Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0013537

Physical Location & Seq

Genomic Coordinates Reverse (-)

4620597 .. 4622648

Gene Structure 2052 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1035600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCACTTAGCAACAATGTCATCGGAGCCATCAACTTCGTTGCGATGCTCCTCTCAATCCCAATCATTGGTACAGGAATTTGGCTCGCAACAGAGCCAGACAATTCTTGTGTAAAACTTTTACAATGGCCTGTCATAATTTTAGGCATCTTGTTCCTGGTTGTGGCCATCGCCGGCTTTGTGGGAGCGTTTTGGAGGATCCCATGGCTCCTTATCTGTTACCTCATTGCCATGCTGGTTCTTATAATCTTGCTTGCTGCTTTGGTGGTTTTCATCTACATGGTCACTATTAGAGGCTCCGGCCACCTTGAACCGAGCCGGTCTTACCTAGAATATCATCTTGATGATTACTCCGGTTGGCTTCGCCGTAGAGTTCGAAGCCCTTTTAAGTGGGAACGCATAAGAACTTGTCTTAGTTCTACAAATATGTGCGCTGAGTTGAATCAGAGTTACAGCATGGCTCAAGATTTTTTTAACGCTCACATTACCCCCTTACAGTCAGGATGCTGTAAGCCACCCACACAATGTGGTTACACGTTCGTGAATCCAACGTACTGGATAAGTCCCATCAACAACGCAGCCGACATGGACTGCCTGAATTGGAACAACGACCAGACCCAACTTTGCTTCAACTGCGATTCCTGCAAAGCTGGATTACTTGCTAATCTCAAGAAAGAATGGAGAAGAGCCGACATTATATTGCTCATCACTCTCATTGCTCTCGTTGCCGTTTATTTGATAGGCTGCTGTGCCTTTCGGAATGCCAAAACCGAAGACCTTTTCCGCAAATACAAGCAAGGCTATACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0009506 GO:0009553 GO:0009554 GO:0009653 GO:0009888 GO:0009933 GO:0009934 GO:0009956 GO:0009987 GO:0010015 GO:0010051 GO:0010305 GO:0016020 GO:0019953 GO:0022402 GO:0022414 GO:0022603 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048364 GO:0048507 GO:0048509 GO:0048532 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0051321 GO:0051704 GO:0055044 GO:0065007 GO:0071944 GO:0099402 GO:1903046 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

270

Amino Acids

30.46

Weight (kDa)

8.54

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tetraspanin	PF00335	5 - 251	8.5e-32	Tetraspanin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46700
fragaria_vesca	FvH4_5g22280 FvH4_5g22280
malus_domestica	MD06G1035600.v1.1 MD16G1272800.v1.1
prunus_persica	Prupe.5G034100_v2.0.a1
pyrus_communis	pycom06g02930 pycom16g24270
rosa_chinensis	RchiOBHm_Chr7g0209961
rosa_laevigata	RLG00000003073
rosa_multiflora	Rmu_sc0004509.1_g000011
rosa_roxburghii	Rroxscaffold_3G00248760
rosa_rugosa	Rorug07G0117800
rosa_samantha	Rh7AG251500 Rh7BG246200 Rh7CG268300 Rh7DG258300
rosa_wichuraiana	Rw7G021350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	245
AccB7I	CCANNNNNTGG	1 cut(s)	68
AciI	CCGC	1 cut(s)	784
AclWI	GGATC	2 cut(s)	193, 206
AcoI	YGGCCR	2 cut(s)	165, 301
AcsI	RAATTY	1 cut(s)	78
AdeI	CACNNNGTG	1 cut(s)	527
AfaI	GTAC	2 cut(s)	73, 554
AfiI	CCNNNNNNNGG	2 cut(s)	68, 163
AflIII	ACRYGT	1 cut(s)	534
AgsI	TTSAA	3 cut(s)	311, 442, 631
AjnI	CCWGG	1 cut(s)	156
AleI	CACNNNNGTG	1 cut(s)	539
AluBI	AGCT	1 cut(s)	650
AluI	AGCT	1 cut(s)	650
AlwI	GGATC	2 cut(s)	193, 206
AoxI	GGCC	3 cut(s)	128, 165, 301
ApeKI	GCWGC	3 cut(s)	257, 578, 744
ApoI	RAATTY	1 cut(s)	78
AspLEI	GCGC	1 cut(s)	434
AsuII	TTCGAA	1 cut(s)	376
BalI	TGGCCA	1 cut(s)	167
BamHI	GGATCC	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	780
BbvI	GCAGC	3 cut(s)	244, 590, 731
BccI	CCATC	3 cut(s)	38, 176, 575
BceAI	ACGGC	2 cut(s)	351, 713
BciT130I	CCWGG	1 cut(s)	158
BfaI	CTAG	1 cut(s)	329
BisI	GCNGC	3 cut(s)	258, 579, 745
BlsI	GCNGC	3 cut(s)	259, 580, 746
Bme1390I	CCNGG	1 cut(s)	158
BmiI	GGNNCC	4 cut(s)	28, 200, 209, 298
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	3 cut(s)	36, 156, 494
BpiI	GAAGAC	1 cut(s)	780
Bpu14I	TTCGAA	1 cut(s)	376
BpuEI	CTTGAG	2 cut(s)	447, 653
BsaJI	CCNNGG	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 163
Bse118I	RCCGGY	2 cut(s)	173, 318
Bse1I	ACTGG	1 cut(s)	560
Bse3DI	GCAATG	2 cut(s)	225, 714
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	1 cut(s)	203
BseGI	GGATG	1 cut(s)	509
BseLI	CCNNNNNNNGG	2 cut(s)	68, 163
BseMI	GCAATG	2 cut(s)	225, 714
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	1 cut(s)	560
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	3 cut(s)	244, 590, 731
BshFI	GGCC	3 cut(s)	130, 167, 303
BsiSI	CCGG	4 cut(s)	174, 300, 319, 354
BslFI	GGGAC	1 cut(s)	549
BslI	CCNNNNNNNGG	2 cut(s)	68, 163
BsmFI	GGGAC	1 cut(s)	549
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	3 cut(s)	130, 167, 303
Bsp119I	TTCGAA	1 cut(s)	376
Bsp143I	GATC	1 cut(s)	198
Bsp19I	CCATGG	1 cut(s)	203
BspACI	CCGC	1 cut(s)	784
BspANI	GGCC	3 cut(s)	130, 167, 303
BspCNI	CTCAG	1 cut(s)	427
BspLI	GGNNCC	4 cut(s)	28, 200, 209, 298
BspPI	GGATC	2 cut(s)	193, 206
BspQI	GCTCTTC	1 cut(s)	679
BspT104I	TTCGAA	1 cut(s)	376
BsrDI	GCAATG	2 cut(s)	225, 714
BsrFI	RCCGGY	2 cut(s)	173, 318
BsrI	ACTGG	1 cut(s)	560
BssAI	RCCGGY	2 cut(s)	173, 318
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	1 cut(s)	198
BssT1I	CCWWGG	1 cut(s)	203
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	498
Bst6I	CTCTTC	1 cut(s)	679
BstBI	TTCGAA	1 cut(s)	376
BstC8I	GCNNGC	3 cut(s)	87, 175, 255
BstDEI	CTNAG	3 cut(s)	8, 413, 435
BstDSI	CCRYGG	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	509
BstHHI	GCGC	1 cut(s)	434
BstKTI	GATC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	198
BstMWI	GCNNNNNNNGC	3 cut(s)	633, 642, 725
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstV1I	GCAGC	3 cut(s)	244, 590, 731
BstV2I	GAAGAC	1 cut(s)	780
BstX2I	RGATCY	1 cut(s)	198
BstXI	CCANNNNNNTGG	1 cut(s)	555
BstYI	RGATCY	1 cut(s)	198
BsuRI	GGCC	3 cut(s)	130, 167, 303
BtgI	CCRYGG	1 cut(s)	203
BtgZI	GCGATG	2 cut(s)	59, 154
BtsCI	GGATG	1 cut(s)	509
Cac8I	GCNNGC	3 cut(s)	87, 175, 255
CfoI	GCGC	1 cut(s)	434
Cfr10I	RCCGGY	2 cut(s)	173, 318
Csp6I	GTAC	2 cut(s)	72, 553
CviAII	CATG	5 cut(s)	204, 232, 280, 457, 586
CviQI	GTAC	2 cut(s)	72, 553
DdeI	CTNAG	3 cut(s)	8, 413, 435
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
DraIII	CACNNNGTG	1 cut(s)	527
EaeI	YGGCCR	2 cut(s)	165, 301
Eam1104I	CTCTTC	1 cut(s)	679
EarI	CTCTTC	1 cut(s)	679
Eco130I	CCWWGG	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	203
ErhI	CCWWGG	1 cut(s)	203
FaeI	CATG	5 cut(s)	207, 235, 283, 460, 589
FaqI	GGGAC	1 cut(s)	549
FatI	CATG	5 cut(s)	203, 231, 279, 456, 585
Fnu4HI	GCNGC	3 cut(s)	258, 579, 745
FokI	GGATG	1 cut(s)	516
Fsp4HI	GCNGC	3 cut(s)	258, 579, 745
FspBI	CTAG	1 cut(s)	329
GlaI	GCGC	1 cut(s)	433
GluI	GCNGC	3 cut(s)	258, 579, 745
HaeIII	GGCC	3 cut(s)	130, 167, 303
HapII	CCGG	4 cut(s)	174, 300, 319, 354
HhaI	GCGC	1 cut(s)	434
Hin1II	CATG	5 cut(s)	207, 235, 283, 460, 589
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HinfI	GANTC	3 cut(s)	442, 544, 638
HpaII	CCGG	4 cut(s)	174, 300, 319, 354
Hpy188I	TCNGA	3 cut(s)	26, 447, 759
Hpy188III	TCNNGA	5 cut(s)	341, 464, 501, 541, 670
HpyCH4III	ACNGT	1 cut(s)	498
HpyCH4IV	ACGT	2 cut(s)	536, 551
HpyCH4V	TGCA	1 cut(s)	645
HpyF10VI	GCNNNNNNNGC	3 cut(s)	633, 642, 725
HpyF3I	CTNAG	3 cut(s)	8, 413, 435
HpySE526I	ACGT	2 cut(s)	536, 551
Hsp92II	CATG	5 cut(s)	207, 235, 283, 460, 589
HspAI	GCGC	1 cut(s)	432
KroI	GCCGGC	1 cut(s)	173
KroNI	GCCGGC	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	198
LguI	GCTCTTC	1 cut(s)	679
LmnI	GCTCC	5 cut(s)	26, 54, 185, 213, 302
Lsp1109I	GCAGC	3 cut(s)	244, 590, 731
LweI	GCATC	3 cut(s)	36, 156, 494
MaeI	CTAG	1 cut(s)	329
MaeII	ACGT	2 cut(s)	536, 551
MaeIII	GTNAC	4 cut(s)	218, 283, 449, 530
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MboII	GAAGA	2 cut(s)	696, 785
MflI	RGATCY	1 cut(s)	198
MlsI	TGGCCA	1 cut(s)	167
MluCI	AATT	4 cut(s)	78, 103, 138, 598
MluNI	TGGCCA	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	572
MnlI	CCTC	4 cut(s)	62, 189, 233, 287
Mox20I	TGGCCA	1 cut(s)	167
MroNI	GCCGGC	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	167
MseI	TTAA	2 cut(s)	387, 474
MslI	CAYNNNNRTG	4 cut(s)	230, 278, 342, 539
Msp20I	TGGCCA	1 cut(s)	167
MspI	CCGG	4 cut(s)	174, 300, 319, 354
MspR9I	CCNGG	1 cut(s)	158
Mva1269I	GAATGC	1 cut(s)	766
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	3 cut(s)	633, 642, 725
NaeI	GCCGGC	1 cut(s)	175
NcoI	CCATGG	1 cut(s)	203
NdeII	GATC	1 cut(s)	198
NgoMIV	GCCGGC	1 cut(s)	173
NlaIII	CATG	5 cut(s)	207, 235, 283, 460, 589
NlaIV	GGNNCC	4 cut(s)	28, 200, 209, 298
NmuCI	GTSAC	1 cut(s)	283
NspV	TTCGAA	1 cut(s)	376
OliI	CACNNNNGTG	1 cut(s)	539
PciSI	GCTCTTC	1 cut(s)	679
PctI	GAATGC	1 cut(s)	766
PdiI	GCCGGC	1 cut(s)	175
PfeI	GAWTC	3 cut(s)	442, 544, 638
PflMI	CCANNNNNTGG	1 cut(s)	68
PkrI	GCNGC	3 cut(s)	259, 580, 746
PsiI	TTATAA	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	4 cut(s)	28, 200, 209, 298
PsuI	RGATCY	1 cut(s)	198
RsaI	GTAC	2 cut(s)	73, 554
RsaNI	GTAC	2 cut(s)	72, 553
RseI	CAYNNNNRTG	4 cut(s)	230, 278, 342, 539
SapI	GCTCTTC	1 cut(s)	679
SaqAI	TTAA	2 cut(s)	387, 474
SatI	GCNGC	3 cut(s)	258, 579, 745
Sau3AI	GATC	1 cut(s)	198
ScrFI	CCNGG	1 cut(s)	158
SetI	ASST	8 cut(s)	225, 309, 330, 539, 554, 652, 780, 809
SfaNI	GCATC	3 cut(s)	36, 156, 494
SfuI	TTCGAA	1 cut(s)	376
SmiMI	CAYNNNNRTG	4 cut(s)	230, 278, 342, 539
SmlI	CTYRAG	2 cut(s)	462, 668
SmoI	CTYRAG	2 cut(s)	462, 668
Sse9I	AATT	4 cut(s)	78, 103, 138, 598
SsiI	CCGC	1 cut(s)	784
SspMI	CTAG	1 cut(s)	329
StyD4I	CCNGG	1 cut(s)	156
StyI	CCWWGG	1 cut(s)	203
TaaI	ACNGT	1 cut(s)	498
TaiI	ACGT	2 cut(s)	539, 554
TaqI	TCGA	1 cut(s)	376
TasI	AATT	4 cut(s)	78, 103, 138, 598
TfiI	GAWTC	3 cut(s)	442, 544, 638
Tru1I	TTAA	2 cut(s)	387, 474
Tru9I	TTAA	2 cut(s)	387, 474
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	3 cut(s)	257, 578, 744
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	1 cut(s)	262
Van91I	CCANNNNNTGG	1 cut(s)	68
XapI	RAATTY	1 cut(s)	78
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.