Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006743

Physical Location & Seq

Genomic Coordinates Forward (+)

19306139 .. 19307094

Gene Structure 956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGCATTGCATTAGGAGCTCAATCCTGCAACACTTGAGACTGAGAGTCTCTGTCAGACCCACTTCGCTTCTTCAGAACGAGAATGGTTTCAAGAGTATTGGTATTTTTAATTTCACATCAGAAGCAGCTGCAGATGGAGGCCAAGATCAAATATTGAGCAGGGTTATTGAACTGGTGAAGAAATACGACAAAACCAACACCTCTGAGGTTACTGAAAGGGCTGATTTTCAGAAAGATTTGTCGTTGGACAGCTTGGACAAGACGGAGCTAGTTATGGCTATTGAAGAAGAGTTCTCGATTGAGATCCCTGATGAGAAAGCTGATAAGCTTACTTGTTGTGGTGATGTTGCAACATACATACTCTCTGAAACTCCTACCAAAGCGTCTGAGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0051192 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

131

Amino Acids

14.62

Weight (kDa)

4.74

Isoelectric Point (pI)

55.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	54 - 120	5.3e-09	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47630 AT5G47630 AT5G47630
fragaria_vesca	FvH4_3g00380
prunus_persica	Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1
pyrus_communis	pycom10g28830
rosa_chinensis	RchiOBHm_Chr5g0000581
rosa_laevigata	RLG00000030877
rosa_multiflora	Rmu_co8349929.1_g000001 Rmu_sc0003699.1_g000004 Rmu_sc0008807.1_g000004
rosa_roxburghii	Rroxscaffold_1G00075630
rosa_rugosa	Rorug04G0384800 Rorug04G0384900 Rorug04G0385000 Rorug04G0385000
rosa_samantha	Rh5AG004700 Rh5BG006200 Rh5CG005100 Rh5DG005100
rosa_wichuraiana	Rw5G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	298
AcuI	CTGAAG	1 cut(s)	56
AgsI	TTSAA	3 cut(s)	91, 170, 284
AhdI	GACNNNNNGTC	1 cut(s)	44
AluBI	AGCT	6 cut(s)	18, 128, 252, 268, 320, 328
AluI	AGCT	6 cut(s)	18, 128, 252, 268, 320, 328
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	2 cut(s)	31, 52
AlwI	GGATC	1 cut(s)	298
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	2 cut(s)	125, 128
Asp700I	GAANNNNTTC	1 cut(s)	86
AsuHPI	GGTGA	2 cut(s)	187, 353
BanII	GRGCYC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	2 cut(s)	115, 137
BccI	CCATC	1 cut(s)	128
BcoDI	GTCTC	2 cut(s)	31, 52
BfaI	CTAG	1 cut(s)	269
BfmI	CTRYAG	1 cut(s)	129
BisI	GCNGC	2 cut(s)	126, 129
BlsI	GCNGC	2 cut(s)	127, 130
BmeRI	GACNNNNNGTC	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	177
Bse3DI	GCAATG	1 cut(s)	4
Bse8I	GATNNNNATC	1 cut(s)	302
BseJI	GATNNNNATC	1 cut(s)	302
BseMI	GCAATG	1 cut(s)	4
BseMII	CTCAG	3 cut(s)	32, 195, 378
BseNI	ACTGG	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	115, 137
BshFI	GGCC	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	20
BsmAI	GTCTC	2 cut(s)	31, 52
BsnI	GGCC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	145, 303
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	3 cut(s)	33, 196, 379
BspMAI	CTGCAG	1 cut(s)	133
BspPI	GGATC	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	177
BssMI	GATC	2 cut(s)	145, 303
Bst6I	CTCTTC	1 cut(s)	282
BstDEI	CTNAG	3 cut(s)	41, 204, 387
BstKTI	GATC	2 cut(s)	148, 306
BstMAI	GTCTC	2 cut(s)	31, 52
BstMBI	GATC	2 cut(s)	145, 303
BstMWI	GCNNNNNNNGC	1 cut(s)	15
BstSFI	CTRYAG	1 cut(s)	129
BstV1I	GCAGC	2 cut(s)	115, 137
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	141
CseI	GACGC	1 cut(s)	372
CviJI	RGCY	9 cut(s)	18, 128, 141, 221, 252, 268, 278, 320, 328
CviKI_1	RGCY	9 cut(s)	18, 128, 141, 221, 252, 268, 278, 320, 328
DdeI	CTNAG	3 cut(s)	41, 204, 387
DpnI	GATC	2 cut(s)	147, 305
DpnII	GATC	2 cut(s)	145, 303
DriI	GACNNNNNGTC	1 cut(s)	44
Eam1104I	CTCTTC	1 cut(s)	282
Eam1105I	GACNNNNNGTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	282
Ecl136II	GAGCTC	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	18
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	20
FaiI	YATR	3 cut(s)	275, 355, 359
Fnu4HI	GCNGC	2 cut(s)	126, 129
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	2 cut(s)	126, 129
FspBI	CTAG	1 cut(s)	269
GluI	GCNGC	2 cut(s)	126, 129
HaeIII	GGCC	1 cut(s)	141
HgaI	GACGC	1 cut(s)	372
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	2 cut(s)	45, 389
HphI	GGTGA	2 cut(s)	187, 353
Hpy188I	TCNGA	7 cut(s)	56, 75, 121, 205, 231, 367, 388
Hpy188III	TCNNGA	3 cut(s)	91, 295, 393
HpyCH4V	TGCA	5 cut(s)	4, 9, 28, 131, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	15
HpyF3I	CTNAG	3 cut(s)	41, 204, 387
Kzo9I	GATC	2 cut(s)	145, 303
LmnI	GCTCC	2 cut(s)	15, 265
LpnPI	CCDG	4 cut(s)	38, 145, 158, 321
Lsp1109I	GCAGC	2 cut(s)	115, 137
MaeI	CTAG	1 cut(s)	269
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	2 cut(s)	147, 305
MboI	GATC	2 cut(s)	145, 303
MboII	GAAGA	4 cut(s)	62, 190, 296, 299
MflI	RGATCY	1 cut(s)	303
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	1 cut(s)	109
MlyI	GAGTC	1 cut(s)	54
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	3 cut(s)	131, 199, 211
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	86
MseI	TTAA	1 cut(s)	108
MspA1I	CMGCKG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	15
NdeII	GATC	2 cut(s)	145, 303
NsiI	ATGCAT	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	127, 130
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Psp124BI	GAGCTC	1 cut(s)	20
PstI	CTGCAG	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	303
PvuII	CAGCTG	1 cut(s)	128
SacI	GAGCTC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	2 cut(s)	126, 129
Sau3AI	GATC	2 cut(s)	145, 303
SchI	GAGTC	1 cut(s)	54
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	8 cut(s)	20, 130, 203, 210, 254, 270, 322, 330
SfcI	CTRYAG	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
Sse9I	AATT	1 cut(s)	109
SspI	AATATT	1 cut(s)	153
SspMI	CTAG	1 cut(s)	269
SstI	GAGCTC	1 cut(s)	20
TaqI	TCGA	1 cut(s)	296
TasI	AATT	1 cut(s)	109
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TseI	GCWGC	2 cut(s)	125, 128
TspGWI	ACGGA	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	86
XspI	CTAG	1 cut(s)	269
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.