Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0013537

Physical Location & Seq

Genomic Coordinates Reverse (-)

3744736 .. 3747097

Gene Structure 2362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g02930.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGAAAGCCACGAAGACAGTGAACCCATACAAGTTGTTTTCCTTGTGCAATGCAAAATTTATAGGGCAAAGCCCGATTCATGTGGATGCAGCTGCCAAAACATTCCCACTTGCTTTACCATCTTTACATGGATCCAAGGGAAGGAACAAAAAGTGTTGGTTTTGATGCCAAAAGGGTTTAAAGGAGAGGAACATATCGATCTAGAGACCGAAATGGCACTTAGCAACAATGTCATCGGAGCCATCAACTTCGTTGCGATGCTCCTCTCAATCCCAATCATTGGTACAGGAATTTGGCTCGCAACAGAGCCAGACAATTCTTGTGTAAAACTTTTACAATGGCCTGTCATAATTTTAGGCATCTTGTTCCTGGTTGTGGCCATCGCCGGCTTTGTGGGAGCGTTTTGGAGGATCCCATGGCTCCTTATCTGTTACCTCATTGCCATGCTGGTTCTTATAATCTTGCTTGCTGCTTTGGTGGTTTTCATCTACATGGTCACTATTAGAGGCTCCGGCCACCTCGAACCGAGCCGGTCTTACCTAGAATATCATCTTGATGATTACTCCGGTTGGCTTCGCCGTAGAGTTCGAAGCCCTTTTAAGTGGGAACGCATAAGAACTTGTCTTAGTTCTACAAATATGTGCGCTGAGTTGAATCAGAGTTACAGCATGGCTCAGGATTTTTTTAACGCTCACATTACCCCCTTACAGTCAGGATGCTGTAAGCCACCCACACAATGTGGTTACACGTTCGTGAATCCAACGTACTGGATAAGTCCCATCAACAACGCAGCCGACATGGATTGCCTGAATTGGAACAACGACCAGACCCAACTTTGCTTCAACTGCGATTCCTGCAAAGCTGGATTACTTGCTAATCTCAAGAAAGAATGGAGAAGAGCCAACATTATATTGATCATCACTCTCATTGCTCTCGTTGCCGTTTATTTGACAGGCTGCTGTGCCTTTCGGAATGCCAAAACCGAAGACCTTTTCCGCAAATACAAGCAAGGCTATACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0009506 GO:0009553 GO:0009554 GO:0009653 GO:0009888 GO:0009933 GO:0009934 GO:0009956 GO:0009987 GO:0010015 GO:0010051 GO:0010305 GO:0016020 GO:0019953 GO:0022402 GO:0022414 GO:0022603 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048364 GO:0048507 GO:0048509 GO:0048532 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0051321 GO:0051704 GO:0055044 GO:0065007 GO:0071944 GO:0099402 GO:1903046 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

341

Amino Acids

38.56

Weight (kDa)

7.79

Isoelectric Point (pI)

44.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46700
fragaria_vesca	FvH4_5g22280 FvH4_5g22280
malus_domestica	MD06G1035600.v1.1 MD16G1272800.v1.1
prunus_persica	Prupe.5G034100_v2.0.a1
pyrus_communis	pycom06g02930 pycom16g24270
rosa_chinensis	RchiOBHm_Chr7g0209961
rosa_laevigata	RLG00000003073
rosa_multiflora	Rmu_sc0004509.1_g000011
rosa_roxburghii	Rroxscaffold_3G00248760
rosa_rugosa	Rorug07G0117800
rosa_samantha	Rh7AG251500 Rh7BG246200 Rh7CG268300 Rh7DG258300
rosa_wichuraiana	Rw7G021350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	458
AccB7I	CCANNNNNTGG	1 cut(s)	281
AciI	CCGC	1 cut(s)	997
AclWI	GGATC	4 cut(s)	127, 140, 406, 419
AcoI	YGGCCR	2 cut(s)	378, 514
AcsI	RAATTY	2 cut(s)	57, 291
AdeI	CACNNNGTG	1 cut(s)	740
AfaI	GTAC	2 cut(s)	286, 767
AfiI	CCNNNNNNNGG	3 cut(s)	142, 281, 376
AflIII	ACRYGT	1 cut(s)	747
AgsI	TTSAA	2 cut(s)	655, 844
AjnI	CCWGG	1 cut(s)	369
AleI	CACNNNNGTG	1 cut(s)	752
AluBI	AGCT	2 cut(s)	93, 863
AluI	AGCT	2 cut(s)	93, 863
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	4 cut(s)	127, 140, 406, 419
AoxI	GGCC	3 cut(s)	341, 378, 514
ApeKI	GCWGC	5 cut(s)	90, 93, 470, 791, 957
ApoI	RAATTY	2 cut(s)	57, 291
AspLEI	GCGC	1 cut(s)	647
AsuII	TTCGAA	1 cut(s)	589
BalI	TGGCCA	1 cut(s)	380
BamHI	GGATCC	2 cut(s)	132, 411
BbsI	GAAGAC	2 cut(s)	21, 993
BbvI	GCAGC	5 cut(s)	80, 102, 457, 803, 944
BccI	CCATC	4 cut(s)	128, 251, 389, 788
BceAI	ACGGC	2 cut(s)	564, 926
BciT130I	CCWGG	1 cut(s)	371
BclI	TGATCA	1 cut(s)	915
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	2 cut(s)	203, 542
BisI	GCNGC	5 cut(s)	91, 94, 471, 792, 958
BlsI	GCNGC	5 cut(s)	92, 95, 472, 793, 959
Bme1390I	CCNGG	1 cut(s)	371
BmiI	GGNNCC	5 cut(s)	134, 241, 413, 422, 511
BmrFI	CCNGG	1 cut(s)	371
BmsI	GCATC	5 cut(s)	77, 156, 249, 369, 707
BpiI	GAAGAC	2 cut(s)	21, 993
Bpu10I	CCTNAGC	1 cut(s)	675
Bpu14I	TTCGAA	1 cut(s)	589
BpuEI	CTTGAG	1 cut(s)	866
Bsa29I	ATCGAT	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	136, 416
BsaWI	WCCGGW	1 cut(s)	566
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 281, 376
Bse118I	RCCGGY	2 cut(s)	386, 531
Bse1I	ACTGG	1 cut(s)	773
Bse3DI	GCAATG	3 cut(s)	56, 438, 927
BseBI	CCWGG	1 cut(s)	371
BseCI	ATCGAT	1 cut(s)	198
BseDI	CCNNGG	2 cut(s)	136, 416
BseGI	GGATG	2 cut(s)	92, 722
BseLI	CCNNNNNNNGG	3 cut(s)	142, 281, 376
BseMI	GCAATG	3 cut(s)	56, 438, 927
BseMII	CTCAG	2 cut(s)	639, 689
BseNI	ACTGG	1 cut(s)	773
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	5 cut(s)	80, 102, 457, 803, 944
BshFI	GGCC	3 cut(s)	343, 380, 516
BshVI	ATCGAT	1 cut(s)	198
BsiSI	CCGG	4 cut(s)	387, 513, 532, 567
BslFI	GGGAC	1 cut(s)	762
BslI	CCNNNNNNNGG	3 cut(s)	142, 281, 376
BsmAI	GTCTC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	762
BsmI	GAATGC	1 cut(s)	979
BsnI	GGCC	3 cut(s)	343, 380, 516
Bso31I	GGTCTC	1 cut(s)	200
Bsp119I	TTCGAA	1 cut(s)	589
Bsp143I	GATC	4 cut(s)	132, 199, 411, 915
Bsp19I	CCATGG	1 cut(s)	416
BspACI	CCGC	1 cut(s)	997
BspANI	GGCC	3 cut(s)	343, 380, 516
BspCNI	CTCAG	2 cut(s)	640, 688
BspDI	ATCGAT	1 cut(s)	198
BspLI	GGNNCC	5 cut(s)	134, 241, 413, 422, 511
BspPI	GGATC	4 cut(s)	127, 140, 406, 419
BspQI	GCTCTTC	1 cut(s)	892
BspT104I	TTCGAA	1 cut(s)	589
BspTNI	GGTCTC	1 cut(s)	200
BsrDI	GCAATG	3 cut(s)	56, 438, 927
BsrFI	RCCGGY	2 cut(s)	386, 531
BsrI	ACTGG	1 cut(s)	773
BssAI	RCCGGY	2 cut(s)	386, 531
BssECI	CCNNGG	2 cut(s)	136, 416
BssMI	GATC	4 cut(s)	132, 199, 411, 915
BssT1I	CCWWGG	2 cut(s)	136, 416
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	2 cut(s)	20, 711
Bst6I	CTCTTC	1 cut(s)	892
BstBI	TTCGAA	1 cut(s)	589
BstC8I	GCNNGC	3 cut(s)	300, 388, 468
BstDEI	CTNAG	4 cut(s)	221, 626, 648, 675
BstDSI	CCRYGG	1 cut(s)	416
BstF5I	GGATG	2 cut(s)	92, 722
BstHHI	GCGC	1 cut(s)	647
BstKTI	GATC	4 cut(s)	135, 202, 414, 918
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	4 cut(s)	132, 199, 411, 915
BstMWI	GCNNNNNNNGC	3 cut(s)	846, 855, 938
BstNI	CCWGG	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	369
BstV1I	GCAGC	5 cut(s)	80, 102, 457, 803, 944
BstV2I	GAAGAC	2 cut(s)	21, 993
BstX2I	RGATCY	2 cut(s)	132, 411
BstXI	CCANNNNNNTGG	1 cut(s)	768
BstYI	RGATCY	2 cut(s)	132, 411
Bsu15I	ATCGAT	1 cut(s)	198
BsuRI	GGCC	3 cut(s)	343, 380, 516
BsuTUI	ATCGAT	1 cut(s)	198
BtgI	CCRYGG	1 cut(s)	416
BtgZI	GCGATG	2 cut(s)	272, 367
BtsCI	GGATG	2 cut(s)	92, 722
BtsIMutI	CAGTG	1 cut(s)	25
Cac8I	GCNNGC	3 cut(s)	300, 388, 468
CfoI	GCGC	1 cut(s)	647
Cfr10I	RCCGGY	2 cut(s)	386, 531
ClaI	ATCGAT	1 cut(s)	198
Csp6I	GTAC	2 cut(s)	285, 766
CviAII	CATG	7 cut(s)	81, 129, 417, 445, 493, 670, 799
CviQI	GTAC	2 cut(s)	285, 766
DdeI	CTNAG	4 cut(s)	221, 626, 648, 675
DpnI	GATC	4 cut(s)	134, 201, 413, 917
DpnII	GATC	4 cut(s)	132, 199, 411, 915
DraI	TTTAAA	1 cut(s)	181
DraIII	CACNNNGTG	1 cut(s)	740
EaeI	YGGCCR	2 cut(s)	378, 514
Eam1104I	CTCTTC	1 cut(s)	892
EarI	CTCTTC	1 cut(s)	892
Eco130I	CCWWGG	2 cut(s)	136, 416
Eco31I	GGTCTC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	369
EcoT14I	CCWWGG	2 cut(s)	136, 416
ErhI	CCWWGG	2 cut(s)	136, 416
FaeI	CATG	7 cut(s)	84, 132, 420, 448, 496, 673, 802
FaqI	GGGAC	1 cut(s)	762
FatI	CATG	7 cut(s)	80, 128, 416, 444, 492, 669, 798
FbaI	TGATCA	1 cut(s)	915
Fnu4HI	GCNGC	5 cut(s)	91, 94, 471, 792, 958
FokI	GGATG	2 cut(s)	99, 729
Fsp4HI	GCNGC	5 cut(s)	91, 94, 471, 792, 958
FspBI	CTAG	2 cut(s)	203, 542
GlaI	GCGC	1 cut(s)	646
GluI	GCNGC	5 cut(s)	91, 94, 471, 792, 958
HaeIII	GGCC	3 cut(s)	343, 380, 516
HapII	CCGG	4 cut(s)	387, 513, 532, 567
HhaI	GCGC	1 cut(s)	647
Hin1II	CATG	7 cut(s)	84, 132, 420, 448, 496, 673, 802
Hin6I	GCGC	1 cut(s)	645
HinP1I	GCGC	1 cut(s)	645
HinfI	GANTC	4 cut(s)	77, 655, 757, 851
HpaII	CCGG	4 cut(s)	387, 513, 532, 567
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	3 cut(s)	239, 660, 972
Hpy188III	TCNNGA	6 cut(s)	203, 554, 677, 714, 754, 883
Hpy8I	GTNNAC	1 cut(s)	23
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	2 cut(s)	20, 711
HpyCH4IV	ACGT	2 cut(s)	749, 764
HpyCH4V	TGCA	4 cut(s)	49, 54, 90, 858
HpyF10VI	GCNNNNNNNGC	3 cut(s)	846, 855, 938
HpyF3I	CTNAG	4 cut(s)	221, 626, 648, 675
HpySE526I	ACGT	2 cut(s)	749, 764
Hsp92II	CATG	7 cut(s)	84, 132, 420, 448, 496, 673, 802
HspAI	GCGC	1 cut(s)	645
KroI	GCCGGC	1 cut(s)	386
KroNI	GCCGGC	1 cut(s)	388
Ksp22I	TGATCA	1 cut(s)	915
Kzo9I	GATC	4 cut(s)	132, 199, 411, 915
LguI	GCTCTTC	1 cut(s)	892
LmnI	GCTCC	5 cut(s)	239, 267, 398, 426, 515
Lsp1109I	GCAGC	5 cut(s)	80, 102, 457, 803, 944
LweI	GCATC	5 cut(s)	77, 156, 249, 369, 707
MaeI	CTAG	2 cut(s)	203, 542
MaeII	ACGT	2 cut(s)	749, 764
MaeIII	GTNAC	4 cut(s)	431, 496, 662, 743
MalI	GATC	4 cut(s)	134, 201, 413, 917
MboI	GATC	4 cut(s)	132, 199, 411, 915
MboII	GAAGA	3 cut(s)	26, 909, 998
MflI	RGATCY	2 cut(s)	132, 411
MlsI	TGGCCA	1 cut(s)	380
MluCI	AATT	5 cut(s)	57, 291, 316, 351, 811
MluNI	TGGCCA	1 cut(s)	380
MmeI	TCCRAC	1 cut(s)	785
MnlI	CCTC	6 cut(s)	181, 275, 402, 446, 500, 530
Mox20I	TGGCCA	1 cut(s)	380
MroNI	GCCGGC	1 cut(s)	386
MscI	TGGCCA	1 cut(s)	380
MseI	TTAA	3 cut(s)	180, 600, 687
MslI	CAYNNNNRTG	5 cut(s)	85, 443, 491, 555, 752
Msp20I	TGGCCA	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	93
MspI	CCGG	4 cut(s)	387, 513, 532, 567
MspR9I	CCNGG	1 cut(s)	371
Mva1269I	GAATGC	1 cut(s)	979
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	3 cut(s)	846, 855, 938
NaeI	GCCGGC	1 cut(s)	388
NcoI	CCATGG	1 cut(s)	416
NdeII	GATC	4 cut(s)	132, 199, 411, 915
NgoMIV	GCCGGC	1 cut(s)	386
NlaIII	CATG	7 cut(s)	84, 132, 420, 448, 496, 673, 802
NlaIV	GGNNCC	5 cut(s)	134, 241, 413, 422, 511
NmuCI	GTSAC	1 cut(s)	496
NspV	TTCGAA	1 cut(s)	589
OliI	CACNNNNGTG	1 cut(s)	752
PciSI	GCTCTTC	1 cut(s)	892
PctI	GAATGC	1 cut(s)	979
PdiI	GCCGGC	1 cut(s)	388
PfeI	GAWTC	4 cut(s)	77, 655, 757, 851
PflMI	CCANNNNNTGG	1 cut(s)	281
PkrI	GCNGC	5 cut(s)	92, 95, 472, 793, 959
PsiI	TTATAA	1 cut(s)	458
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	5 cut(s)	134, 241, 413, 422, 511
PsuI	RGATCY	2 cut(s)	132, 411
PvuII	CAGCTG	1 cut(s)	93
RsaI	GTAC	2 cut(s)	286, 767
RsaNI	GTAC	2 cut(s)	285, 766
RseI	CAYNNNNRTG	5 cut(s)	85, 443, 491, 555, 752
SapI	GCTCTTC	1 cut(s)	892
SaqAI	TTAA	3 cut(s)	180, 600, 687
SatI	GCNGC	5 cut(s)	91, 94, 471, 792, 958
Sau3AI	GATC	4 cut(s)	132, 199, 411, 915
ScrFI	CCNGG	1 cut(s)	371
SetI	ASST	9 cut(s)	95, 438, 522, 543, 752, 767, 865, 993, 1022
SfaNI	GCATC	5 cut(s)	77, 156, 249, 369, 707
SfuI	TTCGAA	1 cut(s)	589
SmiMI	CAYNNNNRTG	5 cut(s)	85, 443, 491, 555, 752
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
Sse9I	AATT	5 cut(s)	57, 291, 316, 351, 811
SsiI	CCGC	1 cut(s)	997
SspMI	CTAG	2 cut(s)	203, 542
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	2 cut(s)	136, 416
TaaI	ACNGT	2 cut(s)	20, 711
TaiI	ACGT	2 cut(s)	752, 767
TaqI	TCGA	3 cut(s)	198, 522, 589
TaqII	GACCGA	1 cut(s)	224
TasI	AATT	5 cut(s)	57, 291, 316, 351, 811
TfiI	GAWTC	4 cut(s)	77, 655, 757, 851
Tru1I	TTAA	3 cut(s)	180, 600, 687
Tru9I	TTAA	3 cut(s)	180, 600, 687
TscAI	CASTG	1 cut(s)	25
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	5 cut(s)	90, 93, 470, 791, 957
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	2 cut(s)	69, 475
TspRI	CASTG	1 cut(s)	25
Van91I	CCANNNNNTGG	1 cut(s)	281
XapI	RAATTY	2 cut(s)	57, 291
XbaI	TCTAGA	1 cut(s)	202
XspI	CTAG	2 cut(s)	203, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.