - 69 5.2e-10 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013537)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46700
fragaria_vesca FvH4_5g22280 FvH4_5g22280
malus_domestica MD06G1035600.v1.1 MD16G1272800.v1.1
prunus_persica Prupe.5G034100_v2.0.a1
pyrus_communis pycom06g02930 pycom16g24270
rosa_chinensis RchiOBHm_Chr7g0209961
rosa_laevigata RLG00000003073
rosa_multiflora Rmu_sc0004509.1_g000011
rosa_roxburghii Rroxscaffold_3G00248760
rosa_rugosa Rorug07G0117800
rosa_samantha Rh7AG251500 Rh7BG246200 Rh7CG268300 Rh7DG258300
rosa_wichuraiana Rw7G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 4
AfaI GTAC 1 cut(s) 257
AgsI TTSAA 1 cut(s) 252
AjuI GAANNNNNNNTTGG 2 cut(s) 232, 264
AluBI AGCT 4 cut(s) 56, 106, 164, 227
AluI AGCT 4 cut(s) 56, 106, 164, 227
Alw21I GWGCWC 1 cut(s) 129
Alw44I GTGCAC 1 cut(s) 125
ApaLI GTGCAC 1 cut(s) 125
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 1 cut(s) 4
AsuNHI GCTAGC 1 cut(s) 112
BaeGI GKGCMC 1 cut(s) 129
BarI GAAGNNNNNNTAC 2 cut(s) 248, 280
BbsI GAAGAC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 129
BbvCI CCTCAGC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 245
BclI TGATCA 1 cut(s) 93
BfaI CTAG 4 cut(s) 113, 150, 224, 289
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 157
BmtI GCTAGC 1 cut(s) 116
BpiI GAAGAC 1 cut(s) 237
Bpu10I CCTNAGC 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 73, 239
Bse3DI GCAATG 2 cut(s) 143, 196
BseDI CCNNGG 2 cut(s) 73, 239
BseGI GGATG 1 cut(s) 201
BseMI GCAATG 2 cut(s) 143, 196
BseMII CTCAG 2 cut(s) 93, 156
BseSI GKGCMC 1 cut(s) 129
BseXI GCAGC 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 1 cut(s) 93
BspCNI CTCAG 2 cut(s) 94, 157
BspLI GGNNCC 1 cut(s) 157
BspOI GCTAGC 1 cut(s) 116
BsrDI GCAATG 2 cut(s) 143, 196
BssECI CCNNGG 2 cut(s) 73, 239
BssMI GATC 1 cut(s) 93
BssT1I CCWWGG 2 cut(s) 73, 239
Bst6I CTCTTC 2 cut(s) 225, 269
BstC8I GCNNGC 2 cut(s) 58, 114
BstDEI CTNAG 2 cut(s) 102, 165
BstF5I GGATG 1 cut(s) 201
BstKTI GATC 1 cut(s) 96
BstMBI GATC 1 cut(s) 93
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstSLI GKGCMC 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 245
BstV2I GAAGAC 1 cut(s) 237
BtsCI GGATG 1 cut(s) 201
Cac8I GCNNGC 2 cut(s) 58, 114
Csp6I GTAC 1 cut(s) 256
CviAII CATG 2 cut(s) 91, 178
CviJI RGCY 5 cut(s) 56, 106, 158, 164, 227
CviKI_1 RGCY 5 cut(s) 56, 106, 158, 164, 227
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 2 cut(s) 102, 165
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
Eam1104I CTCTTC 2 cut(s) 225, 269
EarI CTCTTC 2 cut(s) 225, 269
Eco130I CCWWGG 2 cut(s) 73, 239
EcoRI GAATTC 1 cut(s) 4
EcoT14I CCWWGG 2 cut(s) 73, 239
ErhI CCWWGG 2 cut(s) 73, 239
FaeI CATG 2 cut(s) 94, 181
FaiI YATR 6 cut(s) 14, 92, 173, 179, 230, 281
FalI AAGNNNNNCTT 2 cut(s) 232, 264
FatI CATG 2 cut(s) 90, 177
FbaI TGATCA 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 4 cut(s) 113, 150, 224, 289
GluI GCNGC 1 cut(s) 234
Hin1II CATG 2 cut(s) 94, 181
HinfI GANTC 1 cut(s) 78
Hpy166II GTNNAC 1 cut(s) 127
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 127
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 2 cut(s) 102, 165
Hsp92II CATG 2 cut(s) 94, 181
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 1 cut(s) 93
LmnI GCTCC 2 cut(s) 53, 155
LpnPI CCDG 5 cut(s) 9, 42, 46, 50, 172
Lsp1109I GCAGC 1 cut(s) 245
MaeI CTAG 4 cut(s) 113, 150, 224, 289
MaeIII GTNAC 1 cut(s) 282
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 4 cut(s) 212, 237, 240, 256
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 1 cut(s) 4
MnlI CCTC 2 cut(s) 160, 228
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeII GATC 1 cut(s) 93
NheI GCTAGC 1 cut(s) 112
NlaIII CATG 2 cut(s) 94, 181
NlaIV GGNNCC 1 cut(s) 157
PfeI GAWTC 1 cut(s) 78
PkrI GCNGC 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 157
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
RseI CAYNNNNRTG 1 cut(s) 210
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 1 cut(s) 93
SduI GDGCHC 1 cut(s) 129
SetI ASST 5 cut(s) 58, 108, 166, 229, 245
SmiMI CAYNNNNRTG 1 cut(s) 210
Sse9I AATT 1 cut(s) 4
SspMI CTAG 4 cut(s) 113, 150, 224, 289
StyI CCWWGG 2 cut(s) 73, 239
TasI AATT 1 cut(s) 4
TatI WGTACW 1 cut(s) 255
TfiI GAWTC 1 cut(s) 78
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TseI GCWGC 1 cut(s) 233
TspDTI ATGAA 2 cut(s) 17, 188
VneI GTGCAC 1 cut(s) 125
XapI RAATTY 1 cut(s) 4
XspI CTAG 4 cut(s) 113, 150, 224, 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.