Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006743

Physical Location & Seq

Genomic Coordinates Reverse (-)

205860 .. 208292

Gene Structure 2433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g00380.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCAAAGCATTAGAAATTCAATCTTGTGCCATGTGAGGATTGGGACTTCACCACAAACAGGGAATGCGCTTAGAAGTTTGAGTCGCCATCTGTGTGCGTCAACAAGCACCAACACTGATCAGGTTTTGGACAGAGTGGTTGGACTGGTGAAGAAATTTGATAAAATCGATTCTTCTAAGGTTACAGAAACAGCTGATTTCCAGAAGGACTTGAGCCTCGATAGTTTGGACAGGGTGGAGCTTGTTATGGCCTTTGAGGAAGAGTTCTCCATTGAAATCCCCGAGGAGAAAGCGGATAAGCTCACCTGCTGCGCTGATGTTGCAAGATACATAGCTTCTGAAGCTGATCAGAAGAGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0051192 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

121

Amino Acids

13.28

Weight (kDa)

4.99

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding_2	PF14573	38 - 117	9.7e-06	Acyl-carrier
PP-binding	PF00550	44 - 111	9.9e-10	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47630 AT5G47630 AT5G47630
fragaria_vesca	FvH4_3g00380
prunus_persica	Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1 Prupe.4G004400_v2.0.a1
pyrus_communis	pycom10g28830
rosa_chinensis	RchiOBHm_Chr5g0000581
rosa_laevigata	RLG00000030877
rosa_multiflora	Rmu_co8349929.1_g000001 Rmu_sc0003699.1_g000004 Rmu_sc0008807.1_g000004
rosa_roxburghii	Rroxscaffold_1G00075630
rosa_rugosa	Rorug04G0384800 Rorug04G0384900 Rorug04G0385000 Rorug04G0385000
rosa_samantha	Rh5AG004700 Rh5BG006200 Rh5CG005100 Rh5DG005100
rosa_wichuraiana	Rw5G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	314
Acc36I	ACCTGC	1 cut(s)	314
AciI	CCGC	1 cut(s)	293
AcsI	RAATTY	2 cut(s)	16, 155
AcuI	CTGAAG	1 cut(s)	360
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	2 cut(s)	21, 275
AluBI	AGCT	5 cut(s)	194, 241, 301, 335, 344
AluI	AGCT	5 cut(s)	194, 241, 301, 335, 344
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	309
ApoI	RAATTY	2 cut(s)	16, 155
AspLEI	GCGC	2 cut(s)	70, 314
AsuHPI	GGTGA	3 cut(s)	42, 160, 295
AvaI	CYCGRG	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	296
BccI	CCATC	1 cut(s)	96
BclI	TGATCA	2 cut(s)	118, 346
BfuAI	ACCTGC	1 cut(s)	314
BisI	GCNGC	1 cut(s)	310
BlsI	GCNGC	1 cut(s)	311
BmeT110I	CYCGRG	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	232
Bsa29I	ATCGAT	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse1I	ACTGG	1 cut(s)	150
BseCI	ATCGAT	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseNI	ACTGG	1 cut(s)	150
BseRI	GAGGAG	1 cut(s)	299
BseXI	GCAGC	1 cut(s)	296
BshFI	GGCC	1 cut(s)	251
BshVI	ATCGAT	1 cut(s)	168
BsiHKCI	CYCGRG	1 cut(s)	281
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	251
BsoBI	CYCGRG	1 cut(s)	281
Bsp143I	GATC	2 cut(s)	118, 346
BspACI	CCGC	1 cut(s)	293
BspANI	GGCC	1 cut(s)	251
BspDI	ATCGAT	1 cut(s)	168
BspMI	ACCTGC	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	2 cut(s)	118, 346
Bst6I	CTCTTC	2 cut(s)	255, 347
BstDEI	CTNAG	2 cut(s)	71, 177
BstHHI	GCGC	2 cut(s)	70, 314
BstKTI	GATC	2 cut(s)	121, 349
BstMBI	GATC	2 cut(s)	118, 346
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 341
BstV1I	GCAGC	1 cut(s)	296
Bsu15I	ATCGAT	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	251
BsuTUI	ATCGAT	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	114
BveI	ACCTGC	1 cut(s)	314
CfoI	GCGC	2 cut(s)	70, 314
ClaI	ATCGAT	1 cut(s)	168
CseI	GACGC	1 cut(s)	87
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	7 cut(s)	194, 216, 241, 251, 301, 335, 344
CviKI_1	RGCY	7 cut(s)	194, 216, 241, 251, 301, 335, 344
DdeI	CTNAG	2 cut(s)	71, 177
DpnI	GATC	2 cut(s)	120, 348
DpnII	GATC	2 cut(s)	118, 346
Eam1104I	CTCTTC	2 cut(s)	255, 347
EarI	CTCTTC	2 cut(s)	255, 347
Eco57I	CTGAAG	1 cut(s)	360
Eco88I	CYCGRG	1 cut(s)	281
FaeI	CATG	1 cut(s)	35
FaiI	YATR	3 cut(s)	33, 248, 332
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	1 cut(s)	31
FbaI	TGATCA	2 cut(s)	118, 346
Fnu4HI	GCNGC	1 cut(s)	310
Fsp4HI	GCNGC	1 cut(s)	310
GlaI	GCGC	2 cut(s)	69, 313
GluI	GCNGC	1 cut(s)	310
HaeIII	GGCC	1 cut(s)	251
HgaI	GACGC	1 cut(s)	87
HhaI	GCGC	2 cut(s)	70, 314
Hin1II	CATG	1 cut(s)	35
Hin6I	GCGC	2 cut(s)	68, 312
HinP1I	GCGC	2 cut(s)	68, 312
HincII	GTYRAC	1 cut(s)	102
HindII	GTYRAC	1 cut(s)	102
HinfI	GANTC	2 cut(s)	82, 170
HphI	GGTGA	3 cut(s)	42, 160, 295
Hpy166II	GTNNAC	1 cut(s)	102
Hpy188I	TCNGA	2 cut(s)	340, 351
Hpy188III	TCNNGA	1 cut(s)	202
Hpy8I	GTNNAC	1 cut(s)	102
HpyAV	CCTTC	1 cut(s)	199
HpyCH4V	TGCA	2 cut(s)	4, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 341
HpyF3I	CTNAG	2 cut(s)	71, 177
Hsp92II	CATG	1 cut(s)	35
HspAI	GCGC	2 cut(s)	68, 312
Ksp22I	TGATCA	2 cut(s)	118, 346
Kzo9I	GATC	2 cut(s)	118, 346
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	6 cut(s)	45, 107, 131, 215, 217, 319
Lsp1109I	GCAGC	1 cut(s)	296
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	2 cut(s)	120, 348
MboI	GATC	2 cut(s)	118, 346
MboII	GAAGA	3 cut(s)	163, 165, 272
MluCI	AATT	2 cut(s)	16, 155
MlyI	GAGTC	1 cut(s)	91
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	4 cut(s)	30, 227, 250, 277
MseI	TTAA	1 cut(s)	361
MslI	CAYNNNNRTG	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	194
Mva1269I	GAATGC	1 cut(s)	70
MwoI	GCNNNNNNNGC	2 cut(s)	320, 341
NdeII	GATC	2 cut(s)	118, 346
NlaIII	CATG	1 cut(s)	35
PaqCI	CACCTGC	1 cut(s)	314
PctI	GAATGC	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	311
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
PvuII	CAGCTG	1 cut(s)	194
RseI	CAYNNNNRTG	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	361
SatI	GCNGC	1 cut(s)	310
Sau3AI	GATC	2 cut(s)	118, 346
SchI	GAGTC	1 cut(s)	91
SetI	ASST	8 cut(s)	126, 183, 196, 243, 303, 308, 337, 346
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
Sse9I	AATT	2 cut(s)	16, 155
SsiI	CCGC	1 cut(s)	293
TaqI	TCGA	2 cut(s)	168, 219
TasI	AATT	2 cut(s)	16, 155
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	1 cut(s)	361
Tru9I	TTAA	1 cut(s)	361
TscAI	CASTG	1 cut(s)	121
TseI	GCWGC	1 cut(s)	309
TspRI	CASTG	1 cut(s)	121
XapI	RAATTY	2 cut(s)	16, 155
XcmI	CCANNNNNNNNNTGG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.